Wall clock time and date at job start Mon Mar 30 2020 00:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46841 * 2 1 4 4 C 1.50701 * 109.46793 * 240.00297 * 2 1 3 5 5 H 1.07999 * 119.99801 * 241.34158 * 4 2 1 6 6 C 1.37880 * 120.00103 * 61.34937 * 4 2 1 7 7 N 1.31517 * 119.99839 * 193.97644 * 6 4 2 8 8 Si 1.86794 * 120.00155 * 13.97095 * 6 4 2 9 9 H 1.48498 * 109.47122 * 84.54813 * 8 6 4 10 10 H 1.48498 * 109.47545 * 204.55104 * 8 6 4 11 11 H 1.48508 * 109.47178 * 324.55290 * 8 6 4 12 12 C 1.52996 * 109.47291 * 120.00068 * 2 1 3 13 13 N 1.46497 * 109.47336 * 300.00111 * 12 2 1 14 14 C 1.34779 * 120.00450 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99511 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00380 * 179.72574 * 14 13 12 17 17 H 1.09005 * 109.59826 * 300.59911 * 16 14 13 18 18 C 1.53342 * 109.60367 * 180.28101 * 16 14 13 19 19 C 1.53076 * 108.42477 * 172.71375 * 18 16 14 20 20 C 1.50174 * 109.89246 * 48.89674 * 19 18 16 21 21 O 1.21286 * 118.24542 * 162.44331 * 20 19 18 22 22 N 1.33350 * 123.50717 * 342.41452 * 20 19 18 23 23 C 1.45749 * 124.10929 * 2.22862 * 22 20 19 24 24 H 1.09003 * 109.47182 * 309.36527 * 1 2 3 25 25 H 1.09002 * 109.47300 * 69.36599 * 1 2 3 26 26 H 1.09000 * 109.47088 * 189.36607 * 1 2 3 27 27 H 1.09001 * 109.47274 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47623 * 300.00298 * 3 2 1 29 29 H 1.09007 * 109.47140 * 60.00447 * 3 2 1 30 30 H 0.96993 * 119.99911 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47370 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.47058 * 59.99879 * 12 2 1 33 33 H 0.97005 * 119.99969 * 0.02562 * 13 12 2 34 34 H 1.09001 * 109.67137 * 292.44368 * 18 16 14 35 35 H 1.09000 * 109.67681 * 52.97519 * 18 16 14 36 36 H 1.09006 * 109.40056 * 169.02756 * 19 18 16 37 37 H 1.08997 * 109.39705 * 288.76707 * 19 18 16 38 38 H 0.97006 * 117.94575 * 182.22651 * 22 20 19 39 39 H 1.08998 * 109.30562 * 220.61111 * 23 22 20 40 40 H 1.09006 * 109.30402 * 101.23248 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6351 -1.6009 -1.1316 6 6 1.7222 -0.2232 -2.4826 7 7 1.9156 -0.9724 -3.5461 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4817 -2.7083 10 1 0.2468 1.5867 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5742 -1.4775 3.7807 16 6 1.3797 0.2224 4.8999 17 1 1.7379 1.2519 4.8952 18 6 1.8934 -0.4952 6.1540 19 6 1.5295 0.3492 7.3778 20 6 0.0812 0.7412 7.3159 21 8 -0.4537 1.1247 8.3346 22 7 -0.6481 0.6906 6.2006 23 6 -0.1493 0.2078 4.9191 24 1 -0.3634 0.6518 0.7945 25 1 -0.3634 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1672 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6979 -0.6296 -4.4269 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9937 0.7578 2.3564 34 1 1.4254 -1.4764 6.2329 35 1 2.9759 -0.6081 6.0947 36 1 1.7096 -0.2297 8.2837 37 1 2.1472 1.2471 7.3947 38 1 -1.5683 0.9942 6.2451 39 1 -0.5257 0.8482 4.1215 40 1 -0.5018 -0.8107 4.7558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315405782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:55 Heat of formation + Delta-G solvation = -73.389264 kcal Electronic energy + Delta-G solvation = -21052.558002 eV Core-core repulsion = 17867.246014 eV Total energy + Delta-G solvation = -3185.311988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79277 -39.41940 -37.05837 -36.24469 -33.52025 -33.22416 -31.65090 -30.21145 -26.50891 -26.13328 -25.10486 -24.84997 -23.18278 -20.66537 -19.52287 -19.08650 -17.86346 -16.84314 -16.35609 -16.15845 -15.70999 -15.28773 -15.18929 -14.95888 -14.34652 -14.13039 -13.84566 -13.57325 -13.10910 -12.97780 -12.69288 -12.31680 -12.14558 -12.08816 -12.04942 -11.54041 -11.36054 -11.29204 -10.52449 -10.40293 -10.25614 -10.15569 -10.01075 -9.69849 -9.41281 -9.20034 -8.76769 -8.68779 -8.52637 -6.21321 -4.19199 2.37799 2.66841 3.00009 3.17604 3.24532 3.33356 3.38786 4.25347 4.28864 4.33791 4.40419 4.51546 4.94841 5.02452 5.06615 5.09137 5.17342 5.38260 5.50945 5.67903 5.73375 5.91209 5.95123 5.96124 6.25065 6.37361 6.41737 6.45166 6.52555 6.59952 6.64440 6.85126 6.99851 7.12604 7.33564 7.64123 7.74668 7.92430 8.34691 8.42018 8.83922 9.42189 10.91757 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037431 B = 0.004165 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.857441 B = 6720.634008 C = 7116.506075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.141 3.859 13 N -0.720 5.720 14 C 0.514 3.486 15 O -0.538 6.538 16 C -0.127 4.127 17 H 0.106 0.894 18 C -0.104 4.104 19 C -0.136 4.136 20 C 0.520 3.480 21 O -0.561 6.561 22 N -0.717 5.717 23 C 0.118 3.882 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.085 0.915 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 5.291 15.902 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.019 3.981 13 N -0.371 5.371 14 C 0.298 3.702 15 O -0.416 6.416 16 C -0.149 4.149 17 H 0.124 0.876 18 C -0.141 4.141 19 C -0.176 4.176 20 C 0.307 3.693 21 O -0.440 6.440 22 N -0.370 5.370 23 C -0.007 4.007 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.237 0.763 39 H 0.103 0.897 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.119 4.649 16.259 17.196 hybrid contribution -0.913 1.507 -0.606 1.864 sum -4.033 6.156 15.653 17.297 Atomic orbital electron populations 1.22301 0.97834 0.99810 1.00002 1.18722 0.92514 0.92255 0.93806 1.22367 1.01253 0.98295 0.98570 1.20706 1.34225 1.12395 0.87971 0.90529 1.24977 0.94648 0.97285 0.95791 1.69946 1.47996 1.35909 0.98765 0.87296 0.79328 0.85526 0.76036 1.21342 1.23354 1.17566 1.21550 0.98739 0.95859 0.82000 1.46370 1.52672 1.31805 1.06205 1.20099 0.81035 0.84749 0.84289 1.90716 1.38035 1.26126 1.86678 1.21674 0.95747 1.02223 0.95254 0.87639 1.21493 1.03420 0.98667 0.90569 1.21699 0.92378 1.02519 1.00956 1.20278 0.89643 0.76809 0.82561 1.90763 1.72244 1.48055 1.32971 1.45428 1.16148 1.65891 1.09483 1.21330 0.92921 1.01080 0.85325 0.96021 0.92485 0.93350 0.92750 0.94003 0.95240 0.92492 0.91833 0.91710 0.76897 0.90317 0.89205 0.87689 0.87999 0.76275 0.89707 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.53 37.16 0.28 -2.37 16 2 C 0.03 0.57 0.50 -155.67 -0.08 0.49 16 3 C -0.15 -2.78 7.52 37.16 0.28 -2.50 16 4 C -0.52 -13.24 8.62 -34.44 -0.30 -13.54 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.04 5.32 -17.82 -0.09 1.94 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.89 20.29 22.79 -169.99 -3.87 16.41 16 9 H -0.29 -6.55 7.10 56.52 0.40 -6.15 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.25 -5.12 4.65 56.52 0.26 -4.86 16 12 C 0.14 2.56 4.49 -4.05 -0.02 2.54 16 13 N -0.72 -9.94 4.92 -60.30 -0.30 -10.24 16 14 C 0.51 6.88 7.13 -10.99 -0.08 6.80 16 15 O -0.54 -9.38 15.90 5.55 0.09 -9.30 16 16 C -0.13 -1.17 2.60 -91.64 -0.24 -1.40 16 17 H 0.11 0.81 8.12 -51.93 -0.42 0.39 16 18 C -0.10 -0.93 4.71 -26.51 -0.12 -1.06 16 19 C -0.14 -1.12 6.03 -28.10 -0.17 -1.29 16 20 C 0.52 5.54 7.71 -11.87 -0.09 5.45 16 21 O -0.56 -8.22 17.78 5.55 0.10 -8.13 16 22 N -0.72 -6.09 5.45 -61.39 -0.33 -6.42 16 23 C 0.12 0.92 6.34 -4.49 -0.03 0.89 16 24 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 25 H 0.06 1.16 4.30 -51.93 -0.22 0.94 16 26 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.85 2.25 -51.93 -0.12 0.73 16 29 H 0.03 0.44 6.86 -51.92 -0.36 0.09 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.40 4.58 5.94 -40.82 -0.24 4.34 16 34 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.01 8.80 -40.82 -0.36 2.65 16 39 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 40 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -32.21 308.72 -5.53 -37.74 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.98 Total: 4.47 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.66 Total: -4.06 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.14 Total: -41.79 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.19 Total: -17.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -3.87 Total: 16.41 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.21 -5.53 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315405782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.651 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds