Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 N 1.46494 * 109.47397 * 184.26713 * 3 2 1 5 5 C 1.37096 * 120.00132 * 87.14423 * 4 3 2 6 6 H 1.08007 * 120.00112 * 314.69538 * 5 4 3 7 7 C 1.38948 * 120.00233 * 134.69454 * 5 4 3 8 8 N 1.31414 * 120.00226 * 159.42641 * 7 5 4 9 9 Si 1.86800 * 119.99878 * 339.41713 * 7 5 4 10 10 H 1.48503 * 109.47155 * 95.13779 * 9 7 5 11 11 H 1.48498 * 109.47024 * 215.13512 * 9 7 5 12 12 H 1.48492 * 109.47192 * 335.13475 * 9 7 5 13 13 C 1.34781 * 120.00199 * 267.14089 * 4 3 2 14 14 O 1.21290 * 120.00269 * 185.11238 * 13 4 3 15 15 C 1.50698 * 119.99770 * 5.11909 * 13 4 3 16 16 H 1.08993 * 110.32922 * 31.12516 * 15 13 4 17 17 C 1.54913 * 110.36352 * 268.89183 * 15 13 4 18 18 C 1.55156 * 101.57928 * 204.15248 * 17 15 13 19 19 C 1.54322 * 102.94401 * 35.50194 * 18 17 15 20 20 N 1.47022 * 107.27182 * 337.80769 * 19 18 17 21 21 C 1.34769 * 125.64825 * 178.99004 * 20 19 18 22 22 C 1.50697 * 120.00451 * 359.94461 * 21 20 19 23 23 O 1.21280 * 119.99855 * 179.97438 * 21 20 19 24 24 H 1.09010 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47088 * 299.99149 * 1 2 3 26 26 H 1.08999 * 109.47975 * 59.99698 * 1 2 3 27 27 H 1.09010 * 109.47011 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47642 * 120.00989 * 2 1 3 29 29 H 1.09005 * 109.46698 * 64.26598 * 3 2 1 30 30 H 1.09003 * 109.47190 * 304.27116 * 3 2 1 31 31 H 0.97002 * 120.00280 * 179.97438 * 8 7 5 32 32 H 1.09001 * 111.00037 * 322.22349 * 17 15 13 33 33 H 1.08994 * 111.00810 * 86.08139 * 17 15 13 34 34 H 1.09002 * 110.71942 * 153.86144 * 18 17 15 35 35 H 1.09001 * 110.72231 * 276.95870 * 18 17 15 36 36 H 1.09002 * 109.88637 * 97.22483 * 19 18 17 37 37 H 1.08997 * 109.88353 * 218.38508 * 19 18 17 38 38 H 1.08997 * 109.47168 * 60.00018 * 22 21 20 39 39 H 1.08999 * 109.47448 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46886 * 299.99832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5013 1.4438 -0.1028 5 6 4.1019 1.4147 -1.3348 6 1 3.7488 0.7298 -2.0917 7 6 5.1648 2.2663 -1.6099 8 7 5.9921 1.9884 -2.5924 9 14 5.4175 3.8063 -0.5834 10 1 6.3906 3.5235 0.5021 11 1 5.9411 4.8958 -1.4460 12 1 4.1218 4.2240 0.0097 13 6 4.2554 1.4737 1.0139 14 8 5.4616 1.5684 0.9289 15 6 3.5999 1.3893 2.3682 16 1 2.6907 0.7908 2.3122 17 6 3.2794 2.8080 2.9014 18 6 3.2367 2.5630 4.4328 19 6 4.3333 1.4977 4.6431 20 7 4.5335 0.8172 3.3554 21 6 5.4224 -0.1674 3.1171 22 6 6.3191 -0.6574 4.2248 23 8 5.5011 -0.6587 2.0111 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.7403 1.9337 0.9258 30 1 1.6155 1.9779 -0.8493 31 1 6.7339 2.5832 -2.7847 32 1 4.0701 3.5114 2.6401 33 1 2.3134 3.1544 2.5341 34 1 3.4774 3.4766 4.9764 35 1 2.2615 2.1814 4.7354 36 1 5.2606 1.9771 4.9571 37 1 4.0120 0.7786 5.3965 38 1 5.7095 -1.0449 5.0411 39 1 6.9652 -1.4492 3.8458 40 1 6.9314 0.1678 4.5885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299146361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = -53.411105 kcal Electronic energy + Delta-G solvation = -22482.301764 eV Core-core repulsion = 19297.856094 eV Total energy + Delta-G solvation = -3184.445670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16496 -38.12167 -36.77039 -35.15064 -32.68070 -31.79750 -31.31010 -29.75798 -28.57994 -25.94341 -24.62183 -23.03755 -21.56321 -20.86462 -20.07148 -18.32612 -17.45991 -16.54843 -16.14683 -15.25657 -15.00298 -14.79210 -14.30619 -14.12554 -13.72535 -13.42916 -13.31980 -13.02437 -12.76866 -12.34308 -12.25429 -12.22999 -12.06953 -11.80784 -11.63323 -11.53239 -11.27055 -11.18716 -10.93951 -10.76687 -10.58822 -10.15151 -10.06019 -9.83943 -9.24348 -8.57426 -8.40615 -8.02084 -7.37136 -6.03972 -3.79983 3.12613 3.26310 3.43624 3.49661 3.70567 3.97740 4.48112 4.61699 4.64739 4.75228 4.90704 5.14046 5.31735 5.33956 5.37883 5.40716 5.43807 5.47086 5.53752 5.58979 5.70594 5.74269 5.78697 5.92411 5.95210 5.97295 6.02762 6.17876 6.23992 6.29559 6.34659 6.59029 6.64456 6.86160 7.91880 8.01773 8.19408 8.72481 8.95583 9.13175 9.60016 10.01810 11.02543 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.009954 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.575030 B = 2812.203241 C = 3443.097919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.105 3.895 4 N -0.468 5.468 5 C -0.343 4.343 6 H 0.089 0.911 7 C 0.093 3.907 8 N -0.869 5.869 9 Si 0.907 3.093 10 H -0.260 1.260 11 H -0.309 1.309 12 H -0.281 1.281 13 C 0.465 3.535 14 O -0.519 6.519 15 C 0.117 3.883 16 H 0.086 0.914 17 C -0.127 4.127 18 C -0.129 4.129 19 C 0.105 3.895 20 N -0.610 5.610 21 C 0.519 3.481 22 C -0.163 4.163 23 O -0.502 6.502 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.269 0.731 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 0.440 16.726 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C -0.019 4.019 4 N -0.192 5.192 5 C -0.469 4.469 6 H 0.107 0.893 7 C -0.115 4.115 8 N -0.504 5.504 9 Si 0.738 3.262 10 H -0.186 1.186 11 H -0.238 1.238 12 H -0.206 1.206 13 C 0.252 3.748 14 O -0.398 6.398 15 C 0.010 3.990 16 H 0.104 0.896 17 C -0.166 4.166 18 C -0.167 4.167 19 C -0.018 4.018 20 N -0.348 5.348 21 C 0.307 3.693 22 C -0.222 4.222 23 O -0.374 6.374 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.175 0.150 15.918 17.896 hybrid contribution 0.111 0.791 0.495 0.940 sum -8.065 0.941 16.413 18.312 Atomic orbital electron populations 1.21715 0.96215 1.01101 1.01383 1.21935 0.94716 0.98530 1.02700 1.21636 0.83729 0.95651 1.00891 1.43501 1.03250 1.67076 1.05330 1.18670 1.16745 1.21980 0.89508 0.89309 1.25288 0.94075 0.97655 0.94448 1.69786 1.13129 1.36384 1.31139 0.86429 0.78821 0.80384 0.80583 1.18616 1.23823 1.20630 1.20076 0.87996 0.81676 0.85032 1.90529 1.13993 1.49799 1.85486 1.21921 0.92601 0.94469 0.90049 0.89600 1.22795 1.03048 0.95795 0.94934 1.22621 0.98850 0.98803 0.96403 1.21949 0.98996 0.94773 0.86099 1.48278 1.38647 1.37362 1.10547 1.20331 0.79978 0.79041 0.89964 1.21844 0.99638 1.02956 0.97808 1.90858 1.66780 1.55784 1.24007 0.93166 0.93218 0.92676 0.91113 0.92643 0.92915 0.90725 0.92154 0.90287 0.89440 0.89946 0.90354 0.91629 0.91480 0.90157 0.89265 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.52 16 2 C -0.14 -2.41 6.13 -26.74 -0.16 -2.58 16 3 C 0.11 2.03 4.96 -4.05 -0.02 2.01 16 4 N -0.47 -11.92 2.10 -114.81 -0.24 -12.16 16 5 C -0.34 -10.31 9.66 -14.93 -0.14 -10.45 16 6 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 7 C 0.09 2.92 4.81 -17.47 -0.08 2.84 16 8 N -0.87 -28.23 13.96 55.50 0.77 -27.46 16 9 Si 0.91 25.21 25.02 -169.99 -4.25 20.96 16 10 H -0.26 -7.65 6.37 56.52 0.36 -7.29 16 11 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 C 0.46 11.79 4.11 -10.98 -0.05 11.75 16 14 O -0.52 -15.56 10.28 -16.72 -0.17 -15.73 16 15 C 0.12 2.21 2.58 -67.57 -0.17 2.04 16 16 H 0.09 1.49 5.87 -51.93 -0.30 1.19 16 17 C -0.13 -1.91 6.26 -24.58 -0.15 -2.06 16 18 C -0.13 -1.33 6.95 -24.90 -0.17 -1.51 16 19 C 0.11 1.23 6.49 -3.06 -0.02 1.21 16 20 N -0.61 -10.71 3.12 -164.36 -0.51 -11.22 16 21 C 0.52 10.19 7.26 -10.99 -0.08 10.11 16 22 C -0.16 -2.16 9.51 36.00 0.34 -1.82 16 23 O -0.50 -12.97 14.88 -16.72 -0.25 -13.22 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 28 H 0.05 0.98 7.16 -51.93 -0.37 0.61 16 29 H 0.05 0.85 5.59 -51.93 -0.29 0.56 16 30 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 31 H 0.27 8.22 8.31 -40.82 -0.34 7.88 16 32 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 33 H 0.09 1.13 7.28 -51.93 -0.38 0.75 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.19 8.12 -51.93 -0.42 0.77 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -40.02 316.50 -6.66 -46.68 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.43 Total: -2.64 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.35 Total: 10.02 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.02 Total: -50.83 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.42 Total: -28.95 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.25 Total: 20.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -40.02 -6.66 -46.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299146361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.729 kcal (2) G-P(sol) polarization free energy of solvation -40.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds