Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46501 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00236 * 264.06403 * 4 3 2 6 6 H 1.07998 * 119.99804 * 144.13232 * 5 4 3 7 7 C 1.38956 * 119.99547 * 324.13349 * 5 4 3 8 8 N 1.31410 * 119.99450 * 156.75060 * 7 5 4 9 9 Si 1.86794 * 119.99946 * 336.74587 * 7 5 4 10 10 H 1.48500 * 109.47328 * 93.51226 * 9 7 5 11 11 H 1.48507 * 109.46982 * 213.50666 * 9 7 5 12 12 H 1.48495 * 109.47479 * 333.50749 * 9 7 5 13 13 C 1.34778 * 119.99969 * 84.06249 * 4 3 2 14 14 O 1.21294 * 119.99679 * 4.57417 * 13 4 3 15 15 C 1.50700 * 120.00047 * 184.57041 * 13 4 3 16 16 H 1.08996 * 109.67360 * 328.38841 * 15 13 4 17 17 C 1.53073 * 109.67092 * 88.91864 * 15 13 4 18 18 C 1.50172 * 109.88815 * 168.63558 * 17 15 13 19 19 O 1.21284 * 118.24749 * 162.44302 * 18 17 15 20 20 N 1.32958 * 123.39710 * 342.46573 * 18 17 15 21 21 C 1.45755 * 124.40794 * 2.12979 * 20 18 17 22 22 H 1.09002 * 109.30544 * 101.24345 * 21 20 18 23 23 C 1.53001 * 109.29737 * 220.82255 * 21 20 18 24 24 C 1.52919 * 110.32057 * 341.02726 * 21 20 18 25 25 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46710 * 299.99786 * 1 2 3 27 27 H 1.09000 * 109.46963 * 59.99946 * 1 2 3 28 28 H 1.09009 * 109.46886 * 240.00434 * 2 1 3 29 29 H 1.08994 * 109.47495 * 120.00489 * 2 1 3 30 30 H 1.08996 * 109.47240 * 60.00538 * 3 2 1 31 31 H 1.09000 * 109.47332 * 299.99828 * 3 2 1 32 32 H 0.96999 * 119.99668 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.40130 * 288.76208 * 17 15 13 34 34 H 1.08997 * 109.40326 * 48.50574 * 17 15 13 35 35 H 0.97003 * 117.64574 * 182.12737 * 20 18 17 36 36 H 1.08999 * 109.46994 * 180.41552 * 23 21 20 37 37 H 1.09007 * 109.47155 * 300.41342 * 23 21 20 38 38 H 1.09002 * 109.47443 * 60.41547 * 23 21 20 39 39 H 1.09000 * 109.60208 * 170.41025 * 24 21 20 40 40 H 1.08995 * 109.60580 * 290.89764 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1911 1.5652 1.1800 6 1 5.1175 1.0293 1.3244 7 6 3.6943 2.3790 2.1909 8 7 4.0515 2.1697 3.4380 9 14 2.5188 3.7704 1.7768 10 1 1.1192 3.2938 1.9150 11 1 2.7490 4.9058 2.7059 12 1 2.7537 4.2180 0.3805 13 6 4.1784 1.3220 -1.1619 14 8 3.5743 1.2970 -2.2134 15 6 5.6818 1.2184 -1.1539 16 1 6.0842 1.7843 -0.3137 17 6 6.0965 -0.2501 -1.0326 18 6 7.5675 -0.3894 -1.3009 19 8 8.1235 -1.4045 -0.9383 20 7 8.2910 0.5422 -1.9144 21 6 7.7693 1.8270 -2.3635 22 1 8.0552 2.6009 -1.6511 23 6 8.3586 2.1603 -3.7356 24 6 6.2446 1.7740 -2.4676 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7044 2.7375 4.1437 33 1 5.8766 -0.6066 -0.0263 34 1 5.5386 -0.8448 -1.7560 35 1 9.2289 0.3520 -2.0727 36 1 7.9760 3.1242 -4.0709 37 1 9.4453 2.2060 -3.6629 38 1 8.0745 1.3880 -4.4504 39 1 5.8546 2.7777 -2.6370 40 1 5.9568 1.1231 -3.2931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330771653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -102.211952 kcal Electronic energy + Delta-G solvation = -21694.179279 eV Core-core repulsion = 18507.617445 eV Total energy + Delta-G solvation = -3186.561833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76150 -40.45943 -37.93180 -37.04648 -34.92709 -34.18360 -33.31776 -32.07547 -28.20909 -27.82868 -26.95916 -24.61376 -23.28667 -22.65856 -20.84978 -20.20818 -18.80734 -18.16939 -18.09594 -17.25224 -17.15061 -16.39686 -15.97723 -15.70643 -15.55141 -15.26604 -14.85372 -14.68516 -14.32574 -14.14822 -14.01821 -13.55996 -13.31747 -13.15289 -13.05941 -12.59446 -12.52918 -12.49150 -12.35045 -12.19344 -11.95507 -11.82938 -11.79062 -11.51433 -11.24593 -10.97829 -10.30342 -10.11310 -9.74562 -8.52834 -6.11036 1.18114 1.31838 1.42488 1.54173 1.82625 2.17030 2.30022 2.54782 2.94456 3.54810 3.73947 3.78403 3.85041 3.97810 4.15610 4.24095 4.26883 4.35837 4.39549 4.52606 4.58323 4.69305 4.71995 4.74577 4.91983 4.96451 4.98143 5.08847 5.09869 5.22235 5.24694 5.30274 5.38250 5.48991 5.84614 6.05143 6.25392 6.27814 6.94025 7.17045 7.40908 7.76772 8.60913 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.006569 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.563208 B = 4261.483583 C = 4541.228814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.093 3.907 4 N -0.471 5.471 5 C -0.344 4.344 6 H 0.086 0.914 7 C 0.033 3.967 8 N -0.891 5.891 9 Si 0.922 3.078 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.482 3.518 14 O -0.611 6.611 15 C -0.093 4.093 16 H 0.098 0.902 17 C -0.113 4.113 18 C 0.531 3.469 19 O -0.604 6.604 20 N -0.698 5.698 21 C 0.137 3.863 22 H 0.091 0.909 23 C -0.155 4.155 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.280 0.720 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.406 0.594 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 2.634 -10.185 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.029 4.029 4 N -0.191 5.191 5 C -0.471 4.471 6 H 0.104 0.896 7 C -0.172 4.172 8 N -0.527 5.527 9 Si 0.748 3.252 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.272 3.728 14 O -0.497 6.497 15 C -0.114 4.114 16 H 0.116 0.884 17 C -0.154 4.154 18 C 0.319 3.681 19 O -0.487 6.487 20 N -0.349 5.349 21 C 0.033 3.967 22 H 0.109 0.891 23 C -0.212 4.212 24 C -0.144 4.144 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.391 2.245 -10.252 10.764 hybrid contribution -0.253 0.488 0.532 0.765 sum 2.138 2.733 -9.720 10.321 Atomic orbital electron populations 1.21676 0.93329 1.02835 1.02070 1.21704 0.97507 0.95899 1.01345 1.21816 0.81835 0.98378 1.00888 1.43920 1.04715 1.64332 1.06090 1.18939 1.09054 1.28472 0.90675 0.89596 1.25811 0.98453 0.98633 0.94315 1.69855 1.45006 1.37853 0.99984 0.86245 0.79972 0.80156 0.78838 1.18510 1.21126 1.19057 1.20660 0.90200 0.79214 0.82699 1.90523 1.71026 1.56569 1.31603 1.21161 0.92316 0.96664 1.01285 0.88426 1.21380 0.92394 0.97114 1.04471 1.19883 0.89589 0.82428 0.76243 1.90711 1.72614 1.30985 1.54362 1.45460 1.13903 1.17314 1.58185 1.21211 0.92968 0.84142 0.98394 0.89121 1.22111 1.02044 1.03262 0.93810 1.21769 0.93923 1.03124 0.95539 0.90819 0.92640 0.91972 0.92760 0.92733 0.91831 0.91550 0.91021 0.89380 0.88325 0.75685 0.89394 0.90186 0.92118 0.89207 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -4.71 6.21 30.60 0.19 -4.52 16 3 C 0.09 3.96 4.00 86.38 0.35 4.31 16 4 N -0.47 -21.62 2.22 -635.53 -1.41 -23.03 16 5 C -0.34 -17.25 8.75 84.04 0.74 -16.51 16 6 H 0.09 4.58 6.56 -2.91 -0.02 4.56 16 7 C 0.03 1.68 5.26 84.93 0.45 2.12 16 8 N -0.89 -48.09 13.96 21.66 0.30 -47.79 16 9 Si 0.92 40.23 25.11 68.60 1.72 41.95 16 10 H -0.26 -10.65 6.57 99.48 0.65 -9.99 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.48 20.79 6.65 87.66 0.58 21.37 16 14 O -0.61 -28.01 15.96 -3.07 -0.05 -28.06 16 15 C -0.09 -3.33 1.81 -11.40 -0.02 -3.35 16 16 H 0.10 3.71 6.70 -2.39 -0.02 3.69 16 17 C -0.11 -4.04 5.31 29.71 0.16 -3.88 16 18 C 0.53 17.98 7.71 87.77 0.68 18.65 16 19 O -0.60 -24.78 17.78 -3.04 -0.05 -24.84 16 20 N -0.70 -17.48 5.10 -447.16 -2.28 -19.76 16 21 C 0.14 2.87 3.68 45.11 0.17 3.04 16 22 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 23 C -0.15 -2.21 9.40 71.98 0.68 -1.53 16 24 C -0.11 -2.92 4.05 30.68 0.12 -2.79 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 2.75 3.38 -2.39 -0.01 2.74 16 31 H 0.07 2.78 7.54 -2.39 -0.02 2.76 16 32 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.09 3.50 7.61 -2.39 -0.02 3.48 16 34 H 0.10 3.46 8.09 -2.39 -0.02 3.44 16 35 H 0.41 8.58 8.65 -92.71 -0.80 7.78 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -63.65 319.96 3.21 -60.44 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.18 Total: 27.56 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.79 Total: 13.52 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.39 Total: -90.58 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.10 Total: -52.89 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.72 Total: 41.95 kcal Total: -63.65 3.21 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330771653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.768 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds