Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 N 1.46498 * 109.46733 * 120.00232 * 2 1 3 5 5 C 1.46757 * 124.35339 * 120.00408 * 4 2 1 6 6 C 1.54477 * 105.47826 * 162.98032 * 5 4 2 7 7 C 1.54627 * 101.76535 * 25.41574 * 6 5 4 8 8 H 1.09002 * 110.48475 * 216.39434 * 7 6 5 9 9 N 1.46499 * 110.48829 * 93.88147 * 7 6 5 10 10 C 1.34774 * 119.99966 * 155.00063 * 9 7 6 11 11 O 1.21279 * 119.99931 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99956 * 179.97438 * 10 9 7 13 13 C 1.52992 * 109.47257 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 C 1.34420 * 124.34934 * 299.99717 * 4 2 1 23 23 O 1.21286 * 124.94227 * 0.44839 * 22 4 2 24 24 H 1.09002 * 109.47132 * 299.99992 * 1 2 3 25 25 H 1.09004 * 109.46762 * 59.99619 * 1 2 3 26 26 H 1.08993 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47132 * 240.00008 * 2 1 3 28 28 H 1.09002 * 109.47149 * 60.00018 * 3 2 1 29 29 H 1.08998 * 109.47249 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47724 * 299.99589 * 3 2 1 31 31 H 1.09002 * 110.24711 * 43.97600 * 5 4 2 32 32 H 1.09007 * 110.31822 * 282.02075 * 5 4 2 33 33 H 1.09000 * 110.96837 * 267.29188 * 6 5 4 34 34 H 1.09002 * 111.00181 * 143.54486 * 6 5 4 35 35 H 0.96999 * 119.99984 * 334.99908 * 9 7 6 36 36 H 1.09004 * 109.46932 * 59.99775 * 12 10 9 37 37 H 1.09005 * 109.47238 * 300.00152 * 12 10 9 38 38 H 1.09004 * 109.47330 * 60.00023 * 13 12 10 39 39 H 1.08997 * 109.47279 * 300.00509 * 13 12 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 3.4722 -1.9923 2.5897 7 6 2.4202 -1.2417 3.4388 8 1 2.9052 -0.6763 4.2345 9 7 1.4477 -2.1829 3.9996 10 6 0.7781 -1.8686 5.1262 11 8 0.9803 -0.8064 5.6754 12 6 -0.2228 -2.8365 5.7028 13 6 -0.8355 -2.2410 6.9719 14 6 -1.8368 -3.2087 7.5481 15 1 -2.0183 -4.1538 7.0579 16 6 -2.5220 -2.8871 8.7006 17 7 -2.2977 -1.7381 9.3000 18 14 -3.7626 -4.0868 9.4153 19 1 -3.0815 -5.3640 9.7474 20 1 -4.3574 -3.5088 10.6470 21 1 -4.8348 -4.3419 8.4199 22 6 1.7479 -0.3083 2.4562 23 8 1.0639 0.6457 2.7610 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 3.6564 -1.7771 0.4311 32 1 2.2657 -2.7723 0.9538 33 1 4.4400 -1.4931 2.6370 34 1 3.5565 -3.0328 2.9035 35 1 1.2857 -3.0323 3.5601 36 1 0.2772 -3.7740 5.9464 37 1 -1.0098 -3.0237 4.9722 38 1 -1.3354 -1.3034 6.7286 39 1 -0.0483 -2.0542 7.7022 40 1 -2.7800 -1.5118 10.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291741657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -81.519774 kcal Electronic energy + Delta-G solvation = -20768.024112 eV Core-core repulsion = 17582.359559 eV Total energy + Delta-G solvation = -3185.664553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90234 -38.78810 -36.48862 -35.62175 -33.41247 -33.11392 -30.97556 -29.51519 -27.38766 -27.36602 -25.45056 -22.72847 -22.30424 -21.43513 -19.75430 -18.96245 -17.21398 -16.95764 -16.39308 -15.64588 -15.44143 -15.02943 -14.93864 -14.38366 -14.09605 -13.93587 -13.78650 -13.30846 -13.09233 -12.99542 -12.27967 -12.23175 -12.19416 -12.03909 -11.82568 -11.55040 -11.45055 -11.29498 -11.13015 -10.88581 -10.59155 -10.04655 -9.91446 -9.62961 -9.16128 -9.00485 -8.84841 -8.68857 -8.27997 -5.91976 -3.96641 2.44646 2.76464 3.27588 3.36910 3.41368 3.43072 3.64649 4.16396 4.23380 4.50511 4.54586 4.67530 4.79562 4.90010 4.96908 5.12489 5.39036 5.42594 5.43435 5.44959 5.50822 5.52501 5.59321 5.68766 5.81303 6.02699 6.10627 6.24233 6.25842 6.51258 6.59657 6.91124 7.02612 7.77493 7.81927 7.90998 8.11758 8.20817 8.42123 8.78806 9.11762 9.66499 11.18940 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003715 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.591948 B = 7534.696436 C = 7753.940791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 C -0.168 4.168 4 N -0.621 5.621 5 C 0.103 3.897 6 C -0.141 4.141 7 C 0.114 3.886 8 H 0.119 0.881 9 N -0.728 5.728 10 C 0.509 3.491 11 O -0.517 6.517 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.507 3.493 23 O -0.502 6.502 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -2.271 -22.094 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 C -0.226 4.226 4 N -0.358 5.358 5 C -0.020 4.020 6 C -0.179 4.179 7 C 0.005 3.995 8 H 0.137 0.863 9 N -0.385 5.385 10 C 0.298 3.702 11 O -0.389 6.389 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.292 3.708 23 O -0.374 6.374 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.801 -0.788 -21.388 24.938 hybrid contribution -0.726 -1.098 0.031 1.316 sum 12.075 -1.886 -21.356 24.606 Atomic orbital electron populations 1.22192 0.94662 1.02459 1.03415 1.20907 0.94572 0.93041 0.86276 1.22186 1.01079 0.95947 1.03412 1.48492 1.52083 1.29102 1.06145 1.22079 0.93975 0.87912 0.98078 1.22925 0.98529 1.02794 0.93666 1.21494 0.90209 0.91804 0.96030 0.86324 1.46042 1.43657 1.20496 1.28280 1.21688 0.81098 0.88569 0.78888 1.90710 1.64081 1.24652 1.59502 1.21858 0.95921 0.97498 1.01384 1.18905 0.95542 0.96190 0.89471 1.21177 1.22733 1.03253 1.09468 0.92671 1.25030 0.97122 0.95285 0.96941 1.69995 1.41815 1.21819 1.19111 0.86648 0.81560 0.81207 0.78474 1.20266 1.21290 1.20273 1.21361 0.80761 0.85128 0.83584 1.90739 1.37350 1.28217 1.81106 0.90792 0.91587 0.92491 0.89688 0.90872 0.92587 0.91554 0.90304 0.91107 0.88734 0.88271 0.76605 0.90127 0.90281 0.95758 0.95748 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.20 37.16 0.34 -1.42 16 2 C 0.15 1.42 3.47 -67.93 -0.24 1.19 16 3 C -0.17 -1.59 9.20 37.16 0.34 -1.25 16 4 N -0.62 -6.44 2.83 -164.84 -0.47 -6.91 16 5 C 0.10 0.66 7.30 -3.13 -0.02 0.64 16 6 C -0.14 -0.98 6.78 -25.10 -0.17 -1.15 16 7 C 0.11 1.46 3.28 -67.94 -0.22 1.24 16 8 H 0.12 1.78 7.55 -51.93 -0.39 1.39 16 9 N -0.73 -10.24 5.10 -53.82 -0.27 -10.51 16 10 C 0.51 10.15 7.83 -10.99 -0.09 10.06 16 11 O -0.52 -12.87 15.63 5.56 0.09 -12.79 16 12 C -0.13 -2.62 5.64 -27.89 -0.16 -2.78 16 13 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 14 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.95 13.29 55.43 0.74 -27.21 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.51 7.49 7.05 -10.86 -0.08 7.42 16 23 O -0.50 -9.94 15.12 5.55 0.08 -9.85 16 24 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 28 H 0.07 0.94 6.80 -51.93 -0.35 0.58 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.40 4.15 8.63 -40.82 -0.35 3.79 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -38.02 332.82 -7.13 -45.16 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.47 Total: -0.73 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.82 Total: 0.90 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.00 Total: -44.63 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -38.02 -7.13 -45.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291741657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.363 kcal (2) G-P(sol) polarization free energy of solvation -38.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds