Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00138 * 2 1 4 4 N 1.46497 * 109.47140 * 124.99476 * 3 2 1 5 5 C 1.46496 * 120.00352 * 270.00111 * 4 3 2 6 6 C 1.50704 * 109.47056 * 270.00510 * 5 4 3 7 7 H 1.07998 * 120.00154 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99692 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00450 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99776 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46995 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47261 * 119.99729 * 10 8 6 13 13 H 1.48498 * 109.46859 * 239.99722 * 10 8 6 14 14 C 1.34776 * 119.99801 * 90.00533 * 4 3 2 15 15 O 1.21282 * 119.99940 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99978 * 359.97438 * 14 4 3 17 17 N 1.46906 * 109.47109 * 180.02562 * 16 14 4 18 18 C 1.47013 * 110.99679 * 293.63802 * 17 16 14 19 19 C 1.53102 * 109.25585 * 177.61181 * 18 17 16 20 20 O 1.43011 * 109.26258 * 56.84351 * 19 18 17 21 21 C 1.43017 * 113.73722 * 301.33198 * 20 19 18 22 22 C 1.47013 * 110.99743 * 169.99988 * 17 16 14 23 23 H 1.08001 * 120.00043 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00284 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00284 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46713 * 4.99786 * 3 2 1 27 27 H 1.09002 * 109.46988 * 245.00042 * 3 2 1 28 28 H 1.09002 * 109.47248 * 30.00186 * 5 4 3 29 29 H 1.09000 * 109.47481 * 150.00438 * 5 4 3 30 30 H 0.96994 * 120.00664 * 180.02562 * 9 8 6 31 31 H 1.08992 * 109.46894 * 60.00096 * 16 14 4 32 32 H 1.09004 * 109.47113 * 300.00247 * 16 14 4 33 33 H 1.09000 * 109.50252 * 297.53423 * 18 17 16 34 34 H 1.08997 * 109.51401 * 57.66777 * 18 17 16 35 35 H 1.09007 * 109.50232 * 296.90658 * 19 18 17 36 36 H 1.09004 * 109.54160 * 176.80211 * 19 18 17 37 37 H 1.08998 * 109.50896 * 298.73695 * 21 20 19 38 38 H 1.08997 * 109.54338 * 178.62778 * 21 20 19 39 39 H 1.09001 * 109.50643 * 302.31994 * 22 17 16 40 40 H 1.08994 * 109.50970 * 62.41449 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3038 3.8370 1.6367 8 6 2.5191 4.0667 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8734 5.8995 3.6776 11 1 3.5022 6.3304 2.4031 12 1 1.6034 6.6420 3.8793 13 1 3.7970 6.1829 4.8054 14 6 4.2496 0.8663 0.9825 15 8 5.0195 0.8880 1.9193 16 6 4.6969 0.3175 -0.3479 17 7 6.0951 -0.1228 -0.2509 18 6 6.9932 1.0202 -0.0316 19 6 8.4291 0.5117 0.1227 20 8 8.7887 -0.2450 -1.0363 21 6 7.9350 -1.3663 -1.2794 22 6 6.4941 -0.8769 -1.4481 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4886 1.6967 2.5459 29 1 3.0988 1.3605 3.2260 30 1 1.7308 3.9745 5.4296 31 1 4.6120 1.0938 -1.1082 32 1 4.0677 -0.5296 -0.6216 33 1 6.9365 1.6965 -0.8845 34 1 6.6951 1.5491 0.8736 35 1 8.4976 -0.1221 1.0070 36 1 9.1065 1.3590 0.2289 37 1 7.9891 -2.0547 -0.4361 38 1 8.2544 -1.8776 -2.1876 39 1 5.8317 -1.7329 -1.5767 40 1 6.4286 -0.2311 -2.3237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293979598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -44.056422 kcal Electronic energy + Delta-G solvation = -21158.995175 eV Core-core repulsion = 17974.955155 eV Total energy + Delta-G solvation = -3184.040020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83527 -38.64635 -35.87125 -35.15857 -33.19173 -32.08360 -31.10451 -29.43134 -27.43894 -25.56160 -24.74150 -23.95245 -22.39000 -20.38662 -19.98047 -18.41118 -16.73870 -16.46354 -16.36570 -15.98008 -15.45755 -15.27319 -14.99781 -14.62886 -14.41409 -14.12292 -13.91422 -13.38775 -13.07358 -12.56498 -12.36204 -12.10176 -11.83288 -11.67855 -11.38665 -11.30379 -11.21740 -10.95621 -10.87154 -10.62823 -10.51102 -10.19596 -9.74641 -9.63195 -9.21930 -8.87897 -8.44851 -8.21495 -7.68613 -6.05354 -4.10284 2.42084 3.28290 3.35244 3.37829 3.42736 3.58453 3.87829 4.20026 4.43873 4.85772 4.97484 5.04063 5.11189 5.15224 5.27946 5.29742 5.33269 5.38844 5.43184 5.54187 5.56033 5.65064 5.68325 5.77129 5.98480 6.02838 6.13598 6.16903 6.76480 6.83930 6.91554 7.00179 7.12698 7.17923 7.45356 7.54784 7.91266 8.22428 8.40369 8.89604 9.10098 9.54985 11.02709 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.005695 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.459632 B = 4915.158232 C = 6205.821760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.507 3.493 15 O -0.523 6.523 16 C 0.037 3.963 17 N -0.518 5.518 18 C 0.013 3.987 19 C 0.067 3.933 20 O -0.391 6.391 21 C 0.066 3.934 22 C 0.017 3.983 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -8.398 -13.786 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.327 5.327 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.293 3.707 15 O -0.399 6.399 16 C -0.095 4.095 17 N -0.244 5.244 18 C -0.115 4.115 19 C -0.010 4.010 20 O -0.310 6.310 21 C -0.011 4.011 22 C -0.111 4.111 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.721 -8.595 -12.783 16.111 hybrid contribution -0.435 1.455 -0.463 1.588 sum 4.286 -7.140 -13.246 15.646 Atomic orbital electron populations 1.23818 0.95842 1.01774 1.00513 1.23427 0.96422 0.99005 0.99962 1.20579 0.93189 0.95392 0.89652 1.48233 1.10439 1.60414 1.13602 1.19266 0.95375 0.93696 0.78750 1.21459 1.40472 0.93345 1.01189 0.92519 1.24929 0.95074 0.98701 0.95344 1.69938 1.42078 1.36066 1.05172 0.86464 0.77926 0.85038 0.78109 1.19860 1.20971 1.20857 1.20119 0.82452 0.78693 0.89433 1.90633 1.52257 1.55468 1.41531 1.22090 0.90347 1.00388 0.96626 1.61852 1.01407 1.24462 1.36646 1.22983 0.93072 0.92224 1.03227 1.22673 0.94602 0.95661 0.88075 1.87937 1.53970 1.42035 1.47036 1.22607 0.88399 0.88615 1.01511 1.22808 0.97922 0.98807 0.91567 0.88771 0.88279 0.87802 0.89423 0.91059 0.95015 0.93843 0.92766 0.92454 0.88496 0.94718 0.86977 0.91964 0.88530 0.92247 0.88729 0.89773 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.02 0.42 -1.88 16 2 C -0.17 -2.34 9.74 -36.02 -0.35 -2.69 16 3 C 0.14 2.16 5.65 -5.19 -0.03 2.13 16 4 N -0.59 -12.37 2.44 -176.43 -0.43 -12.80 16 5 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.51 10.39 7.38 -10.98 -0.08 10.31 16 15 O -0.52 -12.90 13.93 5.56 0.08 -12.82 16 16 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 17 N -0.52 -7.86 4.46 -235.74 -1.05 -8.92 16 18 C 0.01 0.20 5.29 -3.71 -0.02 0.18 16 19 C 0.07 0.91 7.01 37.21 0.26 1.17 16 20 O -0.39 -5.32 10.83 -35.23 -0.38 -5.70 16 21 C 0.07 0.73 7.01 37.21 0.26 0.99 16 22 C 0.02 0.20 5.65 -3.71 -0.02 0.18 16 23 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 24 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 25 H 0.10 1.35 7.83 -52.49 -0.41 0.94 16 26 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 27 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 32 H 0.10 1.24 7.67 -51.93 -0.40 0.85 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 2.11 5.88 -51.93 -0.31 1.80 16 35 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -32.85 329.22 -7.51 -40.36 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.37 Total: 0.03 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.03 Total: 3.93 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.75 Total: -47.47 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.30 Total: -18.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.85 -7.51 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293979598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.692 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds