Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 N 1.46499 * 109.46732 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00208 * 263.83017 * 4 3 2 6 6 H 1.07994 * 120.00114 * 140.73338 * 5 4 3 7 7 C 1.38951 * 119.99753 * 320.73446 * 5 4 3 8 8 N 1.31415 * 120.00360 * 341.78044 * 7 5 4 9 9 Si 1.86802 * 119.99682 * 161.78349 * 7 5 4 10 10 H 1.48501 * 109.47076 * 90.00283 * 9 7 5 11 11 H 1.48506 * 109.46717 * 209.99567 * 9 7 5 12 12 H 1.48490 * 109.47419 * 329.99453 * 9 7 5 13 13 C 1.34773 * 120.00084 * 83.83500 * 4 3 2 14 14 O 1.21293 * 119.99692 * 3.45035 * 13 4 3 15 15 C 1.50694 * 120.00267 * 183.72366 * 13 4 3 16 16 H 1.09001 * 109.40192 * 26.02926 * 15 13 4 17 17 C 1.53070 * 109.40123 * 266.20529 * 15 13 4 18 18 C 1.53348 * 108.42469 * 190.96953 * 17 15 13 19 19 C 1.52918 * 108.67397 * 67.52956 * 18 17 15 20 20 N 1.45751 * 110.49118 * 309.24743 * 19 18 17 21 21 C 1.46497 * 117.95009 * 199.07570 * 20 19 18 22 22 C 1.33237 * 124.06740 * 19.15006 * 20 19 18 23 23 O 1.21284 * 118.15520 * 177.70576 * 22 20 19 24 24 H 1.09010 * 109.46793 * 59.99658 * 1 2 3 25 25 H 1.09003 * 109.47599 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47524 * 300.00396 * 1 2 3 27 27 H 1.09000 * 109.47023 * 239.99746 * 2 1 3 28 28 H 1.08994 * 109.46766 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.46643 * 60.00165 * 3 2 1 30 30 H 1.09000 * 109.47044 * 300.00061 * 3 2 1 31 31 H 0.96995 * 120.00075 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.67448 * 310.70038 * 17 15 13 33 33 H 1.08997 * 109.67456 * 71.23895 * 17 15 13 34 34 H 1.08999 * 109.60692 * 187.28749 * 18 17 15 35 35 H 1.08997 * 109.60414 * 307.77309 * 18 17 15 36 36 H 1.09005 * 109.30024 * 69.56409 * 19 18 17 37 37 H 1.09000 * 109.30109 * 189.14219 * 19 18 17 38 38 H 1.08999 * 109.47217 * 89.99511 * 21 20 19 39 39 H 1.08995 * 109.47231 * 210.00122 * 21 20 19 40 40 H 1.09004 * 109.46901 * 330.00259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5701 1.1813 6 1 5.0870 0.9929 1.3503 7 6 3.7302 2.4423 2.1604 8 7 2.8777 3.3919 1.8468 9 14 4.3241 2.2649 3.9226 10 1 5.5468 3.0848 4.1178 11 1 3.2629 2.7298 4.8517 12 1 4.6344 0.8394 4.1993 13 6 4.1794 1.3168 -1.1595 14 8 3.5749 1.2669 -2.2099 15 6 5.6839 1.2323 -1.1512 16 1 6.0188 0.8323 -0.1941 17 6 6.2729 2.6308 -1.3517 18 6 7.7770 2.4901 -1.6150 19 6 7.9753 1.8070 -2.9686 20 7 7.1800 0.5881 -3.0464 21 6 7.5475 -0.4085 -4.0553 22 6 6.1388 0.3247 -2.2578 23 8 5.5262 -0.7054 -2.4437 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5564 4.0004 2.5303 32 1 5.7945 3.1116 -2.2049 33 1 6.1118 3.2289 -0.4548 34 1 8.2392 3.4771 -1.6323 35 1 8.2307 1.8850 -0.8300 36 1 7.6705 2.4875 -3.7637 37 1 9.0283 1.5550 -3.0942 38 1 8.2665 -1.1084 -3.6297 39 1 6.6565 -0.9505 -4.3720 40 1 7.9930 0.0922 -4.9150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294628526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = -74.176615 kcal Electronic energy + Delta-G solvation = -21901.853408 eV Core-core repulsion = 18716.507278 eV Total energy + Delta-G solvation = -3185.346130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31495 -38.19997 -36.05575 -35.05137 -33.61043 -32.68723 -31.22411 -29.48465 -26.81918 -25.96625 -24.93273 -23.71451 -21.86899 -20.79734 -19.22961 -18.31497 -17.23793 -16.32940 -16.07417 -15.65587 -15.13357 -14.61459 -14.23594 -14.01593 -13.88070 -13.43142 -13.17028 -13.03841 -12.87412 -12.36340 -12.32218 -11.99121 -11.72286 -11.38621 -11.33931 -11.24138 -11.00951 -10.96309 -10.90850 -10.62943 -10.55652 -10.32188 -10.13809 -9.68248 -9.11772 -9.04641 -8.43328 -8.36092 -7.44955 -6.37820 -4.10617 3.08634 3.14308 3.19615 3.23982 3.31886 3.92264 4.10379 4.69988 4.88357 4.95098 5.06462 5.14729 5.23334 5.47138 5.59809 5.60811 5.78357 5.86074 5.86991 5.88989 6.00320 6.02282 6.11350 6.12985 6.33530 6.48528 6.56318 6.61676 6.64519 6.73987 6.76341 6.91322 7.17475 7.37101 7.49022 7.78650 7.98184 8.36344 8.67279 9.07147 9.52487 9.97120 10.64247 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.007487 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.707201 B = 3739.080282 C = 4794.877687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.123 3.877 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.086 0.914 7 C 0.047 3.953 8 N -0.859 5.859 9 Si 0.911 3.089 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.497 3.503 14 O -0.592 6.592 15 C -0.106 4.106 16 H 0.121 0.879 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.116 3.884 20 N -0.615 5.615 21 C 0.081 3.919 22 C 0.535 3.465 23 O -0.539 6.539 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.656 -0.632 -3.569 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.155 5.155 5 C -0.470 4.470 6 H 0.104 0.896 7 C -0.159 4.159 8 N -0.495 5.495 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.284 3.716 14 O -0.476 6.476 15 C -0.130 4.130 16 H 0.139 0.861 17 C -0.143 4.143 18 C -0.172 4.172 19 C -0.007 4.007 20 N -0.350 5.350 21 C -0.062 4.062 22 C 0.323 3.677 23 O -0.415 6.415 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.877 -1.022 -4.051 8.917 hybrid contribution 0.404 0.054 1.029 1.106 sum 8.282 -0.968 -3.022 8.869 Atomic orbital electron populations 1.21650 0.96610 1.00415 1.01284 1.21864 0.94667 0.99501 1.01538 1.21337 0.81260 0.94326 1.03109 1.43325 1.04668 1.62737 1.04743 1.19338 1.11416 1.23304 0.92912 0.89599 1.25355 0.96838 0.93555 1.00198 1.69934 1.31314 1.14197 1.34081 0.86201 0.78556 0.78955 0.82591 1.20204 1.20693 1.19321 1.19611 0.87272 0.80549 0.84184 1.90549 1.69782 1.55712 1.31571 1.21165 0.97038 0.96344 0.98460 0.86150 1.21471 0.93556 0.95390 1.03865 1.21900 0.97671 1.01259 0.96342 1.21390 0.94833 0.85910 0.98531 1.47156 1.31590 1.20297 1.35913 1.21594 1.01445 0.92171 0.90968 1.19825 0.78637 0.86860 0.82339 1.90659 1.53449 1.27273 1.70085 0.93176 0.93642 0.93060 0.92645 0.92398 0.88124 0.93048 0.92035 0.91301 0.89081 0.89774 0.90905 0.92018 0.91175 0.93185 0.90287 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 37.16 0.37 -2.18 16 2 C -0.14 -3.01 6.21 -26.73 -0.17 -3.18 16 3 C 0.12 3.05 4.89 -4.04 -0.02 3.03 16 4 N -0.44 -11.26 2.52 -114.82 -0.29 -11.55 16 5 C -0.34 -8.54 8.61 -14.93 -0.13 -8.67 16 6 H 0.09 2.05 6.36 -52.49 -0.33 1.72 16 7 C 0.05 1.15 4.96 -17.47 -0.09 1.06 16 8 N -0.86 -22.20 11.48 55.50 0.64 -21.56 16 9 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.50 12.74 6.22 -10.99 -0.07 12.67 16 14 O -0.59 -16.88 15.78 -7.15 -0.11 -16.99 16 15 C -0.11 -2.24 2.21 -93.14 -0.21 -2.44 16 16 H 0.12 2.48 6.12 -51.93 -0.32 2.17 16 17 C -0.10 -1.82 5.32 -26.51 -0.14 -1.96 16 18 C -0.13 -1.67 6.02 -26.59 -0.16 -1.83 16 19 C 0.12 1.41 6.32 -4.49 -0.03 1.38 16 20 N -0.61 -9.93 3.21 -182.89 -0.59 -10.52 16 21 C 0.08 1.09 10.24 59.85 0.61 1.71 16 22 C 0.54 11.20 6.65 -11.92 -0.08 11.12 16 23 O -0.54 -13.31 15.28 -7.14 -0.11 -13.42 16 24 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.10 2.58 5.62 -51.93 -0.29 2.29 16 30 H 0.05 1.33 7.57 -51.93 -0.39 0.94 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.24 7.13 -51.93 -0.37 0.87 16 40 H 0.06 0.65 8.01 -51.93 -0.42 0.24 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -32.39 323.46 -7.04 -39.43 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.33 Total: 5.12 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.10 Total: 10.71 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.24 Total: -43.63 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.22 Total: -30.41 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.39 -7.04 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294628526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.746 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds