Wall clock time and date at job start Mon Mar 30 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 N 1.46494 * 109.47397 * 184.26713 * 3 2 1 5 5 C 1.37096 * 120.00132 * 87.14423 * 4 3 2 6 6 H 1.08007 * 120.00112 * 314.69538 * 5 4 3 7 7 C 1.38948 * 120.00233 * 134.69454 * 5 4 3 8 8 N 1.31414 * 120.00226 * 159.42641 * 7 5 4 9 9 Si 1.86800 * 119.99878 * 339.41713 * 7 5 4 10 10 H 1.48503 * 109.47155 * 95.13779 * 9 7 5 11 11 H 1.48498 * 109.47024 * 215.13512 * 9 7 5 12 12 H 1.48492 * 109.47192 * 335.13475 * 9 7 5 13 13 C 1.34781 * 120.00199 * 267.14089 * 4 3 2 14 14 O 1.21290 * 120.00269 * 185.11238 * 13 4 3 15 15 C 1.50698 * 119.99770 * 5.11909 * 13 4 3 16 16 H 1.08993 * 110.32922 * 31.12516 * 15 13 4 17 17 C 1.54913 * 110.36352 * 268.89183 * 15 13 4 18 18 C 1.55156 * 101.57928 * 204.15248 * 17 15 13 19 19 C 1.54322 * 102.94401 * 35.50194 * 18 17 15 20 20 N 1.47022 * 107.27182 * 337.80769 * 19 18 17 21 21 C 1.34769 * 125.64825 * 178.99004 * 20 19 18 22 22 C 1.50697 * 120.00451 * 359.94461 * 21 20 19 23 23 O 1.21280 * 119.99855 * 179.97438 * 21 20 19 24 24 H 1.09010 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47088 * 299.99149 * 1 2 3 26 26 H 1.08999 * 109.47975 * 59.99698 * 1 2 3 27 27 H 1.09010 * 109.47011 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47642 * 120.00989 * 2 1 3 29 29 H 1.09005 * 109.46698 * 64.26598 * 3 2 1 30 30 H 1.09003 * 109.47190 * 304.27116 * 3 2 1 31 31 H 0.97002 * 120.00280 * 179.97438 * 8 7 5 32 32 H 1.09001 * 111.00037 * 322.22349 * 17 15 13 33 33 H 1.08994 * 111.00810 * 86.08139 * 17 15 13 34 34 H 1.09002 * 110.71942 * 153.86144 * 18 17 15 35 35 H 1.09001 * 110.72231 * 276.95870 * 18 17 15 36 36 H 1.09002 * 109.88637 * 97.22483 * 19 18 17 37 37 H 1.08997 * 109.88353 * 218.38508 * 19 18 17 38 38 H 1.08997 * 109.47168 * 60.00018 * 22 21 20 39 39 H 1.08999 * 109.47448 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46886 * 299.99832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5013 1.4438 -0.1028 5 6 4.1019 1.4147 -1.3348 6 1 3.7488 0.7298 -2.0917 7 6 5.1648 2.2663 -1.6099 8 7 5.9921 1.9884 -2.5924 9 14 5.4175 3.8063 -0.5834 10 1 6.3906 3.5235 0.5021 11 1 5.9411 4.8958 -1.4460 12 1 4.1218 4.2240 0.0097 13 6 4.2554 1.4737 1.0139 14 8 5.4616 1.5684 0.9289 15 6 3.5999 1.3893 2.3682 16 1 2.6907 0.7908 2.3122 17 6 3.2794 2.8080 2.9014 18 6 3.2367 2.5630 4.4328 19 6 4.3333 1.4977 4.6431 20 7 4.5335 0.8172 3.3554 21 6 5.4224 -0.1674 3.1171 22 6 6.3191 -0.6574 4.2248 23 8 5.5011 -0.6587 2.0111 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.7403 1.9337 0.9258 30 1 1.6155 1.9779 -0.8493 31 1 6.7339 2.5832 -2.7847 32 1 4.0701 3.5114 2.6401 33 1 2.3134 3.1544 2.5341 34 1 3.4774 3.4766 4.9764 35 1 2.2615 2.1814 4.7354 36 1 5.2606 1.9771 4.9571 37 1 4.0120 0.7786 5.3965 38 1 5.7095 -1.0449 5.0411 39 1 6.9652 -1.4492 3.8458 40 1 6.9314 0.1678 4.5885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299146361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:07 Heat of formation + Delta-G solvation = -83.270488 kcal Electronic energy + Delta-G solvation = -22483.596564 eV Core-core repulsion = 19297.856094 eV Total energy + Delta-G solvation = -3185.740470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69876 -39.86932 -38.16327 -36.97718 -34.72167 -33.28933 -32.96710 -30.98758 -29.79398 -27.62180 -26.31044 -24.47342 -22.84555 -22.12197 -21.77305 -20.03943 -19.14280 -17.95874 -17.89651 -17.17461 -16.51026 -16.30222 -15.78108 -15.60146 -15.43881 -15.17528 -14.63145 -14.50696 -14.30345 -13.99733 -13.80948 -13.37574 -13.31725 -13.28746 -12.97692 -12.83786 -12.75787 -12.71731 -12.27720 -12.18590 -12.12666 -11.95901 -11.68322 -11.51639 -10.85615 -10.72789 -10.36580 -9.60808 -9.43627 -8.42334 -6.18504 1.14999 1.28636 1.42892 1.70827 1.90509 2.20345 2.43811 2.71175 3.11407 3.48273 3.63574 3.87066 3.92316 4.01228 4.12862 4.20640 4.28131 4.44458 4.47931 4.50780 4.60076 4.63489 4.76880 4.77825 4.86075 4.87444 4.98697 5.03770 5.09798 5.20858 5.26373 5.29094 5.37551 5.49268 5.72434 5.87112 6.60538 6.80932 6.96302 7.33623 7.37572 7.96635 8.67711 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.009954 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.575030 B = 2812.203241 C = 3443.097919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.100 3.900 4 N -0.486 5.486 5 C -0.342 4.342 6 H 0.052 0.948 7 C 0.037 3.963 8 N -0.919 5.919 9 Si 0.970 3.030 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.248 1.248 13 C 0.456 3.544 14 O -0.574 6.574 15 C 0.115 3.885 16 H 0.105 0.895 17 C -0.129 4.129 18 C -0.111 4.111 19 C 0.093 3.907 20 N -0.614 5.614 21 C 0.501 3.499 22 C -0.150 4.150 23 O -0.586 6.586 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.269 0.731 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 1.857 21.367 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C -0.023 4.023 4 N -0.210 5.210 5 C -0.469 4.469 6 H 0.070 0.930 7 C -0.166 4.166 8 N -0.557 5.557 9 Si 0.799 3.201 10 H -0.217 1.217 11 H -0.231 1.231 12 H -0.171 1.171 13 C 0.246 3.754 14 O -0.456 6.456 15 C 0.007 3.993 16 H 0.123 0.877 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.028 4.028 20 N -0.350 5.350 21 C 0.292 3.708 22 C -0.209 4.209 23 O -0.465 6.465 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.208 1.603 20.622 23.526 hybrid contribution 1.002 0.222 -0.912 1.373 sum -10.205 1.825 19.711 22.271 Atomic orbital electron populations 1.21649 0.92047 1.02525 1.03106 1.21844 0.98181 0.96665 1.00515 1.21936 0.79841 0.97366 1.03123 1.43769 1.05934 1.67332 1.03922 1.18570 1.16843 1.20614 0.90870 0.93010 1.26095 0.94054 1.00746 0.95671 1.69900 1.14361 1.37909 1.33580 0.85407 0.79352 0.77173 0.78187 1.21691 1.23066 1.17126 1.21288 0.87637 0.79136 0.87331 1.90481 1.16699 1.51692 1.86727 1.22012 0.92743 0.97914 0.86621 0.87740 1.22891 1.03228 0.92011 0.98639 1.22696 1.00040 0.99625 0.92522 1.22439 1.00446 0.95997 0.83931 1.48568 1.37512 1.36559 1.12375 1.21529 0.80317 0.78708 0.90270 1.21832 0.99110 1.03282 0.96630 1.90820 1.69354 1.58778 1.27538 0.91986 0.90207 0.92191 0.95056 0.93230 0.88605 0.90573 0.92170 0.93211 0.86780 0.87181 0.87047 0.90726 0.87455 0.85754 0.90186 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.91 71.98 0.71 -2.36 16 2 C -0.13 -4.52 6.13 30.59 0.19 -4.33 16 3 C 0.10 3.72 4.96 86.38 0.43 4.15 16 4 N -0.49 -25.20 2.10 -635.54 -1.33 -26.53 16 5 C -0.34 -21.64 9.66 84.04 0.81 -20.83 16 6 H 0.05 3.55 8.06 -2.91 -0.02 3.53 16 7 C 0.04 2.43 4.81 84.93 0.41 2.84 16 8 N -0.92 -63.31 13.96 21.66 0.30 -63.00 16 9 Si 0.97 54.11 25.02 68.60 1.72 55.83 16 10 H -0.29 -17.42 6.37 99.48 0.63 -16.78 16 11 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 12 H -0.25 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.46 23.36 4.11 87.66 0.36 23.72 16 14 O -0.57 -35.64 10.28 18.24 0.19 -35.45 16 15 C 0.11 4.06 2.58 44.72 0.12 4.18 16 16 H 0.11 3.29 5.87 -2.39 -0.01 3.27 16 17 C -0.13 -3.30 6.26 31.99 0.20 -3.10 16 18 C -0.11 -1.57 6.95 31.78 0.22 -1.35 16 19 C 0.09 1.67 6.49 86.73 0.56 2.23 16 20 N -0.61 -20.01 3.12 -792.29 -2.47 -22.48 16 21 C 0.50 19.45 7.26 87.66 0.64 20.09 16 22 C -0.15 -3.63 9.51 71.23 0.68 -2.95 16 23 O -0.59 -31.73 14.88 18.27 0.27 -31.45 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.05 1.71 7.16 -2.39 -0.02 1.69 16 29 H 0.10 2.73 5.59 -2.38 -0.01 2.72 16 30 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 31 H 0.27 17.45 8.31 -92.71 -0.77 16.68 16 32 H 0.05 1.58 8.05 -2.39 -0.02 1.56 16 33 H 0.11 2.28 7.28 -2.39 -0.02 2.26 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -99.47 316.50 4.94 -94.53 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.94 Total: 6.28 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 5.32 Total: 22.27 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.50 Total: -112.01 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: 0.46 Total: -66.91 kcal Atomic # 14 Polarization: 54.11 SS G_CDS: 1.72 Total: 55.83 kcal Total: -99.47 4.94 -94.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299146361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.262 kcal (2) G-P(sol) polarization free energy of solvation -99.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds