Wall clock time and date at job start Mon Mar 30 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 C 1.50696 * 109.47395 * 120.00164 * 2 1 3 5 5 O 1.21279 * 120.00140 * 262.21140 * 4 2 1 6 6 N 1.34780 * 119.99981 * 82.20106 * 4 2 1 7 7 C 1.46929 * 120.62992 * 3.50203 * 6 4 2 8 8 C 1.53187 * 108.77988 * 126.38469 * 7 6 4 9 9 C 1.53040 * 109.31213 * 54.63404 * 8 7 6 10 10 C 1.53047 * 109.53588 * 298.63481 * 9 8 7 11 11 C 1.46923 * 120.63501 * 183.48967 * 6 4 2 12 12 H 1.08995 * 109.58813 * 113.82200 * 11 6 4 13 13 C 1.50702 * 109.58176 * 353.40431 * 11 6 4 14 14 O 1.21291 * 120.00068 * 294.50296 * 13 11 6 15 15 N 1.34782 * 120.00215 * 114.50797 * 13 11 6 16 16 C 1.37096 * 119.99921 * 179.97438 * 15 13 11 17 17 H 1.07996 * 120.00521 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99418 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00400 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47015 * 60.00167 * 20 18 16 22 22 H 1.48493 * 109.47043 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47190 * 300.00271 * 20 18 16 24 24 H 1.08999 * 109.47234 * 180.69964 * 1 2 3 25 25 H 1.08997 * 109.47244 * 300.70637 * 1 2 3 26 26 H 1.09001 * 109.46882 * 60.70617 * 1 2 3 27 27 H 1.08998 * 109.47403 * 240.00578 * 2 1 3 28 28 H 1.09006 * 109.47325 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47696 * 300.00271 * 3 2 1 30 30 H 1.08997 * 109.47008 * 60.00281 * 3 2 1 31 31 H 1.09005 * 109.58612 * 6.59307 * 7 6 4 32 32 H 1.09000 * 109.58336 * 246.17854 * 7 6 4 33 33 H 1.09001 * 109.49858 * 294.68432 * 8 7 6 34 34 H 1.08999 * 109.52511 * 174.59579 * 8 7 6 35 35 H 1.09001 * 109.46242 * 178.61278 * 9 8 7 36 36 H 1.09000 * 109.45206 * 58.64568 * 9 8 7 37 37 H 1.08993 * 109.49515 * 301.41060 * 10 9 8 38 38 H 1.09002 * 109.52120 * 181.33383 * 10 9 8 39 39 H 0.96999 * 119.99454 * 359.97438 * 15 13 11 40 40 H 0.96998 * 119.99943 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3687 -0.0714 2.2047 6 7 2.1077 -2.0560 1.2481 7 6 1.7766 -2.8401 0.0504 8 6 2.9498 -3.7718 -0.2689 9 6 3.2758 -4.6164 0.9650 10 6 3.6876 -3.6991 2.1188 11 6 2.5227 -2.7667 2.4652 12 1 1.6874 -3.3523 2.8491 13 6 2.9652 -1.7704 3.5057 14 8 3.9526 -1.0923 3.3149 15 7 2.2639 -1.6329 4.6485 16 6 2.6668 -0.7269 5.5953 17 1 3.5459 -0.1231 5.4253 18 6 1.9434 -0.5849 6.7731 19 7 0.8734 -1.3193 6.9797 20 14 2.4919 0.6500 8.0629 21 1 2.4910 2.0136 7.4746 22 1 1.5587 0.6077 9.2172 23 1 3.8626 0.3101 8.5224 24 1 -0.3634 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8835 26 1 -0.3633 0.5028 -0.8963 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6043 -2.1680 -0.7903 32 1 0.8804 -3.4317 0.2373 33 1 3.8216 -3.1780 -0.5440 34 1 2.6798 -4.4270 -1.0971 35 1 4.0944 -5.2977 0.7328 36 1 2.3960 -5.1911 1.2543 37 1 4.5523 -3.1061 1.8213 38 1 3.9425 -4.3021 2.9904 39 1 1.4741 -2.1750 4.8009 40 1 0.3687 -1.2203 7.8021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299641356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:36 Heat of formation + Delta-G solvation = -99.403174 kcal Electronic energy + Delta-G solvation = -22076.885039 eV Core-core repulsion = 18890.445004 eV Total energy + Delta-G solvation = -3186.440036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80458 -39.43059 -38.27405 -35.94500 -35.36253 -33.65808 -33.21574 -32.08204 -28.07933 -27.63046 -26.37856 -24.68298 -23.97701 -21.39712 -21.25796 -20.04901 -19.30846 -18.44168 -17.35115 -16.96947 -16.46201 -16.28613 -15.78041 -15.37941 -15.24453 -14.96071 -14.83712 -14.64841 -14.27970 -13.82946 -13.70562 -13.50645 -13.25812 -13.08961 -12.91291 -12.82060 -12.42635 -12.41083 -12.16592 -12.11684 -12.04434 -11.89688 -11.67168 -11.52885 -11.43218 -10.27923 -10.11568 -9.90035 -9.53102 -8.42238 -5.87765 1.34475 1.35759 1.47177 1.77981 1.82261 2.30398 2.47400 3.10352 3.30291 3.64866 3.84422 3.89236 3.99260 4.05976 4.09012 4.15119 4.26200 4.34974 4.49904 4.60456 4.72267 4.73325 4.85074 4.88929 4.90098 4.92202 5.00119 5.12417 5.15104 5.21461 5.30435 5.31857 5.42245 5.47705 5.60776 6.05028 6.52329 6.67155 7.20353 7.42116 7.63990 8.28105 8.76416 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.006755 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.610030 B = 4144.281276 C = 4986.099152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 C -0.131 4.131 4 C 0.479 3.521 5 O -0.545 6.545 6 N -0.604 5.604 7 C 0.098 3.902 8 C -0.131 4.131 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.136 3.864 12 H 0.089 0.911 13 C 0.474 3.526 14 O -0.620 6.620 15 N -0.579 5.579 16 C -0.314 4.314 17 H 0.065 0.935 18 C -0.020 4.020 19 N -0.928 5.928 20 Si 0.990 3.010 21 H -0.280 1.280 22 H -0.264 1.264 23 H -0.270 1.270 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.388 0.612 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 -7.037 -19.170 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 C -0.189 4.189 4 C 0.268 3.732 5 O -0.420 6.420 6 N -0.340 5.340 7 C -0.022 4.022 8 C -0.169 4.169 9 C -0.147 4.147 10 C -0.153 4.153 11 C 0.029 3.971 12 H 0.107 0.893 13 C 0.262 3.738 14 O -0.505 6.505 15 N -0.217 5.217 16 C -0.444 4.444 17 H 0.084 0.916 18 C -0.218 4.218 19 N -0.570 5.570 20 Si 0.814 3.186 21 H -0.206 1.206 22 H -0.189 1.189 23 H -0.196 1.196 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.144 0.856 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.221 0.779 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.811 -6.238 -18.618 19.836 hybrid contribution 0.116 0.586 1.431 1.551 sum -2.695 -5.652 -17.187 18.292 Atomic orbital electron populations 1.21735 0.90998 1.03416 1.03015 1.21374 0.98853 0.96861 0.95155 1.21626 1.00249 0.94700 1.02328 1.21864 0.77697 0.82605 0.91044 1.90948 1.47686 1.65843 1.37548 1.48201 1.67668 1.05398 1.12742 1.22241 0.98806 0.95104 0.86075 1.21957 0.97983 0.98384 0.98618 1.21527 1.02859 0.96962 0.93360 1.21753 0.95935 0.96952 1.00662 1.21026 0.98629 0.92214 0.85235 0.89324 1.20183 0.85078 0.85353 0.83181 1.90443 1.31387 1.49479 1.79228 1.41759 1.26652 1.36740 1.16500 1.19447 1.11126 1.16615 0.97204 0.91648 1.25963 0.95877 1.00158 0.99809 1.69667 1.17881 1.41555 1.27943 0.85050 0.78338 0.77881 0.77350 1.20582 1.18856 1.19553 0.90751 0.94909 0.88115 0.85606 0.94346 0.88303 0.94877 0.86951 0.89094 0.92756 0.86731 0.89736 0.89921 0.93547 0.91258 0.77876 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.11 71.98 0.66 -2.13 16 2 C -0.10 -2.62 2.42 -11.54 -0.03 -2.65 16 3 C -0.13 -3.70 8.69 71.98 0.63 -3.07 16 4 C 0.48 18.61 6.70 87.66 0.59 19.20 16 5 O -0.54 -29.42 11.59 20.71 0.24 -29.18 16 6 N -0.60 -19.66 2.97 -799.20 -2.38 -22.03 16 7 C 0.10 1.80 5.89 86.36 0.51 2.31 16 8 C -0.13 -2.10 6.08 30.67 0.19 -1.91 16 9 C -0.11 -2.13 5.88 30.62 0.18 -1.95 16 10 C -0.11 -3.64 5.29 30.67 0.16 -3.48 16 11 C 0.14 5.24 3.31 44.23 0.15 5.39 16 12 H 0.09 3.09 7.94 -2.39 -0.02 3.07 16 13 C 0.47 25.65 4.34 87.66 0.38 26.03 16 14 O -0.62 -39.13 14.09 20.67 0.29 -38.84 16 15 N -0.58 -33.85 5.29 -306.98 -1.62 -35.47 16 16 C -0.31 -20.11 9.68 84.04 0.81 -19.30 16 17 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 18 C -0.02 -1.19 5.50 84.93 0.47 -0.73 16 19 N -0.93 -54.68 13.05 21.66 0.28 -54.39 16 20 Si 0.99 47.65 29.55 68.60 2.03 49.67 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H 0.07 1.31 7.73 -2.39 -0.02 1.29 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.13 2.23 6.25 -2.39 -0.01 2.22 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.14 7.88 -2.39 -0.02 1.12 16 31 H 0.11 1.46 5.40 -2.38 -0.01 1.45 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.75 7.86 -2.39 -0.02 1.73 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.39 21.75 7.75 -92.71 -0.72 21.03 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -88.09 318.47 3.84 -84.25 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.31 Total: 28.28 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 4.69 Total: 17.72 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.72 Total: -111.89 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: 0.53 Total: -68.02 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -88.09 3.84 -84.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299641356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.156 kcal (2) G-P(sol) polarization free energy of solvation -88.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds