Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46501 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00236 * 264.06403 * 4 3 2 6 6 H 1.07998 * 119.99804 * 144.13232 * 5 4 3 7 7 C 1.38956 * 119.99547 * 324.13349 * 5 4 3 8 8 N 1.31410 * 119.99450 * 156.75060 * 7 5 4 9 9 Si 1.86794 * 119.99946 * 336.74587 * 7 5 4 10 10 H 1.48500 * 109.47328 * 93.51226 * 9 7 5 11 11 H 1.48507 * 109.46982 * 213.50666 * 9 7 5 12 12 H 1.48495 * 109.47479 * 333.50749 * 9 7 5 13 13 C 1.34778 * 119.99969 * 84.06249 * 4 3 2 14 14 O 1.21294 * 119.99679 * 4.57417 * 13 4 3 15 15 C 1.50700 * 120.00047 * 184.57041 * 13 4 3 16 16 H 1.08996 * 109.67360 * 328.38841 * 15 13 4 17 17 C 1.53073 * 109.67092 * 88.91864 * 15 13 4 18 18 C 1.50172 * 109.88815 * 168.63558 * 17 15 13 19 19 O 1.21284 * 118.24749 * 162.44302 * 18 17 15 20 20 N 1.32958 * 123.39710 * 342.46573 * 18 17 15 21 21 C 1.45755 * 124.40794 * 2.12979 * 20 18 17 22 22 H 1.09002 * 109.30544 * 101.24345 * 21 20 18 23 23 C 1.53001 * 109.29737 * 220.82255 * 21 20 18 24 24 C 1.52919 * 110.32057 * 341.02726 * 21 20 18 25 25 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46710 * 299.99786 * 1 2 3 27 27 H 1.09000 * 109.46963 * 59.99946 * 1 2 3 28 28 H 1.09009 * 109.46886 * 240.00434 * 2 1 3 29 29 H 1.08994 * 109.47495 * 120.00489 * 2 1 3 30 30 H 1.08996 * 109.47240 * 60.00538 * 3 2 1 31 31 H 1.09000 * 109.47332 * 299.99828 * 3 2 1 32 32 H 0.96999 * 119.99668 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.40130 * 288.76208 * 17 15 13 34 34 H 1.08997 * 109.40326 * 48.50574 * 17 15 13 35 35 H 0.97003 * 117.64574 * 182.12737 * 20 18 17 36 36 H 1.08999 * 109.46994 * 180.41552 * 23 21 20 37 37 H 1.09007 * 109.47155 * 300.41342 * 23 21 20 38 38 H 1.09002 * 109.47443 * 60.41547 * 23 21 20 39 39 H 1.09000 * 109.60208 * 170.41025 * 24 21 20 40 40 H 1.08995 * 109.60580 * 290.89764 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1911 1.5652 1.1800 6 1 5.1175 1.0293 1.3244 7 6 3.6943 2.3790 2.1909 8 7 4.0515 2.1697 3.4380 9 14 2.5188 3.7704 1.7768 10 1 1.1192 3.2938 1.9150 11 1 2.7490 4.9058 2.7059 12 1 2.7537 4.2180 0.3805 13 6 4.1784 1.3220 -1.1619 14 8 3.5743 1.2970 -2.2134 15 6 5.6818 1.2184 -1.1539 16 1 6.0842 1.7843 -0.3137 17 6 6.0965 -0.2501 -1.0326 18 6 7.5675 -0.3894 -1.3009 19 8 8.1235 -1.4045 -0.9383 20 7 8.2910 0.5422 -1.9144 21 6 7.7693 1.8270 -2.3635 22 1 8.0552 2.6009 -1.6511 23 6 8.3586 2.1603 -3.7356 24 6 6.2446 1.7740 -2.4676 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7044 2.7375 4.1437 33 1 5.8766 -0.6066 -0.0263 34 1 5.5386 -0.8448 -1.7560 35 1 9.2289 0.3520 -2.0727 36 1 7.9760 3.1242 -4.0709 37 1 9.4453 2.2060 -3.6629 38 1 8.0745 1.3880 -4.4504 39 1 5.8546 2.7777 -2.6370 40 1 5.9568 1.1231 -3.2931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330771653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -82.558980 kcal Electronic energy + Delta-G solvation = -21693.327062 eV Core-core repulsion = 18507.617445 eV Total energy + Delta-G solvation = -3185.709617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34011 -38.80218 -36.57917 -35.33577 -33.34203 -32.58638 -31.60629 -30.94467 -26.98175 -26.35241 -25.09939 -23.18965 -22.14730 -21.13109 -19.14038 -18.79583 -17.22620 -16.76540 -16.36871 -15.92837 -15.38833 -14.97328 -14.45611 -14.16504 -14.02932 -13.74597 -13.35837 -13.16992 -12.94065 -12.72712 -12.45510 -12.36085 -12.05796 -11.68904 -11.54394 -11.35391 -11.22427 -11.03624 -10.85112 -10.60050 -10.51518 -10.42893 -10.06485 -9.81318 -9.70958 -9.21103 -8.93638 -8.55462 -7.88164 -6.57244 -4.13878 2.92875 2.98364 3.15819 3.23414 3.44870 3.60641 4.04572 4.20336 4.77468 4.80044 4.87718 5.06232 5.22387 5.35393 5.46425 5.54154 5.58067 5.60702 5.69897 5.82356 5.83315 5.97559 6.00439 6.14585 6.15889 6.18126 6.31739 6.34180 6.38048 6.40334 6.61056 6.72329 6.85859 6.96102 7.28706 7.54210 7.98440 8.16081 8.46220 8.86006 9.26921 9.60163 10.52900 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.006569 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.563208 B = 4261.483583 C = 4541.228814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.459 5.459 5 C -0.351 4.351 6 H 0.107 0.893 7 C 0.070 3.930 8 N -0.852 5.852 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.484 3.516 14 O -0.597 6.597 15 C -0.098 4.098 16 H 0.108 0.892 17 C -0.120 4.120 18 C 0.529 3.471 19 O -0.566 6.566 20 N -0.715 5.715 21 C 0.135 3.865 22 H 0.077 0.923 23 C -0.162 4.162 24 C -0.110 4.110 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.276 0.724 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 1.576 -8.664 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.022 4.022 4 N -0.178 5.178 5 C -0.477 4.477 6 H 0.124 0.876 7 C -0.139 4.139 8 N -0.486 5.486 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.273 3.727 14 O -0.482 6.482 15 C -0.119 4.119 16 H 0.126 0.874 17 C -0.160 4.160 18 C 0.317 3.683 19 O -0.445 6.445 20 N -0.367 5.367 21 C 0.030 3.970 22 H 0.095 0.905 23 C -0.220 4.220 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.423 1.157 -8.703 9.108 hybrid contribution -0.278 0.832 0.117 0.885 sum 2.145 1.989 -8.586 9.071 Atomic orbital electron populations 1.21704 0.96308 1.01114 1.01376 1.21769 0.94907 0.97859 1.02486 1.21685 0.82496 0.96817 1.01252 1.43785 1.03988 1.63716 1.06283 1.19081 1.09528 1.29000 0.90116 0.87594 1.25312 0.96887 0.97090 0.94583 1.69791 1.43061 1.36646 0.99145 0.87032 0.80787 0.82547 0.79556 1.20010 1.21451 1.18545 1.20085 0.88759 0.80540 0.83347 1.90542 1.70225 1.56190 1.31289 1.21177 0.94735 0.96424 0.99556 0.87409 1.21518 0.91419 0.97430 1.05623 1.20094 0.89965 0.82242 0.76002 1.90726 1.72161 1.29258 1.52402 1.45547 1.13526 1.17608 1.59988 1.21046 0.94944 0.84976 0.95987 0.90474 1.22149 1.00860 1.02657 0.96302 1.21763 0.91901 1.03249 0.97908 0.92977 0.92992 0.93037 0.92006 0.91274 0.91265 0.91651 0.91370 0.87286 0.88420 0.77189 0.90858 0.92262 0.91922 0.89743 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.92 16 2 C -0.13 -2.49 6.21 -26.73 -0.17 -2.66 16 3 C 0.10 2.16 4.00 -4.04 -0.02 2.14 16 4 N -0.46 -10.47 2.22 -114.81 -0.25 -10.73 16 5 C -0.35 -8.62 8.75 -14.93 -0.13 -8.75 16 6 H 0.11 2.71 6.56 -52.49 -0.34 2.37 16 7 C 0.07 1.76 5.26 -17.47 -0.09 1.67 16 8 N -0.85 -22.68 13.96 55.50 0.77 -21.91 16 9 Si 0.87 19.71 25.11 -169.99 -4.27 15.44 16 10 H -0.27 -5.95 6.57 56.52 0.37 -5.58 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 13 C 0.48 10.44 6.65 -10.98 -0.07 10.36 16 14 O -0.60 -13.87 15.96 5.55 0.09 -13.78 16 15 C -0.10 -1.75 1.81 -91.56 -0.17 -1.92 16 16 H 0.11 2.03 6.70 -51.93 -0.35 1.68 16 17 C -0.12 -2.10 5.31 -28.10 -0.15 -2.25 16 18 C 0.53 9.04 7.71 -12.05 -0.09 8.94 16 19 O -0.57 -11.55 17.78 5.55 0.10 -11.45 16 20 N -0.71 -9.60 5.10 -54.95 -0.28 -9.88 16 21 C 0.14 1.60 3.68 -68.37 -0.25 1.34 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.16 -1.45 9.40 37.16 0.35 -1.10 16 24 C -0.11 -1.61 4.05 -26.60 -0.11 -1.72 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.53 3.38 -51.93 -0.18 1.36 16 31 H 0.07 1.40 7.54 -51.93 -0.39 1.01 16 32 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.11 2.06 7.61 -51.93 -0.40 1.66 16 34 H 0.10 1.69 8.09 -51.93 -0.42 1.27 16 35 H 0.39 4.62 8.65 -40.82 -0.35 4.26 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -29.59 319.96 -5.78 -35.38 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.24 Total: 7.97 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.53 Total: 4.14 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.24 Total: -42.52 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.19 Total: -25.23 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.27 Total: 15.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.59 -5.78 -35.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330771653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.183 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds