Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.30046 * 54.58442 * 17 16 14 19 19 C 1.52919 * 109.29675 * 173.96371 * 17 16 14 20 20 C 1.53344 * 108.67455 * 171.06337 * 19 17 16 21 21 C 1.53069 * 108.42259 * 292.46918 * 20 19 17 22 22 C 1.50170 * 109.89428 * 48.89966 * 21 20 19 23 23 O 1.21279 * 118.24884 * 162.39308 * 22 21 20 24 24 N 1.33356 * 123.50643 * 342.41433 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 33 33 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 34 34 H 1.09000 * 109.60135 * 290.81534 * 19 17 16 35 35 H 1.08996 * 109.60521 * 51.30476 * 19 17 16 36 36 H 1.09000 * 109.67875 * 172.73027 * 20 19 17 37 37 H 1.09005 * 109.70223 * 52.21516 * 20 19 17 38 38 H 1.08993 * 109.40011 * 288.76605 * 21 20 19 39 39 H 1.09009 * 109.39913 * 169.02939 * 21 20 19 40 40 H 0.97004 * 117.94449 * 182.19977 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 1 -1.4332 4.5452 -1.6479 19 6 -1.7270 4.7054 -3.7709 20 6 -3.2166 5.0669 -3.7264 21 6 -4.0314 3.7805 -3.8824 22 6 -3.5172 2.7323 -2.9380 23 8 -4.2293 1.7818 -2.6925 24 7 -2.3195 2.7908 -2.3545 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 0.7278 4.1531 -2.8677 33 1 0.0674 2.6131 -3.4685 34 1 -1.1300 5.6172 -3.7915 35 1 -1.5215 4.1106 -4.6608 36 1 -3.4526 5.7518 -4.5408 37 1 -3.4523 5.5371 -2.7716 38 1 -3.9445 3.4189 -4.9069 39 1 -5.0786 3.9860 -3.6599 40 1 -2.0556 2.0527 -1.7831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288660739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -123.347449 kcal Electronic energy + Delta-G solvation = -21183.291795 eV Core-core repulsion = 17995.813457 eV Total energy + Delta-G solvation = -3187.478337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53281 -40.40530 -37.84687 -36.79031 -34.29028 -34.01749 -33.06191 -31.95757 -29.30954 -28.11483 -25.18923 -24.21230 -23.33770 -21.92154 -21.02898 -19.98359 -18.86086 -18.21521 -17.41794 -17.20914 -17.09712 -16.41525 -16.24998 -15.83933 -15.33368 -14.97785 -14.62847 -14.44992 -14.21573 -14.02482 -13.89183 -13.49715 -13.17664 -12.90570 -12.81549 -12.65012 -12.48062 -12.22872 -12.18222 -12.01452 -11.84531 -11.76205 -11.59919 -11.05985 -10.82321 -10.58565 -10.43890 -10.05151 -9.58785 -8.15443 -6.33036 1.45205 1.46604 1.54466 1.65633 1.91396 2.36930 2.40470 2.70200 3.14159 3.62162 3.73647 3.83126 3.99282 4.17212 4.31530 4.37806 4.46594 4.53881 4.65521 4.70411 4.74737 4.78822 4.94295 5.03775 5.04782 5.14302 5.15731 5.24815 5.41173 5.42184 5.56042 5.63992 5.78666 5.80218 5.94473 6.17881 6.50820 6.76367 7.04124 7.23055 7.35253 7.65186 8.89463 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037053 B = 0.004263 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.487015 B = 6565.812031 C = 7103.435447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.706 5.706 14 C 0.489 3.511 15 O -0.589 6.589 16 C -0.144 4.144 17 C 0.151 3.849 18 H 0.068 0.932 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.128 4.128 22 C 0.504 3.496 23 O -0.625 6.625 24 N -0.709 5.709 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 11.179 -16.431 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.354 5.354 14 C 0.277 3.723 15 O -0.471 6.471 16 C -0.184 4.184 17 C 0.046 3.954 18 H 0.086 0.914 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.167 4.167 22 C 0.293 3.707 23 O -0.509 6.509 24 N -0.358 5.358 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.092 10.793 -15.613 20.262 hybrid contribution 1.275 -0.859 0.973 1.819 sum -5.817 9.934 -14.640 18.624 Atomic orbital electron populations 1.21666 0.97158 0.98845 1.00201 1.21785 0.93481 0.99619 1.01105 1.18290 0.93487 0.88895 0.81825 0.98452 1.21582 0.91575 1.38823 1.06615 0.90838 1.25782 1.03238 0.94443 0.95113 1.70052 1.37138 1.38434 1.09867 0.85444 0.79235 0.78498 0.77435 1.19459 1.21517 1.18964 1.46279 1.15924 1.55901 1.17345 1.21427 0.81625 0.78642 0.90648 1.90682 1.52244 1.61337 1.42806 1.22190 0.98077 1.03397 0.94734 1.20950 0.86447 0.87575 1.00381 0.91414 1.22011 0.97418 1.01218 0.95603 1.21682 0.93810 0.95885 1.04185 1.21697 1.01884 0.93827 0.99318 1.21169 0.80640 0.87679 0.81172 1.90715 1.56909 1.37683 1.65632 1.45967 1.17126 1.24388 1.48340 0.93616 0.95608 0.94250 0.91322 0.94203 0.92729 0.76071 0.83985 0.86676 0.86703 0.89216 0.87111 0.91744 0.86317 0.88031 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.52 71.98 0.61 -4.93 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 13.84 2.24 44.24 0.10 13.94 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -28.17 8.73 25.60 0.22 -27.95 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.76 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 13 N -0.71 -26.51 5.02 -446.11 -2.24 -28.75 16 14 C 0.49 16.74 6.04 87.66 0.53 17.27 16 15 O -0.59 -25.39 11.69 -3.03 -0.04 -25.43 16 16 C -0.14 -2.89 5.34 29.85 0.16 -2.74 16 17 C 0.15 3.09 2.64 45.11 0.12 3.21 16 18 H 0.07 1.62 7.94 -2.39 -0.02 1.60 16 19 C -0.13 -1.32 5.30 30.68 0.16 -1.16 16 20 C -0.12 -1.26 6.03 30.73 0.19 -1.08 16 21 C -0.13 -2.10 6.03 29.71 0.18 -1.92 16 22 C 0.50 14.44 7.71 87.71 0.68 15.12 16 23 O -0.63 -24.61 17.78 -3.03 -0.05 -24.66 16 24 N -0.71 -20.02 5.01 -446.66 -2.24 -22.25 16 25 H 0.04 1.96 5.65 -2.39 -0.01 1.95 16 26 H 0.02 1.27 7.85 -2.39 -0.02 1.25 16 27 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.07 3.82 5.95 -2.39 -0.01 3.80 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.40 12.48 8.54 -92.71 -0.79 11.69 16 32 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.75 8.11 -2.39 -0.02 0.73 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.39 13.76 6.94 -92.71 -0.64 13.12 16 Total: -1.00 -74.47 318.84 0.88 -73.59 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.39 Total: 31.00 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.56 Total: 5.19 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -4.23 Total: -103.11 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.09 Total: -50.09 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -74.47 0.88 -73.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288660739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.758 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds