Wall clock time and date at job start Mon Mar 30 2020 00:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46841 * 2 1 4 4 C 1.50701 * 109.46793 * 240.00297 * 2 1 3 5 5 H 1.07999 * 119.99801 * 241.34158 * 4 2 1 6 6 C 1.37880 * 120.00103 * 61.34937 * 4 2 1 7 7 N 1.31517 * 119.99839 * 193.97644 * 6 4 2 8 8 Si 1.86794 * 120.00155 * 13.97095 * 6 4 2 9 9 H 1.48498 * 109.47122 * 84.54813 * 8 6 4 10 10 H 1.48498 * 109.47545 * 204.55104 * 8 6 4 11 11 H 1.48508 * 109.47178 * 324.55290 * 8 6 4 12 12 C 1.52996 * 109.47291 * 120.00068 * 2 1 3 13 13 N 1.46497 * 109.47336 * 300.00111 * 12 2 1 14 14 C 1.34779 * 120.00450 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99511 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00380 * 179.72574 * 14 13 12 17 17 H 1.09005 * 109.59826 * 300.59911 * 16 14 13 18 18 C 1.53342 * 109.60367 * 180.28101 * 16 14 13 19 19 C 1.53076 * 108.42477 * 172.71375 * 18 16 14 20 20 C 1.50174 * 109.89246 * 48.89674 * 19 18 16 21 21 O 1.21286 * 118.24542 * 162.44331 * 20 19 18 22 22 N 1.33350 * 123.50717 * 342.41452 * 20 19 18 23 23 C 1.45749 * 124.10929 * 2.22862 * 22 20 19 24 24 H 1.09003 * 109.47182 * 309.36527 * 1 2 3 25 25 H 1.09002 * 109.47300 * 69.36599 * 1 2 3 26 26 H 1.09000 * 109.47088 * 189.36607 * 1 2 3 27 27 H 1.09001 * 109.47274 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47623 * 300.00298 * 3 2 1 29 29 H 1.09007 * 109.47140 * 60.00447 * 3 2 1 30 30 H 0.96993 * 119.99911 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47370 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.47058 * 59.99879 * 12 2 1 33 33 H 0.97005 * 119.99969 * 0.02562 * 13 12 2 34 34 H 1.09001 * 109.67137 * 292.44368 * 18 16 14 35 35 H 1.09000 * 109.67681 * 52.97519 * 18 16 14 36 36 H 1.09006 * 109.40056 * 169.02756 * 19 18 16 37 37 H 1.08997 * 109.39705 * 288.76707 * 19 18 16 38 38 H 0.97006 * 117.94575 * 182.22651 * 22 20 19 39 39 H 1.08998 * 109.30562 * 220.61111 * 23 22 20 40 40 H 1.09006 * 109.30402 * 101.23248 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6351 -1.6009 -1.1316 6 6 1.7222 -0.2232 -2.4826 7 7 1.9156 -0.9724 -3.5461 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4817 -2.7083 10 1 0.2468 1.5867 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5742 -1.4775 3.7807 16 6 1.3797 0.2224 4.8999 17 1 1.7379 1.2519 4.8952 18 6 1.8934 -0.4952 6.1540 19 6 1.5295 0.3492 7.3778 20 6 0.0812 0.7412 7.3159 21 8 -0.4537 1.1247 8.3346 22 7 -0.6481 0.6906 6.2006 23 6 -0.1493 0.2078 4.9191 24 1 -0.3634 0.6518 0.7945 25 1 -0.3634 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1672 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6979 -0.6296 -4.4269 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9937 0.7578 2.3564 34 1 1.4254 -1.4764 6.2329 35 1 2.9759 -0.6081 6.0947 36 1 1.7096 -0.2297 8.2837 37 1 2.1472 1.2471 7.3947 38 1 -1.5683 0.9942 6.2451 39 1 -0.5257 0.8482 4.1215 40 1 -0.5018 -0.8107 4.7558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315405782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:54 Heat of formation + Delta-G solvation = -99.503033 kcal Electronic energy + Delta-G solvation = -21053.690380 eV Core-core repulsion = 17867.246014 eV Total energy + Delta-G solvation = -3186.444366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66653 -40.50127 -38.49547 -37.20848 -35.00512 -33.96720 -33.45049 -31.08356 -27.98775 -27.52160 -26.89232 -25.65600 -24.10259 -21.72423 -20.94453 -20.09057 -18.81976 -18.09679 -17.71561 -17.20971 -16.96304 -16.54976 -16.32922 -16.09968 -15.29547 -15.02537 -14.97601 -14.81792 -14.51403 -14.34405 -14.10542 -13.95589 -13.72334 -12.95814 -12.93482 -12.74357 -12.37269 -12.27804 -12.09368 -11.95921 -11.92372 -11.72188 -11.07529 -10.84906 -10.81526 -10.59499 -10.35461 -10.14064 -9.96400 -8.28329 -6.30041 1.38226 1.40021 1.53262 1.58468 1.64418 2.18927 2.36826 2.37740 3.08490 3.53415 3.56706 3.70319 3.76389 4.10760 4.25893 4.30385 4.37398 4.41780 4.45905 4.56980 4.74377 4.80137 4.87254 4.89534 4.91270 5.00253 5.04167 5.11075 5.20104 5.23927 5.46706 5.59068 5.75230 5.80433 5.84429 6.27368 6.32503 6.65816 6.75862 7.17900 7.32513 7.35362 8.89005 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037431 B = 0.004165 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.857441 B = 6720.634008 C = 7116.506075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.026 3.974 3 C -0.148 4.148 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.015 3.985 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.284 1.284 10 H -0.319 1.319 11 H -0.198 1.198 12 C 0.157 3.843 13 N -0.707 5.707 14 C 0.518 3.482 15 O -0.583 6.583 16 C -0.116 4.116 17 H 0.134 0.866 18 C -0.101 4.101 19 C -0.127 4.127 20 C 0.516 3.484 21 O -0.607 6.607 22 N -0.706 5.706 23 C 0.119 3.881 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.408 0.592 39 H 0.115 0.885 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 8.236 17.880 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 C -0.205 4.205 4 C -0.556 4.556 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.211 1.211 10 H -0.249 1.249 11 H -0.122 1.122 12 C 0.033 3.967 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.462 6.462 16 C -0.137 4.137 17 H 0.152 0.848 18 C -0.139 4.139 19 C -0.166 4.166 20 C 0.305 3.695 21 O -0.490 6.490 22 N -0.357 5.357 23 C -0.005 4.005 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.245 0.755 39 H 0.133 0.867 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.678 7.617 18.260 20.330 hybrid contribution -0.350 0.425 -1.205 1.325 sum -5.028 8.042 17.054 19.514 Atomic orbital electron populations 1.22221 0.95826 1.00808 1.01005 1.18665 0.93959 0.93079 0.91772 1.22303 1.00959 0.96788 1.00409 1.21080 1.32784 1.11041 0.90730 0.95592 1.25889 0.95458 1.01649 0.95248 1.70122 1.50864 1.38383 0.99437 0.86351 0.79398 0.79808 0.77049 1.21131 1.24877 1.12157 1.21012 0.97375 0.95036 0.83322 1.46078 1.52843 1.32048 1.04990 1.20770 0.79826 0.84011 0.84970 1.90714 1.39973 1.28261 1.87276 1.21634 0.96777 1.02875 0.92457 0.84798 1.21441 1.03034 0.98371 0.91017 1.21666 0.91153 1.03185 1.00621 1.20653 0.90432 0.76129 0.82315 1.90752 1.73230 1.50394 1.34601 1.45361 1.16354 1.64780 1.09196 1.21424 0.91708 1.01794 0.85600 0.90927 0.93948 0.93974 0.93630 0.94919 0.90269 0.92780 0.93995 0.94011 0.74887 0.91473 0.89690 0.87214 0.86067 0.75519 0.86714 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 7.53 71.98 0.54 -4.20 16 2 C 0.03 1.02 0.50 -52.93 -0.03 0.99 16 3 C -0.15 -4.96 7.52 71.98 0.54 -4.42 16 4 C -0.52 -27.38 8.62 25.60 0.22 -27.16 16 5 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16 6 C 0.01 0.81 5.32 84.65 0.45 1.26 16 7 N -0.95 -57.76 13.96 21.45 0.30 -57.46 16 8 Si 0.94 40.89 22.79 68.60 1.56 42.46 16 9 H -0.28 -12.12 7.10 99.48 0.71 -11.41 16 10 H -0.32 -14.47 7.11 99.48 0.71 -13.77 16 11 H -0.20 -6.97 4.65 99.48 0.46 -6.51 16 12 C 0.16 5.54 4.49 86.38 0.39 5.93 16 13 N -0.71 -17.01 4.92 -463.08 -2.28 -19.29 16 14 C 0.52 12.41 7.13 87.65 0.62 13.03 16 15 O -0.58 -19.79 15.90 -3.04 -0.05 -19.84 16 16 C -0.12 -1.66 2.60 -11.46 -0.03 -1.69 16 17 H 0.13 1.29 8.12 -2.38 -0.02 1.27 16 18 C -0.10 -1.56 4.71 30.73 0.14 -1.42 16 19 C -0.13 -1.73 6.03 29.71 0.18 -1.55 16 20 C 0.52 9.63 7.71 87.71 0.68 10.30 16 21 O -0.61 -16.80 17.78 -3.05 -0.05 -16.85 16 22 N -0.71 -9.45 5.45 -467.33 -2.55 -12.00 16 23 C 0.12 1.32 6.34 86.49 0.55 1.87 16 24 H 0.07 1.70 7.13 -2.39 -0.02 1.68 16 25 H 0.04 1.55 4.30 -2.39 -0.01 1.54 16 26 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.03 1.17 2.25 -2.39 -0.01 1.17 16 29 H 0.08 1.87 6.86 -2.38 -0.02 1.86 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.41 7.05 5.94 -92.70 -0.55 6.50 16 34 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.08 1.44 7.90 -2.39 -0.02 1.42 16 36 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.41 4.71 8.80 -92.70 -0.82 3.89 16 39 H 0.11 0.68 7.89 -2.39 -0.02 0.66 16 40 H 0.07 0.93 8.11 -2.38 -0.02 0.91 16 Total: -1.00 -75.44 308.72 0.65 -74.79 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.55 Total: 15.24 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.26 Total: -7.05 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -4.52 Total: -88.75 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.10 Total: -36.69 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.56 Total: 42.46 kcal Total: -75.44 0.65 -74.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315405782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.709 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds