Wall clock time and date at job start Mon Mar 30 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 C 1.50693 * 109.47403 * 239.99904 * 2 1 3 5 5 H 1.08000 * 120.00042 * 239.99835 * 4 2 1 6 6 C 1.37878 * 120.00088 * 60.00031 * 4 2 1 7 7 N 1.31513 * 119.99655 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00285 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47215 * 89.99690 * 8 6 4 10 10 H 1.48498 * 109.47104 * 209.99734 * 8 6 4 11 11 H 1.48506 * 109.46905 * 329.99788 * 8 6 4 12 12 C 1.53008 * 109.47183 * 119.99818 * 2 1 3 13 13 N 1.46498 * 109.46993 * 300.00010 * 12 2 1 14 14 C 1.34773 * 119.99949 * 179.97438 * 13 12 2 15 15 O 1.21275 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00167 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.73266 * 60.40609 * 16 14 13 18 18 C 1.53306 * 109.61286 * 180.91871 * 16 14 13 19 19 C 1.53068 * 108.45714 * 187.36029 * 18 16 14 20 20 C 1.50175 * 109.81907 * 310.98922 * 19 18 16 21 21 O 1.21279 * 118.24601 * 197.62393 * 20 19 18 22 22 N 1.33355 * 123.50957 * 17.60622 * 20 19 18 23 23 C 1.45747 * 124.10720 * 357.77554 * 22 20 19 24 24 H 1.09002 * 109.47190 * 299.99773 * 1 2 3 25 25 H 1.08997 * 109.47287 * 60.00587 * 1 2 3 26 26 H 1.09005 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47384 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47403 * 299.99750 * 3 2 1 29 29 H 1.09007 * 109.47703 * 60.00238 * 3 2 1 30 30 H 0.97006 * 119.99779 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46943 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46905 * 60.00429 * 12 2 1 33 33 H 0.97002 * 120.00342 * 0.02562 * 13 12 2 34 34 H 1.09001 * 109.71257 * 67.57860 * 18 16 14 35 35 H 1.09006 * 109.60363 * 307.06908 * 18 16 14 36 36 H 1.09002 * 109.40169 * 190.90432 * 19 18 16 37 37 H 1.09003 * 109.40095 * 71.07949 * 19 18 16 38 38 H 0.97002 * 117.94587 * 177.79323 * 22 20 19 39 39 H 1.08998 * 109.30193 * 139.40921 * 23 22 20 40 40 H 1.08997 * 109.30045 * 258.78542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4773 3.7809 16 6 1.3740 0.2188 4.9000 17 1 0.2841 0.2150 4.9076 18 6 1.9017 -0.4881 6.1539 19 6 1.2314 0.1360 7.3803 20 6 1.3270 1.6328 7.3064 21 8 1.1478 2.2703 8.3224 22 7 1.5989 2.2986 6.1834 23 6 1.8819 1.6613 4.9036 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7579 2.3565 34 1 2.9821 -0.3600 6.2210 35 1 1.6600 -1.5499 6.1041 36 1 1.7308 -0.2146 8.2836 37 1 0.1824 -0.1590 7.4090 38 1 1.6091 3.2678 6.2207 39 1 1.3893 2.2186 4.1068 40 1 2.9579 1.6648 4.7295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315405784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:59 Heat of formation + Delta-G solvation = -93.657732 kcal Electronic energy + Delta-G solvation = -20961.975451 eV Core-core repulsion = 17775.784556 eV Total energy + Delta-G solvation = -3186.190895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71163 -39.29547 -36.74705 -36.10000 -33.46409 -33.15062 -31.17179 -29.93814 -25.81357 -25.78605 -25.16610 -24.78451 -23.06339 -20.59397 -19.30191 -18.84217 -17.82528 -16.76635 -16.29467 -15.87177 -15.53870 -15.21459 -14.93007 -14.63231 -14.27433 -13.97562 -13.70192 -13.41782 -12.98625 -12.74519 -12.29989 -12.02471 -11.96837 -11.48832 -11.39963 -11.26810 -11.21993 -10.92461 -10.74799 -10.46914 -10.26615 -9.94615 -9.72058 -9.69827 -9.35988 -9.31385 -8.86443 -8.56206 -8.40566 -6.08324 -4.18589 2.44074 2.77416 3.08059 3.24278 3.31710 3.34790 3.52477 4.33573 4.34659 4.41706 4.48978 4.60941 5.02587 5.09829 5.17387 5.18787 5.26353 5.46517 5.57552 5.80216 5.97814 6.13515 6.23489 6.41641 6.52065 6.67431 6.72626 6.83297 6.90253 6.93090 7.06867 7.26772 7.47551 7.63037 7.90184 7.93387 7.98847 8.06787 8.31006 8.52794 8.82047 9.47760 10.93026 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.003819 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.562136 B = 7329.045151 C = 7677.484592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.513 3.487 15 O -0.544 6.544 16 C -0.127 4.127 17 H 0.105 0.895 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.520 3.480 21 O -0.562 6.562 22 N -0.717 5.717 23 C 0.118 3.882 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.086 0.914 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 2.052 12.735 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.364 5.364 14 C 0.297 3.703 15 O -0.422 6.422 16 C -0.149 4.149 17 H 0.123 0.877 18 C -0.141 4.141 19 C -0.175 4.175 20 C 0.307 3.693 21 O -0.442 6.442 22 N -0.369 5.369 23 C -0.007 4.007 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.612 1.529 13.142 13.245 hybrid contribution 0.001 0.301 -1.137 1.176 sum -0.610 1.830 12.006 12.160 Atomic orbital electron populations 1.21836 0.97741 0.99205 1.00078 1.18363 0.92798 0.92775 0.90588 1.21831 0.98603 0.98309 1.00060 1.20974 1.31597 1.12148 0.89870 0.92426 1.24875 0.94824 0.94886 0.98874 1.69796 1.36597 1.22719 1.23292 0.86572 0.79342 0.79405 0.82565 1.20699 1.21252 1.19886 1.21759 0.98226 0.95862 0.83329 1.46373 1.52339 1.31666 1.06056 1.20101 0.80944 0.84898 0.84394 1.90692 1.38186 1.26553 1.86747 1.21665 1.02869 0.95055 0.95284 0.87652 1.21482 1.01085 1.00952 0.90616 1.21699 1.04080 0.90871 1.00881 1.20274 0.75268 0.91196 0.82559 1.90757 1.50885 1.69105 1.33405 1.45431 1.71511 1.10759 1.09177 1.21341 1.01632 0.92382 0.85333 0.97560 0.89570 0.95421 0.95398 0.89578 0.97585 0.92966 0.92558 0.92590 0.76690 0.90396 0.89264 0.87747 0.88005 0.76277 0.89600 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 4 C -0.51 -12.74 8.01 -34.44 -0.28 -13.02 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.78 9.35 55.43 0.52 -22.26 16 8 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.13 2.55 4.50 -4.04 -0.02 2.53 16 13 N -0.71 -10.97 4.86 -60.29 -0.29 -11.26 16 14 C 0.51 7.46 7.14 -10.98 -0.08 7.39 16 15 O -0.54 -10.01 15.89 5.56 0.09 -9.92 16 16 C -0.13 -1.29 2.61 -91.65 -0.24 -1.53 16 17 H 0.11 0.93 8.12 -51.93 -0.42 0.50 16 18 C -0.10 -1.01 4.71 -26.54 -0.13 -1.14 16 19 C -0.14 -1.20 6.04 -28.10 -0.17 -1.37 16 20 C 0.52 5.88 7.71 -11.87 -0.09 5.78 16 21 O -0.56 -8.55 17.78 5.56 0.10 -8.45 16 22 N -0.72 -6.63 5.45 -61.39 -0.33 -6.97 16 23 C 0.12 1.04 6.31 -4.49 -0.03 1.01 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 29 H 0.01 0.09 6.86 -51.92 -0.36 -0.26 16 30 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 5.39 5.78 -40.82 -0.24 5.15 16 34 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 35 H 0.09 0.91 7.88 -51.93 -0.41 0.51 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 3.30 8.80 -40.82 -0.36 2.94 16 39 H 0.09 0.64 7.84 -51.93 -0.41 0.23 16 40 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -29.70 318.46 -6.84 -36.54 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.10 Total: 4.93 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.60 Total: -2.52 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.11 Total: -40.49 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.19 Total: -18.37 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.70 -6.84 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315405784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.122 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds