Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46499 * 109.46799 * 65.00172 * 3 2 1 14 14 C 1.34778 * 119.99771 * 274.99826 * 13 3 2 15 15 O 1.21279 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99935 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47250 * 180.02562 * 16 14 13 18 18 H 1.09008 * 109.30135 * 54.58100 * 17 16 14 19 19 C 1.52920 * 109.30285 * 173.96166 * 17 16 14 20 20 C 1.53350 * 108.67412 * 171.06370 * 19 17 16 21 21 C 1.53062 * 108.42750 * 292.47201 * 20 19 17 22 22 C 1.50180 * 109.89247 * 48.89523 * 21 20 19 23 23 O 1.21283 * 118.24241 * 162.39288 * 22 21 20 24 24 N 1.33349 * 123.50822 * 342.42801 * 22 21 20 25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 27 27 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 28 28 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00630 * 95.00428 * 13 3 2 32 32 H 1.08999 * 109.47030 * 300.00189 * 16 14 13 33 33 H 1.08995 * 109.47091 * 59.99897 * 16 14 13 34 34 H 1.08999 * 109.60403 * 290.82175 * 19 17 16 35 35 H 1.08996 * 109.60061 * 51.31019 * 19 17 16 36 36 H 1.09005 * 109.67034 * 172.73201 * 20 19 17 37 37 H 1.09005 * 109.70135 * 52.22255 * 20 19 17 38 38 H 1.09000 * 109.39998 * 288.77098 * 21 20 19 39 39 H 1.09000 * 109.40684 * 169.03086 * 21 20 19 40 40 H 0.97003 * 117.94984 * 182.19500 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5967 0.1450 -0.2343 11 1 6.3978 0.2166 -2.6504 12 1 6.5006 2.2798 -1.3807 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3394 2.6320 0.4344 16 6 0.0368 3.3386 2.6545 17 6 -1.3825 3.8943 2.5213 18 1 -2.0556 3.0935 2.2149 19 6 -1.8394 4.4433 3.8734 20 6 -3.1622 5.1938 3.6770 21 6 -2.8883 6.4466 2.8414 22 6 -2.0793 6.0852 1.6287 23 8 -2.0472 6.8708 0.7053 24 7 -1.3952 4.9465 1.5128 25 1 -0.3633 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.0681 2.6145 3.4686 33 1 0.7282 4.1540 2.8668 34 1 -1.9865 3.6195 4.5718 35 1 -1.0857 5.1269 4.2641 36 1 -3.5686 5.4810 4.6468 37 1 -3.8741 4.5535 3.1559 38 1 -2.3364 7.1692 3.4425 39 1 -3.8348 6.8866 2.5273 40 1 -0.8733 4.8098 0.7066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288660732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -99.628386 kcal Electronic energy + Delta-G solvation = -21100.671472 eV Core-core repulsion = 17914.221670 eV Total energy + Delta-G solvation = -3186.449802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42597 -38.98404 -36.69282 -35.10034 -33.17059 -32.47767 -31.45573 -30.64907 -27.93960 -26.66767 -23.73033 -22.94296 -22.30488 -20.25727 -19.38523 -19.15308 -17.24477 -17.10512 -16.18544 -15.73430 -15.53118 -15.15576 -14.82114 -14.38424 -14.13133 -13.78894 -13.69699 -13.24668 -12.90051 -12.70306 -12.40893 -11.85839 -11.67573 -11.45504 -11.29215 -11.23389 -11.20501 -11.14885 -11.01507 -10.84365 -10.36316 -10.20851 -9.68911 -9.65966 -9.11362 -9.03649 -8.91338 -8.52903 -7.88792 -6.15048 -4.24962 2.76037 3.23402 3.28063 3.29499 3.30827 3.43774 3.94356 4.32587 4.43615 4.53885 4.61114 4.70521 5.02093 5.16103 5.18763 5.23031 5.40357 5.46531 5.56572 5.64282 5.66767 5.73132 5.81960 6.06867 6.34897 6.40813 6.61375 6.97800 6.99447 7.15324 7.32052 7.39857 7.55485 7.58157 7.68712 7.86156 8.14659 8.37463 8.60054 8.73177 9.05894 9.42501 10.90138 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.004258 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.547573 B = 6573.972490 C = 6821.753838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.496 3.504 15 O -0.549 6.549 16 C -0.160 4.160 17 C 0.158 3.842 18 H 0.084 0.916 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.514 3.486 23 O -0.567 6.567 24 N -0.703 5.703 25 H 0.022 0.978 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 5.143 14.941 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.281 3.719 15 O -0.428 6.428 16 C -0.201 4.201 17 C 0.052 3.948 18 H 0.102 0.898 19 C -0.172 4.172 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.300 3.700 23 O -0.447 6.447 24 N -0.357 5.357 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.578 5.428 13.779 17.637 hybrid contribution 1.636 -0.265 0.039 1.658 sum -7.942 5.163 13.818 16.753 Atomic orbital electron populations 1.21829 0.98327 0.98003 1.01192 1.21932 0.92606 0.99817 1.02267 1.18791 0.94199 0.89189 0.81020 0.93279 1.21188 0.90729 1.39249 1.06352 0.92193 1.24881 0.98604 0.94760 0.95363 1.69879 1.35250 1.37443 1.09293 0.86521 0.84855 0.78330 0.77466 1.20172 1.21107 1.20186 1.46527 1.14566 1.55636 1.18566 1.20342 0.82974 0.79481 0.89098 1.90687 1.51311 1.60178 1.40674 1.22171 0.97606 1.01873 0.98408 1.20686 0.96074 0.90019 0.88042 0.89841 1.21979 0.97744 1.01148 0.96285 1.21653 0.97652 0.96285 1.00492 1.21642 1.01288 0.99387 0.95187 1.20154 0.79692 0.81153 0.88963 1.90755 1.64494 1.48943 1.40459 1.45701 1.49601 1.17391 1.22988 0.95917 0.94320 0.93141 0.88319 0.95093 0.92471 0.77949 0.87936 0.88767 0.89639 0.90758 0.90537 0.90957 0.88501 0.88447 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.71 -13.42 5.02 -54.93 -0.28 -13.70 16 14 C 0.50 8.60 6.04 -10.98 -0.07 8.53 16 15 O -0.55 -11.42 11.69 5.56 0.06 -11.35 16 16 C -0.16 -1.84 5.34 -27.88 -0.15 -1.99 16 17 C 0.16 1.77 2.64 -68.38 -0.18 1.59 16 18 H 0.08 1.03 7.94 -51.92 -0.41 0.62 16 19 C -0.13 -1.01 5.30 -26.59 -0.14 -1.15 16 20 C -0.12 -0.90 6.03 -26.52 -0.16 -1.06 16 21 C -0.14 -1.29 6.03 -28.10 -0.17 -1.46 16 22 C 0.51 7.49 7.71 -11.87 -0.09 7.40 16 23 O -0.57 -10.91 17.78 5.55 0.10 -10.81 16 24 N -0.70 -10.10 5.01 -54.85 -0.27 -10.37 16 25 H 0.02 0.43 8.14 -51.94 -0.42 0.01 16 26 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.10 2.60 5.95 -51.92 -0.31 2.29 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.36 8.54 -40.82 -0.35 6.01 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.41 7.08 6.94 -40.82 -0.28 6.80 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -31.77 318.84 -7.53 -39.30 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.21 Total: 10.52 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.34 Total: 0.05 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.08 Total: -47.86 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.77 -7.53 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288660732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.332 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds