Wall clock time and date at job start Mon Mar 30 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 C 1.50696 * 109.47395 * 120.00164 * 2 1 3 5 5 O 1.21279 * 120.00140 * 262.21140 * 4 2 1 6 6 N 1.34780 * 119.99981 * 82.20106 * 4 2 1 7 7 C 1.46929 * 120.62992 * 3.50203 * 6 4 2 8 8 C 1.53187 * 108.77988 * 126.38469 * 7 6 4 9 9 C 1.53040 * 109.31213 * 54.63404 * 8 7 6 10 10 C 1.53047 * 109.53588 * 298.63481 * 9 8 7 11 11 C 1.46923 * 120.63501 * 183.48967 * 6 4 2 12 12 H 1.08995 * 109.58813 * 113.82200 * 11 6 4 13 13 C 1.50702 * 109.58176 * 353.40431 * 11 6 4 14 14 O 1.21291 * 120.00068 * 294.50296 * 13 11 6 15 15 N 1.34782 * 120.00215 * 114.50797 * 13 11 6 16 16 C 1.37096 * 119.99921 * 179.97438 * 15 13 11 17 17 H 1.07996 * 120.00521 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99418 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00400 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47015 * 60.00167 * 20 18 16 22 22 H 1.48493 * 109.47043 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47190 * 300.00271 * 20 18 16 24 24 H 1.08999 * 109.47234 * 180.69964 * 1 2 3 25 25 H 1.08997 * 109.47244 * 300.70637 * 1 2 3 26 26 H 1.09001 * 109.46882 * 60.70617 * 1 2 3 27 27 H 1.08998 * 109.47403 * 240.00578 * 2 1 3 28 28 H 1.09006 * 109.47325 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47696 * 300.00271 * 3 2 1 30 30 H 1.08997 * 109.47008 * 60.00281 * 3 2 1 31 31 H 1.09005 * 109.58612 * 6.59307 * 7 6 4 32 32 H 1.09000 * 109.58336 * 246.17854 * 7 6 4 33 33 H 1.09001 * 109.49858 * 294.68432 * 8 7 6 34 34 H 1.08999 * 109.52511 * 174.59579 * 8 7 6 35 35 H 1.09001 * 109.46242 * 178.61278 * 9 8 7 36 36 H 1.09000 * 109.45206 * 58.64568 * 9 8 7 37 37 H 1.08993 * 109.49515 * 301.41060 * 10 9 8 38 38 H 1.09002 * 109.52120 * 181.33383 * 10 9 8 39 39 H 0.96999 * 119.99454 * 359.97438 * 15 13 11 40 40 H 0.96998 * 119.99943 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3687 -0.0714 2.2047 6 7 2.1077 -2.0560 1.2481 7 6 1.7766 -2.8401 0.0504 8 6 2.9498 -3.7718 -0.2689 9 6 3.2758 -4.6164 0.9650 10 6 3.6876 -3.6991 2.1188 11 6 2.5227 -2.7667 2.4652 12 1 1.6874 -3.3523 2.8491 13 6 2.9652 -1.7704 3.5057 14 8 3.9526 -1.0923 3.3149 15 7 2.2639 -1.6329 4.6485 16 6 2.6668 -0.7269 5.5953 17 1 3.5459 -0.1231 5.4253 18 6 1.9434 -0.5849 6.7731 19 7 0.8734 -1.3193 6.9797 20 14 2.4919 0.6500 8.0629 21 1 2.4910 2.0136 7.4746 22 1 1.5587 0.6077 9.2172 23 1 3.8626 0.3101 8.5224 24 1 -0.3634 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8835 26 1 -0.3633 0.5028 -0.8963 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6043 -2.1680 -0.7903 32 1 0.8804 -3.4317 0.2373 33 1 3.8216 -3.1780 -0.5440 34 1 2.6798 -4.4270 -1.0971 35 1 4.0944 -5.2977 0.7328 36 1 2.3960 -5.1911 1.2543 37 1 4.5523 -3.1061 1.8213 38 1 3.9425 -4.3021 2.9904 39 1 1.4741 -2.1750 4.8009 40 1 0.3687 -1.2203 7.8021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299641356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:37 Heat of formation + Delta-G solvation = -73.681695 kcal Electronic energy + Delta-G solvation = -22075.769672 eV Core-core repulsion = 18890.445004 eV Total energy + Delta-G solvation = -3185.324669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32960 -37.61554 -36.87747 -34.25591 -33.56977 -32.45835 -31.20504 -30.61307 -27.03692 -26.00481 -24.63810 -23.52557 -22.59719 -20.25539 -19.54171 -18.24734 -17.56764 -16.92031 -15.64147 -15.48280 -15.04966 -14.48840 -14.23529 -14.01661 -13.82102 -13.65668 -13.58260 -13.01443 -12.95302 -12.35873 -12.22527 -12.12138 -11.89486 -11.69959 -11.37033 -11.23270 -11.05724 -10.97018 -10.91225 -10.77777 -10.64555 -10.44595 -10.29596 -10.00028 -9.37656 -8.62701 -8.26679 -8.00100 -7.67412 -6.20211 -3.57338 3.15287 3.23071 3.36230 3.37009 3.43060 4.32701 4.34088 4.66144 4.78590 4.92260 4.94161 5.03694 5.14946 5.19055 5.28760 5.41566 5.46204 5.57306 5.63506 5.69930 5.74546 5.82675 5.84637 5.93470 5.99167 6.03582 6.05683 6.08732 6.20847 6.28471 6.46853 6.50193 6.60193 6.92889 7.76243 7.84713 8.28712 8.76530 8.91662 9.43717 9.78879 10.35732 10.98753 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.006755 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.610030 B = 4144.281276 C = 4986.099152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.496 3.504 5 O -0.467 6.467 6 N -0.607 5.607 7 C 0.109 3.891 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.133 3.867 12 H 0.072 0.928 13 C 0.474 3.526 14 O -0.574 6.574 15 N -0.565 5.565 16 C -0.277 4.277 17 H 0.099 0.901 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 0.927 3.073 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.387 0.613 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -5.365 -16.507 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.282 3.718 5 O -0.336 6.336 6 N -0.344 5.344 7 C -0.015 4.015 8 C -0.174 4.174 9 C -0.155 4.155 10 C -0.157 4.157 11 C 0.026 3.974 12 H 0.090 0.910 13 C 0.260 3.740 14 O -0.457 6.457 15 N -0.202 5.202 16 C -0.407 4.407 17 H 0.117 0.883 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.755 3.245 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.220 0.780 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.297 -4.496 -15.902 16.576 hybrid contribution -0.364 0.091 0.679 0.776 sum -1.661 -4.404 -15.223 15.934 Atomic orbital electron populations 1.21728 0.93025 1.02297 1.02715 1.21294 0.97443 0.97823 0.96723 1.21624 1.01492 0.93886 1.02075 1.20709 0.78917 0.81930 0.90203 1.90981 1.43975 1.64204 1.34480 1.47976 1.68986 1.05538 1.11926 1.21732 0.97298 0.94577 0.87843 1.21930 0.98992 0.98382 0.98078 1.21520 1.01347 0.97588 0.95034 1.21756 0.98327 0.97149 0.98479 1.21148 0.96896 0.93598 0.85719 0.91005 1.19086 0.86402 0.85533 0.83023 1.90494 1.29360 1.47467 1.78409 1.41699 1.26124 1.36568 1.15798 1.19585 1.10934 1.14921 0.95236 0.88308 1.25174 0.96069 0.98623 0.98549 1.69606 1.17603 1.40976 1.27230 0.85973 0.78127 0.80783 0.79618 1.20134 1.21181 1.20148 0.92351 0.91762 0.91824 0.89647 0.92358 0.92515 0.91358 0.89726 0.91666 0.91450 0.91058 0.91733 0.91851 0.90500 0.90836 0.78026 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.11 37.15 0.34 -1.31 16 2 C -0.11 -1.54 2.42 -91.78 -0.22 -1.76 16 3 C -0.13 -1.88 8.69 37.16 0.32 -1.56 16 4 C 0.50 9.51 6.70 -10.99 -0.07 9.44 16 5 O -0.47 -11.80 11.59 -19.27 -0.22 -12.03 16 6 N -0.61 -10.19 2.97 -166.54 -0.50 -10.69 16 7 C 0.11 1.23 5.89 -3.71 -0.02 1.21 16 8 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 9 C -0.12 -1.35 5.88 -26.69 -0.16 -1.50 16 10 C -0.12 -1.90 5.29 -26.61 -0.14 -2.04 16 11 C 0.13 2.54 3.31 -68.76 -0.23 2.31 16 12 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 13 C 0.47 12.11 4.34 -10.98 -0.05 12.07 16 14 O -0.57 -16.86 14.09 -19.28 -0.27 -17.13 16 15 N -0.56 -15.59 5.29 -10.96 -0.06 -15.65 16 16 C -0.28 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 3.16 7.16 -52.49 -0.38 2.79 16 18 C 0.02 0.45 5.50 -17.47 -0.10 0.35 16 19 N -0.91 -26.40 13.05 55.50 0.72 -25.68 16 20 Si 0.93 22.66 29.55 -169.99 -5.02 17.64 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.95 6.25 -51.93 -0.32 0.62 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 31 H 0.08 0.79 5.40 -51.93 -0.28 0.51 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.39 10.32 7.75 -40.82 -0.32 10.01 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -36.17 318.47 -7.47 -43.64 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.29 Total: 7.94 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.63 Total: 7.15 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.17 Total: -52.01 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.50 Total: -29.15 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.17 -7.47 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299641356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.043 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds