Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 N 1.46503 * 109.46880 * 119.99675 * 2 1 3 5 5 C 1.46764 * 124.34698 * 120.00207 * 4 2 1 6 6 C 1.54480 * 105.47241 * 196.99555 * 5 4 2 7 7 H 1.09002 * 110.96643 * 216.46708 * 6 5 4 8 8 N 1.46496 * 110.97196 * 92.74128 * 6 5 4 9 9 C 1.34774 * 120.00526 * 155.00104 * 8 6 5 10 10 O 1.21289 * 119.99546 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00200 * 180.02562 * 9 8 6 12 12 C 1.53008 * 109.47025 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46871 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00293 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99740 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00135 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00099 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47663 * 89.99775 * 17 15 13 19 19 H 1.48504 * 109.47083 * 210.00102 * 17 15 13 20 20 H 1.48502 * 109.46760 * 329.99542 * 17 15 13 21 21 C 1.54784 * 101.69261 * 334.38904 * 6 5 4 22 22 C 1.34420 * 124.35251 * 299.97696 * 4 2 1 23 23 O 1.21283 * 124.93917 * 359.57548 * 22 4 2 24 24 H 1.08999 * 109.47437 * 300.00283 * 1 2 3 25 25 H 1.09001 * 109.47341 * 59.99851 * 1 2 3 26 26 H 1.09003 * 109.47410 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47271 * 240.00024 * 2 1 3 28 28 H 1.09002 * 109.46930 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47392 * 299.99511 * 3 2 1 30 30 H 1.09005 * 109.47045 * 59.99975 * 3 2 1 31 31 H 1.09003 * 110.24343 * 315.99368 * 5 4 2 32 32 H 1.09004 * 110.24843 * 77.90470 * 5 4 2 33 33 H 0.97009 * 119.99628 * 334.99999 * 8 6 5 34 34 H 1.09002 * 109.46665 * 299.99069 * 11 9 8 35 35 H 1.08998 * 109.47307 * 59.99463 * 11 9 8 36 36 H 1.08998 * 109.46556 * 299.99893 * 12 11 9 37 37 H 1.09000 * 109.46445 * 59.99476 * 12 11 9 38 38 H 0.97002 * 120.00368 * 179.97438 * 16 15 13 39 39 H 1.08996 * 110.61291 * 266.40068 * 21 6 5 40 40 H 1.09001 * 110.42713 * 143.71017 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8655 -1.8887 1.1728 6 6 2.7612 -2.4950 2.5899 7 1 3.7144 -2.9208 2.9031 8 7 1.6956 -3.4983 2.6538 9 6 1.7466 -4.4776 3.5783 10 8 2.6750 -4.5286 4.3571 11 6 0.6507 -5.5100 3.6436 12 6 0.9488 -6.4996 4.7718 13 6 -0.1474 -7.5316 4.8375 14 1 -0.9738 -7.4865 4.1438 15 6 -0.0952 -8.5334 5.7834 16 7 0.9109 -8.5880 6.6286 17 14 -1.4536 -9.8130 5.8644 18 1 -1.1049 -10.9613 4.9898 19 1 -1.6059 -10.2852 7.2641 20 1 -2.7300 -9.2097 5.4039 21 6 2.4091 -1.2495 3.4388 22 6 1.7483 -0.3080 2.4563 23 8 1.0769 0.6551 2.7610 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.4963 -2.5973 0.4313 32 1 3.8978 -1.6166 0.9526 33 1 0.9532 -3.4577 2.0306 34 1 -0.3022 -5.0166 3.8350 35 1 0.5988 -6.0453 2.6955 36 1 1.9017 -6.9928 4.5800 37 1 1.0011 -5.9644 5.7200 38 1 0.9474 -9.2926 7.2943 39 1 3.3116 -0.7986 3.8513 40 1 1.7159 -1.5164 4.2366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291646967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -110.753562 kcal Electronic energy + Delta-G solvation = -20500.301666 eV Core-core repulsion = 17313.369440 eV Total energy + Delta-G solvation = -3186.932225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85173 -40.39320 -37.68721 -36.48342 -35.53085 -34.07660 -32.87172 -30.46441 -28.63137 -28.09826 -27.48301 -24.10716 -23.45009 -22.34434 -21.29278 -19.86087 -18.83667 -17.94492 -17.68849 -17.41652 -16.57747 -16.45904 -16.26411 -15.91197 -15.14055 -14.87713 -14.73421 -14.56887 -14.35314 -14.20376 -13.78632 -13.68054 -13.22677 -13.19289 -12.90283 -12.81076 -12.74965 -12.53925 -12.45947 -12.20133 -12.09895 -11.89623 -11.62153 -11.28996 -10.76971 -10.74385 -10.55381 -10.11494 -9.72695 -8.17034 -6.30613 1.42899 1.45284 1.52591 1.56109 1.70463 1.97564 2.18415 2.44966 3.16162 3.31033 3.44720 3.76776 3.99668 4.06161 4.12532 4.20682 4.33243 4.51674 4.56343 4.57994 4.60854 4.73996 4.75026 4.79598 4.87786 4.90559 4.92861 5.11974 5.25759 5.32541 5.46315 5.53519 5.66272 5.69253 5.87518 6.10504 6.19459 6.56365 6.88201 7.14730 7.33370 7.39724 8.95432 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036381 B = 0.003364 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.440941 B = 8321.036606 C = 8614.018397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.611 5.611 5 C 0.104 3.896 6 C 0.132 3.868 7 H 0.114 0.886 8 N -0.712 5.712 9 C 0.518 3.482 10 O -0.580 6.580 11 C -0.122 4.122 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.257 1.257 21 C -0.170 4.170 22 C 0.517 3.483 23 O -0.572 6.572 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.414 0.586 34 H 0.098 0.902 35 H 0.108 0.892 36 H -0.014 1.014 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.125 0.875 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 16.628 -19.370 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C -0.222 4.222 4 N -0.344 5.344 5 C -0.018 4.018 6 C 0.026 3.974 7 H 0.132 0.868 8 N -0.365 5.365 9 C 0.307 3.693 10 O -0.458 6.458 11 C -0.161 4.161 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.093 0.907 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.181 1.181 21 C -0.211 4.211 22 C 0.306 3.694 23 O -0.452 6.452 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.005 0.995 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.018 17.036 -18.627 25.422 hybrid contribution -0.755 -0.617 0.665 1.181 sum 2.263 16.418 -17.962 24.440 Atomic orbital electron populations 1.22167 0.95192 1.02513 1.02549 1.21193 0.94152 0.93288 0.86748 1.22146 1.01532 0.95919 1.02583 1.48580 1.50702 1.29486 1.05681 1.22592 0.97259 0.86077 0.95869 1.21880 0.92880 0.87089 0.95515 0.86787 1.45912 1.26837 1.27755 1.36027 1.21235 0.87003 0.81899 0.79206 1.90672 1.37142 1.75796 1.42227 1.21646 0.96843 0.95428 1.02207 1.18687 0.95318 0.92991 0.92572 1.21726 1.08306 1.11377 1.16702 0.90744 1.26109 0.98547 1.00606 0.95139 1.70169 1.32988 1.34456 1.20072 0.85353 0.79205 0.78660 0.77221 1.19584 1.21311 1.18093 1.22868 1.03492 0.96309 0.98470 1.20982 0.79218 0.84338 0.84889 1.90671 1.41552 1.30631 1.82346 0.94403 0.89610 0.91964 0.85838 0.91873 0.89650 0.94300 0.86946 0.86661 0.74887 0.88371 0.87424 0.99522 1.00052 0.92881 0.85697 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.20 71.98 0.66 -1.77 16 2 C 0.15 1.83 3.47 44.99 0.16 1.98 16 3 C -0.16 -2.24 9.20 71.98 0.66 -1.58 16 4 N -0.61 -9.47 2.83 -794.04 -2.25 -11.72 16 5 C 0.10 1.11 6.93 86.83 0.60 1.71 16 6 C 0.13 2.50 3.52 46.10 0.16 2.66 16 7 H 0.11 2.37 7.54 -2.39 -0.02 2.35 16 8 N -0.71 -16.37 5.14 -437.28 -2.25 -18.61 16 9 C 0.52 18.27 7.83 87.66 0.69 18.96 16 10 O -0.58 -26.20 15.62 -3.06 -0.05 -26.25 16 11 C -0.12 -4.64 5.64 29.85 0.17 -4.47 16 12 C 0.04 2.29 4.26 29.85 0.13 2.41 16 13 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 14 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 15 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 16 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 17 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 C -0.17 -3.78 6.60 30.64 0.20 -3.57 16 22 C 0.52 12.22 7.41 87.90 0.65 12.87 16 23 O -0.57 -18.31 15.12 -3.04 -0.05 -18.36 16 24 H 0.04 0.83 6.80 -2.39 -0.02 0.81 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.12 0.74 8.07 -2.39 -0.02 0.72 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.81 6.77 -2.38 -0.02 0.79 16 31 H 0.11 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.41 7.14 8.66 -92.70 -0.80 6.33 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.38 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 37 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 Total: -1.00 -81.19 332.88 2.72 -78.47 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.22 Total: 10.20 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.77 Total: -1.06 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -4.21 Total: -89.09 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.09 Total: -44.60 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.19 2.72 -78.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291646967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.283 kcal (2) G-P(sol) polarization free energy of solvation -81.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds