Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 N 1.46511 * 109.47121 * 185.61272 * 3 2 1 5 5 C 1.37094 * 120.00101 * 82.75448 * 4 3 2 6 6 H 1.07997 * 119.99533 * 171.18554 * 5 4 3 7 7 C 1.38949 * 120.00188 * 351.18226 * 5 4 3 8 8 N 1.31414 * 119.99880 * 1.56056 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 181.56437 * 7 5 4 10 10 H 1.48501 * 109.47341 * 90.00006 * 9 7 5 11 11 H 1.48501 * 109.46938 * 209.99896 * 9 7 5 12 12 H 1.48502 * 109.47051 * 329.99743 * 9 7 5 13 13 C 1.34779 * 119.99381 * 262.75381 * 4 3 2 14 14 O 1.21295 * 119.99575 * 184.64319 * 13 4 3 15 15 C 1.50694 * 120.00293 * 4.64727 * 13 4 3 16 16 H 1.08999 * 109.30240 * 32.36901 * 15 13 4 17 17 C 1.52924 * 109.30118 * 272.99355 * 15 13 4 18 18 C 1.53339 * 108.67677 * 188.93543 * 17 15 13 19 19 H 1.09004 * 109.67535 * 307.79532 * 18 17 15 20 20 C 1.53000 * 109.67447 * 187.30068 * 18 17 15 21 21 C 1.53072 * 108.42341 * 67.53145 * 18 17 15 22 22 C 1.50190 * 109.83251 * 310.88606 * 21 18 17 23 23 O 1.21285 * 118.26139 * 197.79661 * 22 21 18 24 24 N 1.33357 * 123.49615 * 18.07117 * 22 21 18 25 25 H 1.08991 * 109.47081 * 300.00615 * 1 2 3 26 26 H 1.09003 * 109.46646 * 60.00814 * 1 2 3 27 27 H 1.08997 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47370 * 239.99152 * 2 1 3 29 29 H 1.09007 * 109.47003 * 119.99543 * 2 1 3 30 30 H 1.08994 * 109.47381 * 65.60643 * 3 2 1 31 31 H 1.09002 * 109.47117 * 305.60495 * 3 2 1 32 32 H 0.96996 * 119.99860 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.60024 * 308.69340 * 17 15 13 34 34 H 1.09004 * 109.60146 * 69.01386 * 17 15 13 35 35 H 1.08996 * 109.47472 * 59.99703 * 20 18 17 36 36 H 1.09001 * 109.47063 * 180.02562 * 20 18 17 37 37 H 1.09000 * 109.46777 * 300.00115 * 20 18 17 38 38 H 1.09000 * 109.40067 * 71.23042 * 21 18 17 39 39 H 1.09004 * 109.39862 * 191.05532 * 21 18 17 40 40 H 0.97000 * 117.94812 * 177.49361 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4989 1.4446 -0.1351 5 6 4.0726 1.3343 -1.3753 6 1 5.1365 1.4781 -1.4927 7 6 3.2854 1.0376 -2.4811 8 7 1.9865 0.8929 -2.3432 9 14 4.0732 0.8442 -4.1637 10 1 4.4599 -0.5748 -4.3692 11 1 3.1045 1.2503 -5.2135 12 1 5.2816 1.7035 -4.2462 13 6 4.2768 1.5550 0.9600 14 8 5.4809 1.6416 0.8422 15 6 3.6507 1.5707 2.3306 16 1 2.7554 0.9490 2.3249 17 6 3.2624 3.0049 2.6925 18 6 2.8369 3.0416 4.1653 19 1 2.0784 2.2803 4.3472 20 6 2.2721 4.4226 4.5039 21 6 4.0673 2.7606 5.0314 22 6 4.7812 1.5413 4.5223 23 8 5.5679 0.9864 5.2601 24 7 4.6002 1.0391 3.3002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7610 1.9265 0.9359 31 1 1.5971 1.9844 -0.8356 32 1 1.4369 0.6861 -3.1152 33 1 4.1174 3.6641 2.5423 34 1 2.4348 3.3299 2.0620 35 1 1.4073 4.6264 3.8726 36 1 1.9712 4.4452 5.5514 37 1 3.0360 5.1803 4.3293 38 1 4.7385 3.6188 4.9963 39 1 3.7536 2.5883 6.0610 40 1 5.1310 0.2695 3.0418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293941149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -70.715741 kcal Electronic energy + Delta-G solvation = -21854.232275 eV Core-core repulsion = 18669.036219 eV Total energy + Delta-G solvation = -3185.196055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35161 -38.55427 -36.39834 -35.54420 -33.67396 -32.16421 -31.57210 -29.60304 -27.84819 -25.98984 -24.98286 -23.53119 -21.36238 -20.69048 -19.47164 -18.94535 -17.07265 -16.83648 -16.50524 -15.86943 -15.11982 -14.63720 -14.29784 -14.05604 -13.83571 -13.74619 -13.39463 -13.25216 -12.85768 -12.59451 -12.15005 -12.11009 -11.75415 -11.55515 -11.49020 -11.16241 -11.08354 -10.75017 -10.74046 -10.66293 -10.42987 -10.37558 -10.18911 -9.87671 -9.59187 -9.01008 -8.88774 -8.27533 -7.82497 -6.28536 -3.93708 2.91957 3.07491 3.19498 3.24314 3.44592 3.80969 4.03206 4.55467 4.71010 4.71553 4.90017 4.96528 5.09904 5.41151 5.45962 5.52240 5.58494 5.66665 5.69975 5.88261 5.92704 5.95026 6.01734 6.05740 6.11865 6.25341 6.36604 6.37961 6.64306 6.84561 6.95893 7.08591 7.31703 7.51047 7.65643 7.70746 7.97498 8.40589 8.51937 9.06345 9.31291 9.81821 10.56603 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.006037 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.022534 B = 4637.037426 C = 5136.741189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.120 3.880 4 N -0.435 5.435 5 C -0.295 4.295 6 H 0.103 0.897 7 C 0.025 3.975 8 N -0.875 5.875 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.426 3.574 14 O -0.585 6.585 15 C 0.130 3.870 16 H 0.088 0.912 17 C -0.122 4.122 18 C -0.095 4.095 19 H 0.079 0.921 20 C -0.144 4.144 21 C -0.129 4.129 22 C 0.521 3.479 23 O -0.572 6.572 24 N -0.689 5.689 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.097 0.903 29 H 0.019 0.981 30 H 0.029 0.971 31 H 0.120 0.880 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 3.894 7.348 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C -0.003 4.003 4 N -0.153 5.153 5 C -0.423 4.423 6 H 0.121 0.879 7 C -0.176 4.176 8 N -0.517 5.517 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.213 3.787 14 O -0.470 6.470 15 C 0.021 3.979 16 H 0.105 0.895 17 C -0.160 4.160 18 C -0.114 4.114 19 H 0.098 0.902 20 C -0.202 4.202 21 C -0.169 4.169 22 C 0.308 3.692 23 O -0.452 6.452 24 N -0.340 5.340 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.956 3.823 7.548 10.348 hybrid contribution 0.279 -0.479 -1.092 1.225 sum -5.677 3.344 6.456 9.225 Atomic orbital electron populations 1.21555 0.97192 0.99744 1.00650 1.21891 0.94280 0.98020 1.01042 1.21938 0.80548 0.97718 1.00063 1.43838 1.05538 1.60659 1.05244 1.19821 0.95150 1.44615 0.82691 0.87889 1.25266 0.95568 0.96786 1.00027 1.70152 1.03738 1.47614 1.30169 0.85826 0.78735 0.78745 0.80839 1.20415 1.20870 1.19565 1.19929 0.87494 0.86089 0.85208 1.90556 1.14422 1.55927 1.86097 1.20878 0.91990 0.96315 0.88747 0.89481 1.21955 1.02895 0.95102 0.96026 1.21283 0.96769 0.98863 0.94493 0.90228 1.21799 1.01160 0.95761 1.01452 1.21722 0.97628 0.96653 1.00867 1.20078 0.82171 0.85626 0.81279 1.90720 1.38110 1.61128 1.55276 1.45231 1.41675 1.33830 1.13233 0.94766 0.92162 0.94519 0.88455 0.96264 0.95315 0.86203 0.92345 0.90433 0.89219 0.92054 0.92437 0.92372 0.88288 0.88477 0.76148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.11 -2.21 5.26 -26.73 -0.14 -2.35 16 3 C 0.12 2.43 4.29 -4.04 -0.02 2.41 16 4 N -0.44 -10.20 2.64 -114.81 -0.30 -10.51 16 5 C -0.29 -7.63 9.51 -14.94 -0.14 -7.78 16 6 H 0.10 2.86 7.19 -52.49 -0.38 2.49 16 7 C 0.02 0.59 5.19 -17.47 -0.09 0.50 16 8 N -0.87 -20.27 7.27 55.50 0.40 -19.87 16 9 Si 0.93 19.66 29.55 -169.99 -5.02 14.64 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.43 9.69 6.70 -10.99 -0.07 9.62 16 14 O -0.59 -15.60 16.18 5.54 0.09 -15.51 16 15 C 0.13 2.27 2.63 -69.53 -0.18 2.09 16 16 H 0.09 1.44 6.20 -51.93 -0.32 1.11 16 17 C -0.12 -1.76 4.41 -26.59 -0.12 -1.87 16 18 C -0.10 -1.09 2.79 -90.41 -0.25 -1.34 16 19 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 20 C -0.14 -1.31 9.20 37.16 0.34 -0.97 16 21 C -0.13 -1.64 5.36 -28.09 -0.15 -1.79 16 22 C 0.52 9.00 7.71 -11.86 -0.09 8.91 16 23 O -0.57 -11.82 17.78 5.55 0.10 -11.72 16 24 N -0.69 -12.35 4.80 -55.98 -0.27 -12.62 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.10 2.21 6.02 -51.93 -0.31 1.90 16 29 H 0.02 0.36 7.55 -51.93 -0.39 -0.04 16 30 H 0.03 0.50 4.89 -51.93 -0.25 0.24 16 31 H 0.12 2.66 5.92 -51.93 -0.31 2.35 16 32 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 33 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.09 1.22 6.75 -51.93 -0.35 0.87 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.40 7.66 8.58 -40.82 -0.35 7.31 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -29.32 315.25 -6.82 -36.14 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.02 Total: 9.05 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.55 Total: 5.64 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.17 Total: -42.99 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.19 Total: -27.23 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.32 -6.82 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293941149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.572 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds