Wall clock time and date at job start Mon Mar 30 2020 01:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08999 * 109.46921 * 55.00538 * 3 2 1 5 5 C 1.50705 * 109.46689 * 174.99781 * 3 2 1 6 6 H 1.08009 * 119.99783 * 120.00441 * 5 3 2 7 7 C 1.37875 * 120.00236 * 299.99844 * 5 3 2 8 8 N 1.31515 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46937 * 90.00259 * 9 7 5 11 11 H 1.48497 * 109.47358 * 210.00449 * 9 7 5 12 12 H 1.48498 * 109.46912 * 330.00347 * 9 7 5 13 13 N 1.46496 * 109.47512 * 294.99810 * 3 2 1 14 14 C 1.34780 * 119.99842 * 85.00016 * 13 3 2 15 15 O 1.21278 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99875 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47066 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.12704 * 304.47728 * 17 16 14 19 19 C 1.52919 * 109.30008 * 184.99649 * 17 16 14 20 20 C 1.53347 * 108.67100 * 188.93091 * 19 17 16 21 21 C 1.53063 * 108.42518 * 67.53276 * 20 19 17 22 22 C 1.50170 * 109.88883 * 311.08112 * 21 20 19 23 23 O 1.21288 * 118.24905 * 197.62100 * 22 21 20 24 24 N 1.33353 * 123.50873 * 17.61837 * 22 21 20 25 25 H 1.09008 * 109.46862 * 59.99560 * 1 2 3 26 26 H 1.08997 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47150 * 299.99817 * 1 2 3 28 28 H 1.09002 * 109.46766 * 240.00010 * 2 1 3 29 29 H 1.09000 * 109.47126 * 120.00409 * 2 1 3 30 30 H 0.97001 * 119.99943 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00393 * 265.00441 * 13 3 2 32 32 H 1.08990 * 109.47688 * 59.99957 * 16 14 13 33 33 H 1.09006 * 109.47092 * 299.99654 * 16 14 13 34 34 H 1.09002 * 109.60418 * 69.17818 * 19 17 16 35 35 H 1.08992 * 109.74193 * 308.76753 * 19 17 16 36 36 H 1.09007 * 109.67147 * 187.26516 * 20 19 17 37 37 H 1.09000 * 109.67555 * 307.79437 * 20 19 17 38 38 H 1.09012 * 109.40253 * 71.22578 * 21 20 19 39 39 H 1.09001 * 109.40493 * 190.96780 * 21 20 19 40 40 H 0.97001 * 117.94907 * 177.75561 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.4417 2.1140 2.0850 11 1 6.4396 -0.3100 2.1549 12 1 6.6135 0.8415 0.0279 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3392 2.6327 -0.4341 16 6 0.0364 3.3378 -2.6547 17 6 -1.3824 3.8948 -2.5210 18 1 -2.0563 3.0892 -2.2296 19 6 -1.8299 4.4663 -3.8668 20 6 -3.1522 5.2167 -3.6663 21 6 -2.8803 6.4554 -2.8092 22 6 -2.0799 6.0727 -1.5976 23 8 -2.0516 6.8433 -0.6614 24 7 -1.3986 4.9309 -1.4959 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9496 31 1 2.2720 2.1232 -1.9978 32 1 0.0674 2.6133 -3.4684 33 1 0.7278 4.1531 -2.8677 34 1 -1.9748 3.6541 -4.5791 35 1 -1.0732 5.1536 -4.2449 36 1 -3.5522 5.5203 -4.6337 37 1 -3.8681 4.5696 -3.1594 38 1 -2.3231 7.1862 -3.3956 39 1 -3.8276 6.8926 -2.4938 40 1 -0.8816 4.7803 -0.6891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288660736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:48 Heat of formation + Delta-G solvation = -123.279354 kcal Electronic energy + Delta-G solvation = -21108.452933 eV Core-core repulsion = 17920.977549 eV Total energy + Delta-G solvation = -3187.475385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52657 -40.40715 -37.84854 -36.78590 -34.29683 -34.01880 -33.00430 -31.98474 -29.29981 -28.11266 -25.15941 -24.24559 -23.32112 -21.89151 -21.02848 -19.97907 -18.86688 -18.21863 -17.36671 -17.25085 -17.09672 -16.43534 -16.18142 -15.99283 -15.16585 -14.90407 -14.62298 -14.51206 -14.43316 -13.90471 -13.76708 -13.52446 -13.17848 -12.93771 -12.79097 -12.69078 -12.50247 -12.18949 -12.15312 -12.00668 -11.84183 -11.75885 -11.56375 -11.04710 -10.82647 -10.58770 -10.44619 -10.04968 -9.58141 -8.16599 -6.33870 1.43493 1.44242 1.54324 1.65373 1.91563 2.36138 2.40709 2.70202 3.13191 3.62407 3.73831 3.83525 3.99355 4.17315 4.31541 4.38598 4.50683 4.59086 4.64777 4.71451 4.76939 4.80217 4.94247 5.04317 5.07872 5.14327 5.15892 5.28113 5.41928 5.45332 5.57283 5.63923 5.78566 5.81697 5.94992 6.19023 6.51173 6.75856 7.04208 7.22869 7.34514 7.65334 8.88396 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.004265 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.925862 B = 6563.235761 C = 6804.658433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.489 3.511 15 O -0.588 6.588 16 C -0.144 4.144 17 C 0.152 3.848 18 H 0.070 0.930 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.128 4.128 22 C 0.504 3.496 23 O -0.627 6.627 24 N -0.709 5.709 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 5.307 -18.849 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.277 3.723 15 O -0.470 6.470 16 C -0.184 4.184 17 C 0.047 3.953 18 H 0.088 0.912 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.167 4.167 22 C 0.293 3.707 23 O -0.512 6.512 24 N -0.358 5.358 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.162 0.838 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.405 5.574 -17.775 20.868 hybrid contribution 1.540 -0.295 1.226 1.990 sum -7.865 5.279 -16.549 19.068 Atomic orbital electron populations 1.21661 0.96816 0.99020 1.00357 1.21765 0.93858 0.99149 1.01170 1.18305 0.93378 0.89216 0.81738 0.98839 1.21620 0.91717 1.38670 1.06591 0.91029 1.25763 1.03161 0.94484 0.95134 1.70055 1.37012 1.38473 1.09881 0.85414 0.79388 0.77280 0.78667 1.20744 1.21057 1.18220 1.46281 1.15864 1.55983 1.17320 1.21423 0.81652 0.78447 0.90783 1.90680 1.52313 1.61255 1.42783 1.22190 0.97914 1.02696 0.95600 1.20966 0.95791 0.89417 0.89130 0.91173 1.22007 0.98021 1.02273 0.93965 1.21682 0.97591 0.94947 1.01302 1.21698 1.00733 1.01137 0.93145 1.21194 0.79232 0.80277 0.90020 1.90717 1.66408 1.51837 1.42201 1.45989 1.49110 1.18414 1.22323 0.93038 0.93831 0.96019 0.93876 0.91507 0.92730 0.76084 0.83779 0.86942 0.86545 0.89350 0.87084 0.91646 0.86386 0.88036 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.79 2.24 44.25 0.10 13.89 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -28.46 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -52.53 11.29 21.45 0.24 -52.28 16 9 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 N -0.71 -26.48 5.02 -446.10 -2.24 -28.72 16 14 C 0.49 16.67 6.04 87.66 0.53 17.20 16 15 O -0.59 -25.27 11.63 -3.02 -0.04 -25.31 16 16 C -0.14 -2.87 5.35 29.85 0.16 -2.71 16 17 C 0.15 3.07 2.65 45.11 0.12 3.19 16 18 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 19 C -0.13 -1.30 5.30 30.68 0.16 -1.14 16 20 C -0.12 -1.25 6.03 30.73 0.19 -1.06 16 21 C -0.13 -2.14 6.03 29.70 0.18 -1.96 16 22 C 0.50 14.73 7.71 87.71 0.68 15.41 16 23 O -0.63 -25.28 17.78 -3.05 -0.05 -25.33 16 24 N -0.71 -20.41 5.00 -446.63 -2.23 -22.64 16 25 H 0.05 2.06 5.65 -2.38 -0.01 2.05 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 3.66 5.95 -2.39 -0.01 3.64 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.40 12.49 8.54 -92.71 -0.79 11.70 16 32 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.75 8.11 -2.39 -0.02 0.73 16 36 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.39 14.18 6.84 -92.71 -0.63 13.54 16 Total: -1.00 -75.33 318.72 0.89 -74.44 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.38 Total: 30.35 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.56 Total: 5.56 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.23 Total: -103.65 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.09 Total: -50.64 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.33 0.89 -74.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288660736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.843 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds