Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 N 1.46498 * 109.46733 * 120.00232 * 2 1 3 5 5 C 1.46757 * 124.35339 * 120.00408 * 4 2 1 6 6 C 1.54477 * 105.47826 * 162.98032 * 5 4 2 7 7 C 1.54627 * 101.76535 * 25.41574 * 6 5 4 8 8 H 1.09002 * 110.48475 * 216.39434 * 7 6 5 9 9 N 1.46499 * 110.48829 * 93.88147 * 7 6 5 10 10 C 1.34774 * 119.99966 * 155.00063 * 9 7 6 11 11 O 1.21279 * 119.99931 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99956 * 179.97438 * 10 9 7 13 13 C 1.52992 * 109.47257 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 C 1.34420 * 124.34934 * 299.99717 * 4 2 1 23 23 O 1.21286 * 124.94227 * 0.44839 * 22 4 2 24 24 H 1.09002 * 109.47132 * 299.99992 * 1 2 3 25 25 H 1.09004 * 109.46762 * 59.99619 * 1 2 3 26 26 H 1.08993 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47132 * 240.00008 * 2 1 3 28 28 H 1.09002 * 109.47149 * 60.00018 * 3 2 1 29 29 H 1.08998 * 109.47249 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47724 * 299.99589 * 3 2 1 31 31 H 1.09002 * 110.24711 * 43.97600 * 5 4 2 32 32 H 1.09007 * 110.31822 * 282.02075 * 5 4 2 33 33 H 1.09000 * 110.96837 * 267.29188 * 6 5 4 34 34 H 1.09002 * 111.00181 * 143.54486 * 6 5 4 35 35 H 0.96999 * 119.99984 * 334.99908 * 9 7 6 36 36 H 1.09004 * 109.46932 * 59.99775 * 12 10 9 37 37 H 1.09005 * 109.47238 * 300.00152 * 12 10 9 38 38 H 1.09004 * 109.47330 * 60.00023 * 13 12 10 39 39 H 1.08997 * 109.47279 * 300.00509 * 13 12 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 3.4722 -1.9923 2.5897 7 6 2.4202 -1.2417 3.4388 8 1 2.9052 -0.6763 4.2345 9 7 1.4477 -2.1829 3.9996 10 6 0.7781 -1.8686 5.1262 11 8 0.9803 -0.8064 5.6754 12 6 -0.2228 -2.8365 5.7028 13 6 -0.8355 -2.2410 6.9719 14 6 -1.8368 -3.2087 7.5481 15 1 -2.0183 -4.1538 7.0579 16 6 -2.5220 -2.8871 8.7006 17 7 -2.2977 -1.7381 9.3000 18 14 -3.7626 -4.0868 9.4153 19 1 -3.0815 -5.3640 9.7474 20 1 -4.3574 -3.5088 10.6470 21 1 -4.8348 -4.3419 8.4199 22 6 1.7479 -0.3083 2.4562 23 8 1.0639 0.6457 2.7610 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 3.6564 -1.7771 0.4311 32 1 2.2657 -2.7723 0.9538 33 1 4.4400 -1.4931 2.6370 34 1 3.5565 -3.0328 2.9035 35 1 1.2857 -3.0323 3.5601 36 1 0.2772 -3.7740 5.9464 37 1 -1.0098 -3.0237 4.9722 38 1 -1.3354 -1.3034 6.7286 39 1 -0.0483 -2.0542 7.7022 40 1 -2.7800 -1.5118 10.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291741657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -110.937895 kcal Electronic energy + Delta-G solvation = -20769.299778 eV Core-core repulsion = 17582.359559 eV Total energy + Delta-G solvation = -3186.940219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.93369 -40.30420 -37.60106 -36.64279 -35.56621 -34.29763 -32.95187 -30.45262 -28.53901 -28.16551 -27.27870 -24.04647 -23.35803 -22.65524 -21.37975 -19.95121 -18.88901 -18.13780 -17.75964 -17.12795 -16.64510 -16.50829 -16.22388 -15.91964 -15.31348 -14.90633 -14.75444 -14.53267 -14.27916 -14.13749 -14.03420 -13.84635 -13.26233 -13.04956 -12.84604 -12.77788 -12.58133 -12.46349 -12.42540 -12.15242 -12.08752 -11.92636 -11.64787 -11.33934 -11.26706 -10.77266 -10.56632 -9.94441 -9.69560 -8.17950 -6.33043 1.28750 1.41718 1.47020 1.54771 1.66440 2.00002 2.36700 2.48426 3.14693 3.37371 3.43551 3.85618 3.97890 4.03038 4.07681 4.19383 4.28791 4.46371 4.54045 4.60616 4.66642 4.66728 4.81403 4.84385 4.86188 4.97353 5.03725 5.09788 5.21776 5.26638 5.38062 5.49093 5.60764 5.72180 5.84267 6.12908 6.16036 6.53910 6.85441 7.16829 7.31933 7.37529 8.94852 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003715 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.591948 B = 7534.696436 C = 7753.940791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.609 5.609 5 C 0.097 3.903 6 C -0.122 4.122 7 C 0.104 3.896 8 H 0.087 0.913 9 N -0.699 5.699 10 C 0.508 3.492 11 O -0.581 6.581 12 C -0.115 4.115 13 C 0.041 3.959 14 C -0.544 4.544 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.940 5.940 18 Si 0.978 3.022 19 H -0.259 1.259 20 H -0.289 1.289 21 H -0.263 1.263 22 C 0.492 3.508 23 O -0.570 6.570 24 H 0.025 0.975 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.115 0.885 37 H 0.101 0.899 38 H -0.027 1.027 39 H -0.016 1.016 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.153 -6.128 -25.205 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.047 3.953 3 C -0.223 4.223 4 N -0.344 5.344 5 C -0.024 4.024 6 C -0.160 4.160 7 C -0.006 4.006 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.297 3.703 11 O -0.459 6.459 12 C -0.155 4.155 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.207 4.207 17 N -0.580 5.580 18 Si 0.801 3.199 19 H -0.183 1.183 20 H -0.214 1.214 21 H -0.187 1.187 22 C 0.278 3.722 23 O -0.448 6.448 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.261 0.739 36 H 0.133 0.867 37 H 0.119 0.881 38 H -0.008 1.008 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.883 -4.744 -24.610 28.651 hybrid contribution -0.987 0.151 0.903 1.346 sum 12.896 -4.593 -23.707 27.376 Atomic orbital electron populations 1.22169 0.95946 1.02286 1.02100 1.21172 0.93667 0.93276 0.87160 1.22155 1.01722 0.96215 1.02210 1.48637 1.51132 1.29694 1.04920 1.22509 0.94697 0.86774 0.98432 1.23003 0.96996 1.03654 0.92314 1.21689 0.91022 0.92103 0.95749 0.89464 1.45617 1.42344 1.21406 1.26216 1.21542 0.81223 0.87387 0.80157 1.90696 1.66194 1.27113 1.61870 1.21625 0.96894 0.98296 0.98644 1.18693 0.94367 0.94624 0.91989 1.21690 1.22649 1.04065 1.09768 0.90252 1.26212 0.99642 0.97317 0.97514 1.70199 1.43453 1.24547 1.19772 0.85319 0.78518 0.78608 0.77451 1.18290 1.21431 1.18719 1.21730 0.80315 0.84624 0.85548 1.90709 1.40463 1.31144 1.82453 0.95561 0.89457 0.92009 0.84991 0.95312 0.91405 0.89525 0.86535 0.88661 0.86913 0.85360 0.73851 0.86674 0.88094 1.00835 0.99776 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.20 71.98 0.66 -2.68 16 2 C 0.15 2.37 3.47 44.99 0.16 2.53 16 3 C -0.17 -2.98 9.20 71.98 0.66 -2.32 16 4 N -0.61 -11.26 2.83 -794.03 -2.25 -13.51 16 5 C 0.10 0.75 7.30 86.83 0.63 1.38 16 6 C -0.12 -1.21 6.78 31.65 0.21 -1.00 16 7 C 0.10 2.62 3.28 44.99 0.15 2.77 16 8 H 0.09 2.79 7.55 -2.39 -0.02 2.77 16 9 N -0.70 -19.03 5.10 -442.57 -2.26 -21.29 16 10 C 0.51 20.94 7.83 87.66 0.69 21.63 16 11 O -0.58 -31.31 15.63 -3.03 -0.05 -31.35 16 12 C -0.11 -4.77 5.64 29.85 0.17 -4.60 16 13 C 0.04 2.38 4.26 29.85 0.13 2.51 16 14 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 15 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 16 C -0.01 -0.57 5.46 84.66 0.46 -0.11 16 17 N -0.94 -61.60 13.29 21.45 0.28 -61.31 16 18 Si 0.98 45.12 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 C 0.49 14.88 7.05 87.90 0.62 15.50 16 23 O -0.57 -24.62 15.12 -3.05 -0.05 -24.67 16 24 H 0.03 0.78 6.77 -2.39 -0.02 0.76 16 25 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.13 0.98 8.07 -2.39 -0.02 0.96 16 28 H 0.03 0.78 6.80 -2.39 -0.02 0.76 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.13 0.62 8.07 -2.39 -0.02 0.60 16 35 H 0.42 7.41 8.63 -92.71 -0.80 6.61 16 36 H 0.12 3.97 8.14 -2.38 -0.02 3.95 16 37 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 38 H -0.03 -1.81 8.10 -2.38 -0.02 -1.83 16 39 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 40 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -94.63 332.82 2.71 -91.92 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.22 Total: 8.98 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 4.77 Total: 4.09 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.22 Total: -96.11 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.09 Total: -56.02 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -94.63 2.71 -91.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291741657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.021 kcal (2) G-P(sol) polarization free energy of solvation -94.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds