Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08999 * 109.46921 * 55.00538 * 3 2 1 5 5 C 1.50705 * 109.46689 * 174.99781 * 3 2 1 6 6 H 1.08009 * 119.99783 * 120.00441 * 5 3 2 7 7 C 1.37875 * 120.00236 * 299.99844 * 5 3 2 8 8 N 1.31515 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46937 * 90.00259 * 9 7 5 11 11 H 1.48497 * 109.47358 * 210.00449 * 9 7 5 12 12 H 1.48498 * 109.46912 * 330.00347 * 9 7 5 13 13 N 1.46496 * 109.47512 * 294.99810 * 3 2 1 14 14 C 1.34780 * 119.99842 * 85.00016 * 13 3 2 15 15 O 1.21278 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99875 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47066 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.12704 * 304.47728 * 17 16 14 19 19 C 1.52919 * 109.30008 * 184.99649 * 17 16 14 20 20 C 1.53347 * 108.67100 * 188.93091 * 19 17 16 21 21 C 1.53063 * 108.42518 * 67.53276 * 20 19 17 22 22 C 1.50170 * 109.88883 * 311.08112 * 21 20 19 23 23 O 1.21288 * 118.24905 * 197.62100 * 22 21 20 24 24 N 1.33353 * 123.50873 * 17.61837 * 22 21 20 25 25 H 1.09008 * 109.46862 * 59.99560 * 1 2 3 26 26 H 1.08997 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47150 * 299.99817 * 1 2 3 28 28 H 1.09002 * 109.46766 * 240.00010 * 2 1 3 29 29 H 1.09000 * 109.47126 * 120.00409 * 2 1 3 30 30 H 0.97001 * 119.99943 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00393 * 265.00441 * 13 3 2 32 32 H 1.08990 * 109.47688 * 59.99957 * 16 14 13 33 33 H 1.09006 * 109.47092 * 299.99654 * 16 14 13 34 34 H 1.09002 * 109.60418 * 69.17818 * 19 17 16 35 35 H 1.08992 * 109.74193 * 308.76753 * 19 17 16 36 36 H 1.09007 * 109.67147 * 187.26516 * 20 19 17 37 37 H 1.09000 * 109.67555 * 307.79437 * 20 19 17 38 38 H 1.09012 * 109.40253 * 71.22578 * 21 20 19 39 39 H 1.09001 * 109.40493 * 190.96780 * 21 20 19 40 40 H 0.97001 * 117.94907 * 177.75561 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.4417 2.1140 2.0850 11 1 6.4396 -0.3100 2.1549 12 1 6.6135 0.8415 0.0279 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3392 2.6327 -0.4341 16 6 0.0364 3.3378 -2.6547 17 6 -1.3824 3.8948 -2.5210 18 1 -2.0563 3.0892 -2.2296 19 6 -1.8299 4.4663 -3.8668 20 6 -3.1522 5.2167 -3.6663 21 6 -2.8803 6.4554 -2.8092 22 6 -2.0799 6.0727 -1.5976 23 8 -2.0516 6.8433 -0.6614 24 7 -1.3986 4.9309 -1.4959 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9496 31 1 2.2720 2.1232 -1.9978 32 1 0.0674 2.6133 -3.4684 33 1 0.7278 4.1531 -2.8677 34 1 -1.9748 3.6541 -4.5791 35 1 -1.0732 5.1536 -4.2449 36 1 -3.5522 5.5203 -4.6337 37 1 -3.8681 4.5696 -3.1594 38 1 -2.3231 7.1862 -3.3956 39 1 -3.8276 6.8926 -2.4938 40 1 -0.8816 4.7803 -0.6891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288660736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -99.549990 kcal Electronic energy + Delta-G solvation = -21107.423951 eV Core-core repulsion = 17920.977549 eV Total energy + Delta-G solvation = -3186.446402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42540 -38.98333 -36.68830 -35.10367 -33.16413 -32.48072 -31.45495 -30.64806 -27.93995 -26.66866 -23.72942 -22.94336 -22.30258 -20.25846 -19.38814 -19.15043 -17.24147 -17.10534 -16.17990 -15.73556 -15.53188 -15.15483 -14.82524 -14.37932 -14.12935 -13.78606 -13.69667 -13.24522 -12.90241 -12.70681 -12.40788 -11.85941 -11.67541 -11.45625 -11.29713 -11.23487 -11.20254 -11.15116 -10.98966 -10.86687 -10.35433 -10.21253 -9.68766 -9.65468 -9.10949 -9.03867 -8.90801 -8.53047 -7.89009 -6.15336 -4.25163 2.76540 3.22584 3.27896 3.29932 3.31241 3.44298 3.94308 4.32452 4.43644 4.54063 4.61296 4.70652 5.02143 5.15963 5.18594 5.23162 5.40374 5.46740 5.56652 5.64237 5.66847 5.73184 5.81940 6.06754 6.34826 6.40670 6.61251 6.98062 7.00060 7.15237 7.31978 7.39746 7.55968 7.58358 7.68607 7.86009 8.14537 8.38203 8.59841 8.73147 9.05695 9.42390 10.89887 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.004265 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.925862 B = 6563.235761 C = 6804.658433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.496 3.504 15 O -0.549 6.549 16 C -0.160 4.160 17 C 0.158 3.842 18 H 0.083 0.917 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.514 3.486 23 O -0.567 6.567 24 N -0.703 5.703 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 5.204 -14.972 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.281 3.719 15 O -0.429 6.429 16 C -0.201 4.201 17 C 0.052 3.948 18 H 0.101 0.899 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.300 3.700 23 O -0.447 6.447 24 N -0.357 5.357 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.553 5.483 -13.809 17.663 hybrid contribution 1.629 -0.267 -0.027 1.651 sum -7.923 5.215 -13.836 16.776 Atomic orbital electron populations 1.21831 0.98326 0.98005 1.01189 1.21931 0.92607 0.99808 1.02272 1.18796 0.94224 0.89198 0.81026 0.93274 1.21226 0.90730 1.39145 1.06340 0.92143 1.24883 0.98611 0.94757 0.95379 1.69891 1.35159 1.37492 1.09325 0.86462 0.84849 0.77687 0.78185 1.20550 1.21055 1.19872 1.46528 1.14562 1.55619 1.18569 1.20342 0.82971 0.79460 0.89102 1.90683 1.51334 1.60172 1.40678 1.22175 0.97640 1.01867 0.98396 1.20680 0.96087 0.90279 0.87757 0.89872 1.21969 0.97794 1.01063 0.96313 1.21652 0.97661 0.96408 1.00355 1.21643 1.01369 0.99394 0.95107 1.20154 0.79624 0.81113 0.89089 1.90756 1.64302 1.49964 1.39635 1.45718 1.49919 1.17692 1.22374 0.94330 0.95915 0.93133 0.95090 0.88311 0.92531 0.77940 0.87933 0.88780 0.89661 0.90751 0.90538 0.90960 0.88500 0.88454 0.75107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.71 -13.42 5.02 -54.93 -0.28 -13.69 16 14 C 0.50 8.60 6.04 -10.99 -0.07 8.54 16 15 O -0.55 -11.42 11.63 5.56 0.06 -11.35 16 16 C -0.16 -1.84 5.35 -27.88 -0.15 -1.99 16 17 C 0.16 1.78 2.65 -68.37 -0.18 1.60 16 18 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 19 C -0.13 -1.01 5.30 -26.59 -0.14 -1.15 16 20 C -0.12 -0.90 6.03 -26.52 -0.16 -1.06 16 21 C -0.14 -1.29 6.03 -28.11 -0.17 -1.46 16 22 C 0.51 7.52 7.71 -11.87 -0.09 7.43 16 23 O -0.57 -10.94 17.78 5.55 0.10 -10.85 16 24 N -0.70 -10.14 5.00 -54.85 -0.27 -10.41 16 25 H 0.04 0.78 5.65 -51.92 -0.29 0.48 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.36 8.54 -40.82 -0.35 6.01 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.41 7.13 6.84 -40.82 -0.28 6.85 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -31.80 318.72 -7.53 -39.32 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.21 Total: 10.54 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.34 Total: 0.08 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.08 Total: -47.90 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.80 -7.53 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288660736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.226 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds