Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 N 1.46511 * 109.47121 * 185.61272 * 3 2 1 5 5 C 1.37094 * 120.00101 * 82.75448 * 4 3 2 6 6 H 1.07997 * 119.99533 * 171.18554 * 5 4 3 7 7 C 1.38949 * 120.00188 * 351.18226 * 5 4 3 8 8 N 1.31414 * 119.99880 * 1.56056 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 181.56437 * 7 5 4 10 10 H 1.48501 * 109.47341 * 90.00006 * 9 7 5 11 11 H 1.48501 * 109.46938 * 209.99896 * 9 7 5 12 12 H 1.48502 * 109.47051 * 329.99743 * 9 7 5 13 13 C 1.34779 * 119.99381 * 262.75381 * 4 3 2 14 14 O 1.21295 * 119.99575 * 184.64319 * 13 4 3 15 15 C 1.50694 * 120.00293 * 4.64727 * 13 4 3 16 16 H 1.08999 * 109.30240 * 32.36901 * 15 13 4 17 17 C 1.52924 * 109.30118 * 272.99355 * 15 13 4 18 18 C 1.53339 * 108.67677 * 188.93543 * 17 15 13 19 19 H 1.09004 * 109.67535 * 307.79532 * 18 17 15 20 20 C 1.53000 * 109.67447 * 187.30068 * 18 17 15 21 21 C 1.53072 * 108.42341 * 67.53145 * 18 17 15 22 22 C 1.50190 * 109.83251 * 310.88606 * 21 18 17 23 23 O 1.21285 * 118.26139 * 197.79661 * 22 21 18 24 24 N 1.33357 * 123.49615 * 18.07117 * 22 21 18 25 25 H 1.08991 * 109.47081 * 300.00615 * 1 2 3 26 26 H 1.09003 * 109.46646 * 60.00814 * 1 2 3 27 27 H 1.08997 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47370 * 239.99152 * 2 1 3 29 29 H 1.09007 * 109.47003 * 119.99543 * 2 1 3 30 30 H 1.08994 * 109.47381 * 65.60643 * 3 2 1 31 31 H 1.09002 * 109.47117 * 305.60495 * 3 2 1 32 32 H 0.96996 * 119.99860 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.60024 * 308.69340 * 17 15 13 34 34 H 1.09004 * 109.60146 * 69.01386 * 17 15 13 35 35 H 1.08996 * 109.47472 * 59.99703 * 20 18 17 36 36 H 1.09001 * 109.47063 * 180.02562 * 20 18 17 37 37 H 1.09000 * 109.46777 * 300.00115 * 20 18 17 38 38 H 1.09000 * 109.40067 * 71.23042 * 21 18 17 39 39 H 1.09004 * 109.39862 * 191.05532 * 21 18 17 40 40 H 0.97000 * 117.94812 * 177.49361 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4989 1.4446 -0.1351 5 6 4.0726 1.3343 -1.3753 6 1 5.1365 1.4781 -1.4927 7 6 3.2854 1.0376 -2.4811 8 7 1.9865 0.8929 -2.3432 9 14 4.0732 0.8442 -4.1637 10 1 4.4599 -0.5748 -4.3692 11 1 3.1045 1.2503 -5.2135 12 1 5.2816 1.7035 -4.2462 13 6 4.2768 1.5550 0.9600 14 8 5.4809 1.6416 0.8422 15 6 3.6507 1.5707 2.3306 16 1 2.7554 0.9490 2.3249 17 6 3.2624 3.0049 2.6925 18 6 2.8369 3.0416 4.1653 19 1 2.0784 2.2803 4.3472 20 6 2.2721 4.4226 4.5039 21 6 4.0673 2.7606 5.0314 22 6 4.7812 1.5413 4.5223 23 8 5.5679 0.9864 5.2601 24 7 4.6002 1.0391 3.3002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7610 1.9265 0.9359 31 1 1.5971 1.9844 -0.8356 32 1 1.4369 0.6861 -3.1152 33 1 4.1174 3.6641 2.5423 34 1 2.4348 3.3299 2.0620 35 1 1.4073 4.6264 3.8726 36 1 1.9712 4.4452 5.5514 37 1 3.0360 5.1803 4.3293 38 1 4.7385 3.6188 4.9963 39 1 3.7536 2.5883 6.0610 40 1 5.1310 0.2695 3.0418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293941149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -89.801091 kcal Electronic energy + Delta-G solvation = -21855.059878 eV Core-core repulsion = 18669.036219 eV Total energy + Delta-G solvation = -3186.023658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76808 -40.21349 -37.76262 -37.26340 -34.94476 -33.88314 -33.28504 -30.98934 -28.77901 -27.63101 -26.51991 -25.01926 -22.49299 -22.23123 -21.04236 -20.18673 -18.90044 -18.25034 -18.17719 -17.25192 -16.59324 -16.16746 -15.69891 -15.67093 -15.37399 -15.27067 -14.80978 -14.54414 -14.25523 -13.83719 -13.44875 -13.36342 -13.13035 -12.95485 -12.79019 -12.70776 -12.41435 -12.25780 -12.15112 -12.02897 -11.88663 -11.78383 -11.62390 -11.48963 -11.01566 -10.64642 -10.55303 -9.95959 -9.64017 -8.14040 -5.87327 1.35312 1.43450 1.51777 1.57227 1.83704 2.22957 2.36432 2.99578 3.12202 3.58002 3.69738 3.74840 3.76053 4.06982 4.20686 4.42220 4.51201 4.64182 4.69113 4.70303 4.73967 4.81517 4.85914 4.97267 5.03184 5.17029 5.19498 5.33748 5.37093 5.44140 5.49620 5.55521 5.61161 5.75903 5.99797 6.11352 6.34573 6.56889 7.10624 7.19074 7.49429 8.00189 8.66736 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.006037 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.022534 B = 4637.037426 C = 5136.741189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.122 3.878 4 N -0.442 5.442 5 C -0.339 4.339 6 H 0.068 0.932 7 C 0.005 3.995 8 N -0.864 5.864 9 Si 0.983 3.017 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.414 3.586 14 O -0.638 6.638 15 C 0.142 3.858 16 H 0.105 0.895 17 C -0.119 4.119 18 C -0.083 4.083 19 H 0.095 0.905 20 C -0.140 4.140 21 C -0.123 4.123 22 C 0.516 3.484 23 O -0.611 6.611 24 N -0.695 5.695 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.271 0.729 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 4.688 8.384 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.000 4.000 4 N -0.159 5.159 5 C -0.467 4.467 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.808 3.192 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.202 3.798 14 O -0.526 6.526 15 C 0.034 3.966 16 H 0.123 0.877 17 C -0.157 4.157 18 C -0.102 4.102 19 H 0.113 0.887 20 C -0.197 4.197 21 C -0.162 4.162 22 C 0.305 3.695 23 O -0.495 6.495 24 N -0.344 5.344 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.766 4.629 8.580 13.111 hybrid contribution 1.142 -0.766 -1.473 2.015 sum -7.624 3.864 7.107 11.116 Atomic orbital electron populations 1.21465 0.94332 1.00862 1.01554 1.21759 0.96681 0.96895 0.99464 1.21988 0.78507 0.98412 1.01052 1.44037 1.06944 1.60125 1.04774 1.19613 0.94187 1.48117 0.84806 0.91378 1.25774 0.96169 0.95842 1.01926 1.70247 1.03682 1.45458 1.30933 0.85081 0.77924 0.78181 0.77984 1.20492 1.19125 1.20774 1.20854 0.87047 0.84860 0.87007 1.90512 1.16813 1.58080 1.87216 1.20848 0.91521 0.98887 0.85363 0.87730 1.22010 1.02695 0.92196 0.98844 1.21259 0.96374 1.01133 0.91430 0.88685 1.21778 1.01311 0.93708 1.02932 1.21811 0.97953 0.94289 1.02159 1.20977 0.81716 0.86338 0.80430 1.90696 1.39999 1.62578 1.56192 1.45404 1.41673 1.33549 1.13738 0.92024 0.93045 0.93346 0.92114 0.95790 0.91813 0.88031 0.91796 0.92121 0.87914 0.91123 0.90432 0.92450 0.87304 0.86026 0.77530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.11 -4.10 5.26 30.59 0.16 -3.94 16 3 C 0.12 4.81 4.29 86.37 0.37 5.18 16 4 N -0.44 -21.16 2.64 -635.54 -1.68 -22.84 16 5 C -0.34 -18.27 9.51 84.04 0.80 -17.47 16 6 H 0.07 4.06 7.19 -2.91 -0.02 4.04 16 7 C 0.01 0.25 5.19 84.93 0.44 0.69 16 8 N -0.86 -39.63 7.27 21.66 0.16 -39.48 16 9 Si 0.98 40.69 29.55 68.60 2.03 42.71 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 13 C 0.41 19.34 6.70 87.65 0.59 19.92 16 14 O -0.64 -35.84 16.18 -3.08 -0.05 -35.89 16 15 C 0.14 4.87 2.63 44.36 0.12 4.99 16 16 H 0.11 3.22 6.20 -2.39 -0.01 3.20 16 17 C -0.12 -3.19 4.41 30.68 0.14 -3.06 16 18 C -0.08 -1.59 2.79 -10.66 -0.03 -1.62 16 19 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 20 C -0.14 -1.92 9.20 71.98 0.66 -1.26 16 21 C -0.12 -2.78 5.36 29.71 0.16 -2.62 16 22 C 0.52 17.42 7.71 87.72 0.68 18.10 16 23 O -0.61 -25.32 17.78 -3.05 -0.05 -25.37 16 24 N -0.70 -24.98 4.80 -450.21 -2.16 -27.14 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.74 6.02 -2.39 -0.01 2.72 16 29 H 0.02 0.85 7.55 -2.38 -0.02 0.84 16 30 H 0.06 2.03 4.89 -2.39 -0.01 2.02 16 31 H 0.10 4.41 5.92 -2.39 -0.01 4.39 16 32 H 0.27 11.78 8.31 -92.71 -0.77 11.01 16 33 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.10 2.48 6.75 -2.38 -0.02 2.46 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.39 15.44 8.58 -92.71 -0.80 14.65 16 Total: -1.00 -67.20 315.25 3.29 -63.91 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.25 Total: 28.11 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 4.79 Total: 15.97 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -3.68 Total: -89.45 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -0.10 Total: -61.26 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -67.20 3.29 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293941149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.889 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds