Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00138 * 2 1 4 4 N 1.46497 * 109.47140 * 124.99476 * 3 2 1 5 5 C 1.46496 * 120.00352 * 270.00111 * 4 3 2 6 6 C 1.50704 * 109.47056 * 270.00510 * 5 4 3 7 7 H 1.07998 * 120.00154 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99692 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00450 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99776 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46995 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47261 * 119.99729 * 10 8 6 13 13 H 1.48498 * 109.46859 * 239.99722 * 10 8 6 14 14 C 1.34776 * 119.99801 * 90.00533 * 4 3 2 15 15 O 1.21282 * 119.99940 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99978 * 359.97438 * 14 4 3 17 17 N 1.46906 * 109.47109 * 180.02562 * 16 14 4 18 18 C 1.47013 * 110.99679 * 293.63802 * 17 16 14 19 19 C 1.53102 * 109.25585 * 177.61181 * 18 17 16 20 20 O 1.43011 * 109.26258 * 56.84351 * 19 18 17 21 21 C 1.43017 * 113.73722 * 301.33198 * 20 19 18 22 22 C 1.47013 * 110.99743 * 169.99988 * 17 16 14 23 23 H 1.08001 * 120.00043 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00284 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00284 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46713 * 4.99786 * 3 2 1 27 27 H 1.09002 * 109.46988 * 245.00042 * 3 2 1 28 28 H 1.09002 * 109.47248 * 30.00186 * 5 4 3 29 29 H 1.09000 * 109.47481 * 150.00438 * 5 4 3 30 30 H 0.96994 * 120.00664 * 180.02562 * 9 8 6 31 31 H 1.08992 * 109.46894 * 60.00096 * 16 14 4 32 32 H 1.09004 * 109.47113 * 300.00247 * 16 14 4 33 33 H 1.09000 * 109.50252 * 297.53423 * 18 17 16 34 34 H 1.08997 * 109.51401 * 57.66777 * 18 17 16 35 35 H 1.09007 * 109.50232 * 296.90658 * 19 18 17 36 36 H 1.09004 * 109.54160 * 176.80211 * 19 18 17 37 37 H 1.08998 * 109.50896 * 298.73695 * 21 20 19 38 38 H 1.08997 * 109.54338 * 178.62778 * 21 20 19 39 39 H 1.09001 * 109.50643 * 302.31994 * 22 17 16 40 40 H 1.08994 * 109.50970 * 62.41449 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3038 3.8370 1.6367 8 6 2.5191 4.0667 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8734 5.8995 3.6776 11 1 3.5022 6.3304 2.4031 12 1 1.6034 6.6420 3.8793 13 1 3.7970 6.1829 4.8054 14 6 4.2496 0.8663 0.9825 15 8 5.0195 0.8880 1.9193 16 6 4.6969 0.3175 -0.3479 17 7 6.0951 -0.1228 -0.2509 18 6 6.9932 1.0202 -0.0316 19 6 8.4291 0.5117 0.1227 20 8 8.7887 -0.2450 -1.0363 21 6 7.9350 -1.3663 -1.2794 22 6 6.4941 -0.8769 -1.4481 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4886 1.6967 2.5459 29 1 3.0988 1.3605 3.2260 30 1 1.7308 3.9745 5.4296 31 1 4.6120 1.0938 -1.1082 32 1 4.0677 -0.5296 -0.6216 33 1 6.9365 1.6965 -0.8845 34 1 6.6951 1.5491 0.8736 35 1 8.4976 -0.1221 1.0070 36 1 9.1065 1.3590 0.2289 37 1 7.9891 -2.0547 -0.4361 38 1 8.2544 -1.8776 -2.1876 39 1 5.8317 -1.7329 -1.5767 40 1 6.4286 -0.2311 -2.3237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293979598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -67.743343 kcal Electronic energy + Delta-G solvation = -21160.022317 eV Core-core repulsion = 17974.955155 eV Total energy + Delta-G solvation = -3185.067162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15442 -39.96032 -37.29827 -36.41027 -35.09677 -33.65692 -32.10726 -30.88605 -29.12114 -26.90871 -26.23788 -24.97909 -24.20026 -21.45389 -21.14995 -19.90999 -18.64487 -18.01403 -17.65022 -17.07572 -16.98504 -16.54932 -16.20558 -15.97716 -15.86686 -15.43222 -15.18014 -14.69175 -14.39234 -14.24999 -13.94382 -13.38629 -13.26009 -13.03062 -12.93237 -12.83659 -12.60967 -12.40468 -12.29089 -12.24024 -12.10443 -11.66381 -11.52996 -10.86925 -10.65783 -10.40411 -10.30980 -9.45106 -9.35537 -8.22720 -6.37575 1.32902 1.35601 1.37786 1.49289 1.84287 2.25960 2.40131 2.83316 2.99322 3.06968 3.65227 3.95246 3.97148 4.04146 4.13662 4.19547 4.22915 4.30001 4.35866 4.43835 4.49852 4.63827 4.75491 4.83774 4.85446 4.88364 5.00698 5.02912 5.06736 5.23270 5.52683 5.71840 5.74447 5.80483 5.95907 5.99419 6.06404 6.16902 6.70442 6.79860 7.28684 7.51367 8.84563 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.005695 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.459632 B = 4915.158232 C = 6205.821760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.600 5.600 5 C 0.266 3.734 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.497 3.503 15 O -0.576 6.576 16 C 0.052 3.948 17 N -0.539 5.539 18 C 0.017 3.983 19 C 0.073 3.927 20 O -0.400 6.400 21 C 0.060 3.940 22 C 0.019 3.981 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.019 0.981 29 H -0.005 1.005 30 H 0.267 0.733 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -8.721 -16.400 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.145 3.855 6 C -0.578 4.578 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.286 3.714 15 O -0.456 6.456 16 C -0.079 4.079 17 N -0.265 5.265 18 C -0.112 4.112 19 C -0.004 4.004 20 O -0.319 6.319 21 C -0.017 4.017 22 C -0.108 4.108 23 H 0.135 0.865 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.037 0.963 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.605 -8.939 -15.455 18.438 hybrid contribution -0.447 1.486 0.347 1.589 sum 4.158 -7.453 -15.108 17.352 Atomic orbital electron populations 1.24046 0.95605 1.02827 0.98349 1.23335 0.96777 0.98282 1.01834 1.20821 0.92736 0.96396 0.88963 1.48218 1.11764 1.60094 1.13077 1.18657 0.93713 0.92640 0.80509 1.21715 1.40425 0.94419 1.01288 0.92931 1.25841 0.94685 1.03658 0.94868 1.70057 1.42911 1.38040 1.05807 0.85385 0.78207 0.79157 0.78154 1.19122 1.19439 1.20801 1.21156 0.81538 0.77695 0.91056 1.90609 1.53616 1.57485 1.43879 1.22004 0.90991 1.01838 0.93029 1.61808 1.01150 1.24416 1.39163 1.22821 0.94271 0.92606 1.01467 1.22589 0.93836 0.96048 0.87958 1.87927 1.54686 1.42715 1.46553 1.22871 0.88057 0.87875 1.02885 1.22933 0.98550 0.99216 0.90119 0.86525 0.88464 0.86544 0.90621 0.87766 0.96255 0.98655 0.92436 0.90426 0.85332 0.94166 0.90965 0.93104 0.87178 0.92671 0.85494 0.87278 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 14.32 67.79 0.97 -2.99 16 2 C -0.18 -4.72 9.74 25.65 0.25 -4.47 16 3 C 0.13 4.07 5.65 85.64 0.48 4.55 16 4 N -0.60 -25.34 2.44 -830.49 -2.03 -27.36 16 5 C 0.27 14.47 5.16 85.64 0.44 14.92 16 6 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.49 5.46 84.66 0.46 0.95 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 10 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.50 20.63 7.38 87.66 0.65 21.27 16 15 O -0.58 -29.86 13.93 -3.04 -0.04 -29.90 16 16 C 0.05 1.47 4.00 85.56 0.34 1.81 16 17 N -0.54 -15.56 4.46 -899.76 -4.01 -19.58 16 18 C 0.02 0.51 5.29 86.32 0.46 0.97 16 19 C 0.07 1.97 7.01 72.02 0.50 2.47 16 20 O -0.40 -10.14 10.83 -148.98 -1.61 -11.76 16 21 C 0.06 1.16 7.01 72.02 0.50 1.67 16 22 C 0.02 0.38 5.65 86.32 0.49 0.87 16 23 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 24 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 25 H 0.12 2.71 7.83 -2.91 -0.02 2.69 16 26 H 0.08 2.48 7.72 -2.39 -0.02 2.46 16 27 H 0.10 2.46 6.44 -2.39 -0.02 2.45 16 28 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 29 H 0.00 -0.30 7.42 -2.39 -0.02 -0.31 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.08 1.92 7.38 -2.39 -0.02 1.90 16 32 H 0.13 2.83 7.67 -2.38 -0.02 2.81 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 2.85 5.88 -2.39 -0.01 2.84 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.11 1.64 8.09 -2.39 -0.02 1.62 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -74.77 329.22 1.41 -73.36 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.00 Total: 13.31 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.79 Total: 11.09 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.75 Total: -103.17 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.66 Total: -41.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.77 1.41 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293979598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.616 kcal (2) G-P(sol) polarization free energy of solvation -74.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds