Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 N 1.46499 * 109.46732 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00208 * 263.83017 * 4 3 2 6 6 H 1.07994 * 120.00114 * 140.73338 * 5 4 3 7 7 C 1.38951 * 119.99753 * 320.73446 * 5 4 3 8 8 N 1.31415 * 120.00360 * 341.78044 * 7 5 4 9 9 Si 1.86802 * 119.99682 * 161.78349 * 7 5 4 10 10 H 1.48501 * 109.47076 * 90.00283 * 9 7 5 11 11 H 1.48506 * 109.46717 * 209.99567 * 9 7 5 12 12 H 1.48490 * 109.47419 * 329.99453 * 9 7 5 13 13 C 1.34773 * 120.00084 * 83.83500 * 4 3 2 14 14 O 1.21293 * 119.99692 * 3.45035 * 13 4 3 15 15 C 1.50694 * 120.00267 * 183.72366 * 13 4 3 16 16 H 1.09001 * 109.40192 * 26.02926 * 15 13 4 17 17 C 1.53070 * 109.40123 * 266.20529 * 15 13 4 18 18 C 1.53348 * 108.42469 * 190.96953 * 17 15 13 19 19 C 1.52918 * 108.67397 * 67.52956 * 18 17 15 20 20 N 1.45751 * 110.49118 * 309.24743 * 19 18 17 21 21 C 1.46497 * 117.95009 * 199.07570 * 20 19 18 22 22 C 1.33237 * 124.06740 * 19.15006 * 20 19 18 23 23 O 1.21284 * 118.15520 * 177.70576 * 22 20 19 24 24 H 1.09010 * 109.46793 * 59.99658 * 1 2 3 25 25 H 1.09003 * 109.47599 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47524 * 300.00396 * 1 2 3 27 27 H 1.09000 * 109.47023 * 239.99746 * 2 1 3 28 28 H 1.08994 * 109.46766 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.46643 * 60.00165 * 3 2 1 30 30 H 1.09000 * 109.47044 * 300.00061 * 3 2 1 31 31 H 0.96995 * 120.00075 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.67448 * 310.70038 * 17 15 13 33 33 H 1.08997 * 109.67456 * 71.23895 * 17 15 13 34 34 H 1.08999 * 109.60692 * 187.28749 * 18 17 15 35 35 H 1.08997 * 109.60414 * 307.77309 * 18 17 15 36 36 H 1.09005 * 109.30024 * 69.56409 * 19 18 17 37 37 H 1.09000 * 109.30109 * 189.14219 * 19 18 17 38 38 H 1.08999 * 109.47217 * 89.99511 * 21 20 19 39 39 H 1.08995 * 109.47231 * 210.00122 * 21 20 19 40 40 H 1.09004 * 109.46901 * 330.00259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5701 1.1813 6 1 5.0870 0.9929 1.3503 7 6 3.7302 2.4423 2.1604 8 7 2.8777 3.3919 1.8468 9 14 4.3241 2.2649 3.9226 10 1 5.5468 3.0848 4.1178 11 1 3.2629 2.7298 4.8517 12 1 4.6344 0.8394 4.1993 13 6 4.1794 1.3168 -1.1595 14 8 3.5749 1.2669 -2.2099 15 6 5.6839 1.2323 -1.1512 16 1 6.0188 0.8323 -0.1941 17 6 6.2729 2.6308 -1.3517 18 6 7.7770 2.4901 -1.6150 19 6 7.9753 1.8070 -2.9686 20 7 7.1800 0.5881 -3.0464 21 6 7.5475 -0.4085 -4.0553 22 6 6.1388 0.3247 -2.2578 23 8 5.5262 -0.7054 -2.4437 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5564 4.0004 2.5303 32 1 5.7945 3.1116 -2.2049 33 1 6.1118 3.2289 -0.4548 34 1 8.2392 3.4771 -1.6323 35 1 8.2307 1.8850 -0.8300 36 1 7.6705 2.4875 -3.7637 37 1 9.0283 1.5550 -3.0942 38 1 8.2665 -1.1084 -3.6297 39 1 6.6565 -0.9505 -4.3720 40 1 7.9930 0.0922 -4.9150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294628526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = -94.619740 kcal Electronic energy + Delta-G solvation = -21902.739889 eV Core-core repulsion = 18716.507278 eV Total energy + Delta-G solvation = -3186.232610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88160 -40.05438 -37.49207 -37.01530 -35.13478 -34.42129 -33.12215 -30.88160 -28.03186 -27.72110 -26.71375 -25.24458 -23.17111 -22.56924 -21.16198 -19.76279 -18.97741 -18.06867 -17.53945 -17.28823 -16.56697 -16.40495 -15.97675 -15.66998 -15.45272 -15.05517 -14.76233 -14.50129 -14.27800 -14.01308 -13.53101 -13.43344 -13.25026 -13.13824 -12.96917 -12.85297 -12.63852 -12.42573 -12.30882 -12.19726 -12.06329 -12.02356 -11.76153 -11.56431 -11.00225 -10.68024 -10.36116 -9.68711 -9.45982 -8.29617 -6.10231 1.43141 1.49869 1.55752 1.61973 1.86918 2.15692 2.35042 2.95297 3.06468 3.60635 3.84840 3.89341 3.96551 4.12008 4.25965 4.33328 4.36032 4.46857 4.53218 4.57872 4.65500 4.71403 4.76985 4.86238 4.91693 4.93034 5.04482 5.07850 5.13989 5.16487 5.30509 5.32579 5.43689 5.50738 5.53494 6.01930 6.39373 6.41455 7.10113 7.16593 7.53844 8.00183 8.74087 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.007487 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.707201 B = 3739.080282 C = 4794.877687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.124 3.876 4 N -0.447 5.447 5 C -0.360 4.360 6 H 0.094 0.906 7 C 0.011 3.989 8 N -0.890 5.890 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.478 3.522 14 O -0.634 6.634 15 C -0.104 4.104 16 H 0.120 0.880 17 C -0.099 4.099 18 C -0.124 4.124 19 C 0.107 3.893 20 N -0.607 5.607 21 C 0.077 3.923 22 C 0.526 3.474 23 O -0.592 6.592 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.274 0.726 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.159 -0.213 -2.801 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.000 4.000 4 N -0.164 5.164 5 C -0.487 4.487 6 H 0.112 0.888 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.805 3.195 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.267 3.733 14 O -0.522 6.522 15 C -0.127 4.127 16 H 0.138 0.862 17 C -0.137 4.137 18 C -0.161 4.161 19 C -0.014 4.014 20 N -0.339 5.339 21 C -0.065 4.065 22 C 0.314 3.686 23 O -0.473 6.473 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.436 -0.571 -3.293 10.958 hybrid contribution -0.377 -0.020 0.738 0.829 sum 10.058 -0.591 -2.555 10.395 Atomic orbital electron populations 1.21599 0.93192 1.02400 1.01913 1.21755 0.97647 0.97107 1.00093 1.21314 0.81508 0.95796 1.01370 1.43625 1.05099 1.62284 1.05346 1.19649 1.12084 1.24053 0.92907 0.88839 1.26192 0.96610 0.92625 1.03848 1.70035 1.32282 1.14839 1.35529 0.85116 0.78295 0.79061 0.77043 1.18890 1.20656 1.18934 1.20462 0.89458 0.79842 0.83520 1.90494 1.71184 1.57648 1.32866 1.21121 0.93794 0.98872 0.98946 0.86217 1.21451 0.97210 0.92481 1.02562 1.21923 0.93482 1.03713 0.96988 1.21804 0.96622 0.84382 0.98601 1.47298 1.30109 1.21879 1.34628 1.21807 1.00634 0.92336 0.91741 1.19821 0.79691 0.86082 0.82975 1.90625 1.55641 1.29292 1.71770 0.93049 0.90963 0.91922 0.95233 0.92479 0.88874 0.95411 0.91670 0.92950 0.90345 0.86064 0.89984 0.90684 0.86539 0.91235 0.93450 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.91 71.98 0.71 -4.04 16 2 C -0.13 -5.80 6.21 30.59 0.19 -5.61 16 3 C 0.12 6.43 4.89 86.38 0.42 6.85 16 4 N -0.45 -24.02 2.52 -635.55 -1.60 -25.63 16 5 C -0.36 -18.30 8.61 84.04 0.72 -17.58 16 6 H 0.09 4.51 6.36 -2.91 -0.02 4.50 16 7 C 0.01 0.54 4.96 84.93 0.42 0.96 16 8 N -0.89 -46.53 11.48 21.66 0.25 -46.28 16 9 Si 0.98 38.20 29.59 68.60 2.03 40.23 16 10 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 11 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 13 C 0.48 25.79 6.22 87.66 0.55 26.34 16 14 O -0.63 -38.44 15.78 9.07 0.14 -38.30 16 15 C -0.10 -4.47 2.21 -12.43 -0.03 -4.50 16 16 H 0.12 5.06 6.12 -2.39 -0.01 5.05 16 17 C -0.10 -3.40 5.32 30.73 0.16 -3.24 16 18 C -0.12 -2.67 6.02 30.68 0.18 -2.49 16 19 C 0.11 2.15 6.32 86.49 0.55 2.70 16 20 N -0.61 -18.54 3.21 -851.80 -2.73 -21.27 16 21 C 0.08 1.91 10.24 127.77 1.31 3.22 16 22 C 0.53 22.38 6.65 87.73 0.58 22.96 16 23 O -0.59 -30.62 15.28 9.10 0.14 -30.48 16 24 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 4.95 5.62 -2.39 -0.01 4.94 16 30 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 31 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.05 1.94 8.09 -2.39 -0.02 1.93 16 33 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.12 1.41 8.10 -2.39 -0.02 1.40 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.50 7.13 -2.39 -0.02 1.48 16 40 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 Total: -1.00 -75.54 323.46 5.02 -70.53 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.02 Total: 25.63 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 5.77 Total: 25.57 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -4.09 Total: -93.18 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: 0.28 Total: -68.78 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -75.54 5.02 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294628526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.094 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds