Wall clock time and date at job start Mon Mar 30 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 C 1.50702 * 109.47397 * 119.99765 * 2 1 3 5 5 O 1.21283 * 119.99692 * 354.09608 * 4 2 1 6 6 N 1.34765 * 120.00215 * 174.09815 * 4 2 1 7 7 C 1.46965 * 120.65789 * 5.97160 * 6 4 2 8 8 C 1.53188 * 108.89273 * 233.54117 * 7 6 4 9 9 C 1.53050 * 109.30810 * 305.44060 * 8 7 6 10 10 C 1.53039 * 109.53949 * 61.36623 * 9 8 7 11 11 C 1.46933 * 120.63005 * 186.15625 * 6 4 2 12 12 H 1.09004 * 109.58613 * 246.31640 * 11 6 4 13 13 C 1.50699 * 109.58641 * 6.60334 * 11 6 4 14 14 O 1.21296 * 119.99841 * 61.12906 * 13 11 6 15 15 N 1.34768 * 119.99986 * 241.13085 * 13 11 6 16 16 C 1.37100 * 120.00103 * 180.02562 * 15 13 11 17 17 H 1.08004 * 120.00129 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00300 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99451 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46897 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47112 * 299.99306 * 20 18 16 23 23 H 1.48497 * 109.47411 * 59.99816 * 20 18 16 24 24 H 1.09003 * 109.47326 * 300.00052 * 1 2 3 25 25 H 1.09000 * 109.47406 * 59.99833 * 1 2 3 26 26 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47422 * 240.00110 * 2 1 3 28 28 H 1.08997 * 109.47146 * 174.35684 * 3 2 1 29 29 H 1.09002 * 109.47081 * 294.35421 * 3 2 1 30 30 H 1.09006 * 109.46997 * 54.35553 * 3 2 1 31 31 H 1.08999 * 109.46484 * 113.74984 * 7 6 4 32 32 H 1.09007 * 109.70464 * 353.47149 * 7 6 4 33 33 H 1.08998 * 109.49747 * 185.49553 * 8 7 6 34 34 H 1.08997 * 109.49945 * 65.38972 * 8 7 6 35 35 H 1.09001 * 109.45724 * 301.34136 * 9 8 7 36 36 H 1.08998 * 109.44450 * 181.38221 * 9 8 7 37 37 H 1.08996 * 109.50000 * 178.68408 * 10 9 8 38 38 H 1.08998 * 109.52365 * 58.59586 * 10 9 8 39 39 H 0.97003 * 120.00405 * 359.97438 * 15 13 11 40 40 H 0.96994 * 120.00398 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2495 -1.0767 2.0812 6 7 3.3515 -0.9384 1.3855 7 6 4.3244 -0.3882 0.4313 8 6 5.2043 -1.5275 -0.0925 9 6 5.8334 -2.2662 1.0910 10 6 4.7299 -2.8698 1.9628 11 6 3.8446 -1.7456 2.5099 12 1 4.4270 -1.1168 3.1834 13 6 2.6774 -2.3393 3.2557 14 8 1.9161 -3.0944 2.6887 15 7 2.4794 -2.0312 4.5527 16 6 1.4178 -2.5717 5.2314 17 1 0.7400 -3.2441 4.7265 18 6 1.2134 -2.2536 6.5685 19 7 2.0379 -1.4351 7.1826 20 14 -0.2334 -2.9895 7.4929 21 1 -0.2282 -2.4965 8.8937 22 1 -1.5002 -2.5872 6.8307 23 1 -0.1216 -4.4703 7.4894 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1253 1.4442 0.1011 29 1 1.7615 1.9264 -0.9362 30 1 1.5964 1.9847 0.8352 31 1 4.9464 0.3528 0.9334 32 1 3.7985 0.0798 -0.4011 33 1 5.9913 -1.1178 -0.7256 34 1 4.5948 -2.2211 -0.6718 35 1 6.4228 -1.5667 1.6838 36 1 6.4794 -3.0620 0.7202 37 1 5.1792 -3.4154 2.7925 38 1 4.1247 -3.5509 1.3646 39 1 3.0884 -1.4276 5.0063 40 1 2.7889 -1.0527 6.7025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299641358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:40 Heat of formation + Delta-G solvation = -69.539827 kcal Electronic energy + Delta-G solvation = -22125.264323 eV Core-core repulsion = 18940.119259 eV Total energy + Delta-G solvation = -3185.145064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45448 -37.75252 -36.98907 -34.50832 -33.87540 -32.50622 -31.23502 -30.48973 -27.10778 -26.04019 -24.48535 -23.39978 -22.71091 -20.30088 -19.93528 -18.42720 -17.61266 -17.09942 -15.78424 -15.71950 -15.15554 -14.62937 -14.42409 -13.98961 -13.86847 -13.66977 -13.59350 -13.21322 -13.08007 -12.46846 -12.28740 -12.22421 -11.93348 -11.69017 -11.33369 -11.15420 -10.98807 -10.96193 -10.90388 -10.80042 -10.73854 -10.48844 -10.09013 -9.65777 -9.40969 -8.77925 -8.32495 -8.09260 -7.76195 -6.54014 -3.63147 3.08708 3.18642 3.44944 3.48000 3.66545 4.24440 4.37358 4.59259 4.75228 4.83503 4.87525 4.97729 5.04768 5.07711 5.25505 5.33868 5.43259 5.45572 5.54532 5.61377 5.62520 5.75315 5.77766 5.88020 5.91919 5.96302 5.97863 6.01603 6.12569 6.22348 6.26196 6.45254 6.49349 6.83474 7.77560 8.02370 8.30111 8.72786 8.83427 9.08925 9.71910 10.17092 10.90049 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.006656 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.609677 B = 4205.491965 C = 5064.465231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.153 4.153 4 C 0.499 3.501 5 O -0.470 6.470 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.119 4.119 11 C 0.134 3.866 12 H 0.069 0.931 13 C 0.477 3.523 14 O -0.572 6.572 15 N -0.575 5.575 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.016 4.016 19 N -0.911 5.911 20 Si 1.091 2.909 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.371 0.629 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 5.344 -15.570 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.211 4.211 4 C 0.285 3.715 5 O -0.340 6.340 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.175 4.175 9 C -0.155 4.155 10 C -0.157 4.157 11 C 0.027 3.973 12 H 0.087 0.913 13 C 0.262 3.738 14 O -0.455 6.455 15 N -0.213 5.213 16 C -0.491 4.491 17 H 0.113 0.887 18 C -0.217 4.217 19 N -0.552 5.552 20 Si 0.917 3.083 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.203 0.797 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.899 4.573 -13.970 15.839 hybrid contribution 1.361 0.467 -1.367 1.985 sum 7.260 5.040 -15.337 17.701 Atomic orbital electron populations 1.21589 0.92606 1.02958 1.01702 1.21240 0.98276 0.96823 0.96776 1.22050 1.01719 0.94601 1.02699 1.20691 0.81844 0.80246 0.88685 1.90941 1.53884 1.47319 1.41811 1.47925 1.05913 1.53082 1.27579 1.21934 0.91480 0.95659 0.92888 1.21950 0.99195 0.98206 0.98118 1.21518 0.97521 0.99803 0.96638 1.21763 0.96439 0.97418 1.00125 1.21092 0.95584 0.92507 0.88110 0.91285 1.19001 0.86547 0.85574 0.82633 1.90500 1.47243 1.40568 1.67230 1.41758 1.26887 1.43220 1.09396 1.20449 1.05617 1.27496 0.95490 0.88695 1.26395 1.03690 0.97489 0.94141 1.70887 1.15340 1.30145 1.38814 0.83142 0.73879 0.75572 0.75659 1.20594 1.21232 1.21242 0.91778 0.92544 0.91919 0.89330 0.91451 0.91748 0.91951 0.91667 0.88946 0.90973 0.91389 0.91852 0.91634 0.90813 0.90511 0.79688 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.50 37.16 0.32 -1.57 16 2 C -0.11 -1.51 2.43 -91.77 -0.22 -1.74 16 3 C -0.15 -1.64 8.69 37.16 0.32 -1.32 16 4 C 0.50 9.59 6.74 -10.99 -0.07 9.51 16 5 O -0.47 -11.93 11.74 -19.14 -0.22 -12.16 16 6 N -0.61 -10.16 2.98 -166.50 -0.50 -10.66 16 7 C 0.10 1.16 5.03 -3.69 -0.02 1.14 16 8 C -0.14 -1.37 6.08 -26.61 -0.16 -1.53 16 9 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 10 C -0.12 -1.89 5.32 -26.61 -0.14 -2.03 16 11 C 0.13 2.55 3.31 -68.75 -0.23 2.32 16 12 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 13 C 0.48 12.21 4.34 -10.99 -0.05 12.17 16 14 O -0.57 -16.90 14.17 -19.15 -0.27 -17.17 16 15 N -0.57 -15.82 5.28 -10.96 -0.06 -15.88 16 16 C -0.36 -10.99 9.68 -14.93 -0.14 -11.14 16 17 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 18 C -0.02 -0.48 5.50 -17.46 -0.10 -0.58 16 19 N -0.91 -27.22 13.68 55.50 0.76 -26.46 16 20 Si 1.09 26.22 29.92 -169.99 -5.09 21.13 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.04 7.67 -51.93 -0.40 0.65 16 28 H 0.07 0.63 5.10 -51.93 -0.26 0.37 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.85 4.45 -51.92 -0.23 0.62 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 39 H 0.37 9.58 6.57 -40.82 -0.27 9.31 16 40 H 0.26 7.47 6.77 -40.82 -0.28 7.19 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -37.71 313.65 -7.38 -45.10 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.08 Total: 7.61 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.65 Total: 3.76 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.21 Total: -53.00 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.50 Total: -29.33 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.09 Total: 21.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.71 -7.38 -45.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299641358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.444 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds