Wall clock time and date at job start Mon Mar 30 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 C 1.50693 * 109.47403 * 239.99904 * 2 1 3 5 5 H 1.08000 * 120.00042 * 239.99835 * 4 2 1 6 6 C 1.37878 * 120.00088 * 60.00031 * 4 2 1 7 7 N 1.31513 * 119.99655 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00285 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47215 * 89.99690 * 8 6 4 10 10 H 1.48498 * 109.47104 * 209.99734 * 8 6 4 11 11 H 1.48506 * 109.46905 * 329.99788 * 8 6 4 12 12 C 1.53008 * 109.47183 * 119.99818 * 2 1 3 13 13 N 1.46498 * 109.46993 * 300.00010 * 12 2 1 14 14 C 1.34773 * 119.99949 * 179.97438 * 13 12 2 15 15 O 1.21275 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00167 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.73266 * 60.40609 * 16 14 13 18 18 C 1.53306 * 109.61286 * 180.91871 * 16 14 13 19 19 C 1.53068 * 108.45714 * 187.36029 * 18 16 14 20 20 C 1.50175 * 109.81907 * 310.98922 * 19 18 16 21 21 O 1.21279 * 118.24601 * 197.62393 * 20 19 18 22 22 N 1.33355 * 123.50957 * 17.60622 * 20 19 18 23 23 C 1.45747 * 124.10720 * 357.77554 * 22 20 19 24 24 H 1.09002 * 109.47190 * 299.99773 * 1 2 3 25 25 H 1.08997 * 109.47287 * 60.00587 * 1 2 3 26 26 H 1.09005 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47384 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47403 * 299.99750 * 3 2 1 29 29 H 1.09007 * 109.47703 * 60.00238 * 3 2 1 30 30 H 0.97006 * 119.99779 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46943 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46905 * 60.00429 * 12 2 1 33 33 H 0.97002 * 120.00342 * 0.02562 * 13 12 2 34 34 H 1.09001 * 109.71257 * 67.57860 * 18 16 14 35 35 H 1.09006 * 109.60363 * 307.06908 * 18 16 14 36 36 H 1.09002 * 109.40169 * 190.90432 * 19 18 16 37 37 H 1.09003 * 109.40095 * 71.07949 * 19 18 16 38 38 H 0.97002 * 117.94587 * 177.79323 * 22 20 19 39 39 H 1.08998 * 109.30193 * 139.40921 * 23 22 20 40 40 H 1.08997 * 109.30045 * 258.78542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4773 3.7809 16 6 1.3740 0.2188 4.9000 17 1 0.2841 0.2150 4.9076 18 6 1.9017 -0.4881 6.1539 19 6 1.2314 0.1360 7.3803 20 6 1.3270 1.6328 7.3064 21 8 1.1478 2.2703 8.3224 22 7 1.5989 2.2986 6.1834 23 6 1.8819 1.6613 4.9036 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7579 2.3565 34 1 2.9821 -0.3600 6.2210 35 1 1.6600 -1.5499 6.1041 36 1 1.7308 -0.2146 8.2836 37 1 0.1824 -0.1590 7.4090 38 1 1.6091 3.2678 6.2207 39 1 1.3893 2.2186 4.1068 40 1 2.9579 1.6648 4.7295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315405784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:58 Heat of formation + Delta-G solvation = -114.402186 kcal Electronic energy + Delta-G solvation = -20962.874998 eV Core-core repulsion = 17775.784556 eV Total energy + Delta-G solvation = -3187.090442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65729 -40.45848 -38.22599 -37.19623 -35.00687 -33.96886 -32.81400 -30.95253 -27.51811 -27.43874 -26.77140 -25.64670 -24.06206 -21.73220 -20.60116 -20.11349 -18.84840 -17.96393 -17.49591 -17.21724 -16.61922 -16.56035 -16.24172 -16.02937 -15.17568 -15.02390 -14.86888 -14.69638 -14.46584 -14.08377 -13.93966 -13.16881 -13.09369 -12.92191 -12.81148 -12.64720 -12.58047 -12.24050 -12.20608 -12.11994 -11.98097 -11.44324 -11.24328 -10.84953 -10.80250 -10.64278 -10.37445 -10.14757 -9.90464 -8.00720 -6.15813 1.43046 1.46986 1.54084 1.58344 1.65198 2.20938 2.37080 2.51091 3.23376 3.53849 3.56664 3.70032 3.76485 4.24940 4.27248 4.41207 4.49480 4.55416 4.57526 4.73632 4.77321 4.88633 5.03950 5.05798 5.10231 5.14264 5.21002 5.24279 5.40840 5.62762 5.70055 5.71691 5.79214 6.20450 6.26039 6.27041 6.46653 6.68995 6.89120 7.17199 7.33332 7.52121 8.97622 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.003819 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.562136 B = 7329.045151 C = 7677.484592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.147 3.853 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.583 6.583 16 C -0.117 4.117 17 H 0.131 0.869 18 C -0.099 4.099 19 C -0.126 4.126 20 C 0.516 3.484 21 O -0.606 6.606 22 N -0.706 5.706 23 C 0.120 3.880 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.408 0.592 39 H 0.109 0.891 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 2.637 13.599 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.358 5.358 14 C 0.303 3.697 15 O -0.463 6.463 16 C -0.138 4.138 17 H 0.149 0.851 18 C -0.137 4.137 19 C -0.166 4.166 20 C 0.305 3.695 21 O -0.489 6.489 22 N -0.357 5.357 23 C -0.005 4.005 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.245 0.755 39 H 0.127 0.873 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.269 2.138 13.989 14.208 hybrid contribution 0.229 0.094 -1.413 1.434 sum -1.040 2.232 12.577 12.815 Atomic orbital electron populations 1.21675 0.97111 0.98627 1.00486 1.18365 0.93230 0.93164 0.90318 1.21667 0.97949 0.97678 1.00551 1.21300 1.31592 1.12112 0.91693 0.93830 1.25404 0.95219 0.95563 1.00829 1.69901 1.37005 1.23241 1.23489 0.85832 0.78666 0.78522 0.80206 1.20657 1.20997 1.20112 1.21255 0.97101 0.95079 0.84233 1.46161 1.52580 1.31857 1.05248 1.20760 0.79724 0.84269 0.84978 1.90686 1.39869 1.28492 1.87293 1.21626 1.04178 0.95287 0.92720 0.85150 1.21429 1.00639 1.00815 0.90842 1.21673 1.05246 0.89058 1.00599 1.20667 0.74561 0.92024 0.82267 1.90745 1.53161 1.70058 1.34932 1.45364 1.70299 1.11170 1.08846 1.21392 1.01848 0.91646 0.85569 0.94039 0.92155 0.96443 0.96280 0.92215 0.93856 0.93128 0.94176 0.94353 0.75241 0.91343 0.89612 0.86994 0.86107 0.75547 0.87280 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.08 71.98 0.58 -4.39 16 2 C 0.05 2.13 0.50 -52.93 -0.03 2.10 16 3 C -0.12 -4.88 8.08 71.98 0.58 -4.30 16 4 C -0.53 -26.73 8.01 25.60 0.21 -26.52 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -46.16 9.35 21.45 0.20 -45.96 16 8 Si 0.94 41.41 29.54 68.60 2.03 43.43 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.15 5.64 4.50 86.38 0.39 6.03 16 13 N -0.71 -20.04 4.86 -463.06 -2.25 -22.29 16 14 C 0.52 13.91 7.14 87.66 0.63 14.54 16 15 O -0.58 -20.89 15.89 -3.01 -0.05 -20.94 16 16 C -0.12 -2.01 2.61 -11.46 -0.03 -2.04 16 17 H 0.13 1.70 8.12 -2.39 -0.02 1.68 16 18 C -0.10 -1.71 4.71 30.72 0.14 -1.57 16 19 C -0.13 -1.91 6.04 29.71 0.18 -1.73 16 20 C 0.52 10.52 7.71 87.71 0.68 11.19 16 21 O -0.61 -17.62 17.78 -3.03 -0.05 -17.68 16 22 N -0.71 -11.08 5.45 -467.34 -2.55 -13.63 16 23 C 0.12 1.70 6.31 86.50 0.55 2.25 16 24 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 25 H 0.06 2.82 6.07 -2.39 -0.01 2.80 16 26 H 0.02 0.70 8.14 -2.38 -0.02 0.69 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 2.77 6.07 -2.39 -0.01 2.75 16 29 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 30 H 0.26 12.92 8.31 -92.70 -0.77 12.15 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.41 9.55 5.78 -92.71 -0.54 9.02 16 34 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 35 H 0.09 1.59 7.88 -2.38 -0.02 1.57 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.41 5.64 8.80 -92.71 -0.82 4.83 16 39 H 0.11 1.12 7.84 -2.39 -0.02 1.10 16 40 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 Total: -1.00 -64.64 318.46 1.34 -63.30 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.30 Total: 16.25 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.31 Total: -2.49 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -4.60 Total: -81.88 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.10 Total: -38.62 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -64.64 1.34 -63.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315405784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.099 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds