Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 N 1.46499 * 109.47253 * 174.56201 * 3 2 1 5 5 C 1.37098 * 120.00196 * 265.32117 * 4 3 2 6 6 H 1.08003 * 120.00507 * 191.27832 * 5 4 3 7 7 C 1.38955 * 119.99816 * 11.27735 * 5 4 3 8 8 N 1.31411 * 119.99725 * 31.31144 * 7 5 4 9 9 Si 1.86799 * 120.00070 * 211.30863 * 7 5 4 10 10 H 1.48497 * 109.46900 * 90.00150 * 9 7 5 11 11 H 1.48502 * 109.47117 * 210.00132 * 9 7 5 12 12 H 1.48500 * 109.47241 * 330.00163 * 9 7 5 13 13 C 1.34782 * 120.00115 * 85.32188 * 4 3 2 14 14 O 1.21289 * 119.99683 * 5.05241 * 13 4 3 15 15 C 1.50696 * 120.00096 * 185.05513 * 13 4 3 16 16 H 1.09007 * 109.70136 * 20.73538 * 15 13 4 17 17 C 1.53371 * 109.91496 * 260.18262 * 15 13 4 18 18 C 1.50174 * 109.99403 * 191.47070 * 17 15 13 19 19 O 1.21283 * 118.25145 * 197.57240 * 18 17 15 20 20 N 1.33352 * 123.50513 * 17.54719 * 18 17 15 21 21 C 1.45757 * 124.10970 * 357.75534 * 20 18 17 22 22 H 1.09001 * 109.30287 * 258.78397 * 21 20 18 23 23 C 1.52999 * 109.13422 * 139.29697 * 21 20 18 24 24 C 1.52923 * 110.48394 * 19.09433 * 21 20 18 25 25 H 1.08998 * 109.46864 * 299.99771 * 1 2 3 26 26 H 1.08990 * 109.47006 * 60.00015 * 1 2 3 27 27 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47194 * 240.00052 * 2 1 3 29 29 H 1.09003 * 109.47343 * 120.00099 * 2 1 3 30 30 H 1.08998 * 109.47403 * 54.56334 * 3 2 1 31 31 H 1.08999 * 109.47313 * 294.56453 * 3 2 1 32 32 H 0.97004 * 119.99866 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.37827 * 71.29689 * 17 15 13 34 34 H 1.08998 * 109.25671 * 311.57286 * 17 15 13 35 35 H 0.97005 * 117.94749 * 177.77580 * 20 18 17 36 36 H 1.08999 * 109.47421 * 299.06990 * 23 21 20 37 37 H 1.09002 * 109.47289 * 59.07535 * 23 21 20 38 38 H 1.09010 * 109.46775 * 179.06784 * 23 21 20 39 39 H 1.09002 * 109.60465 * 69.00832 * 24 21 20 40 40 H 1.09001 * 109.60266 * 189.32597 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4445 0.1309 5 6 4.0764 1.5797 1.3671 6 1 5.1373 1.7639 1.4506 7 6 3.2964 1.4796 2.5127 8 7 2.2397 0.6984 2.5219 9 14 3.7499 2.4553 4.0397 10 1 3.0787 3.7793 3.9985 11 1 3.3100 1.7146 5.2492 12 1 5.2217 2.6477 4.0851 13 6 4.2742 1.3136 -0.9640 14 8 3.7677 1.2862 -2.0657 15 6 5.7700 1.2011 -0.8193 16 1 6.0181 0.8786 0.1920 17 6 6.4256 2.5587 -1.1012 18 6 7.9123 2.3932 -1.2340 19 8 8.6109 3.3796 -1.1343 20 7 8.5055 1.2196 -1.4553 21 6 7.7959 -0.0502 -1.5488 22 1 7.9012 -0.5919 -0.6088 23 6 8.4015 -0.8809 -2.6819 24 6 6.3118 0.1858 -1.8325 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5994 1.9836 0.8373 31 1 1.7584 1.9274 -0.9346 32 1 1.6954 0.6282 3.3218 33 1 6.2093 3.2422 -0.2802 34 1 6.0225 2.9670 -2.0280 35 1 9.4698 1.2102 -1.5602 36 1 8.2910 -0.3449 -3.6245 37 1 9.4596 -1.0508 -2.4824 38 1 7.8855 -1.8389 -2.7459 39 1 6.1903 0.5768 -2.8428 40 1 5.7672 -0.7535 -1.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330771654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -80.788567 kcal Electronic energy + Delta-G solvation = -21679.098340 eV Core-core repulsion = 18493.465494 eV Total energy + Delta-G solvation = -3185.632846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25242 -38.56370 -36.53666 -35.22255 -33.01477 -32.14157 -31.40045 -30.90512 -26.95958 -26.09619 -24.95969 -23.02767 -22.10278 -20.50752 -19.15890 -18.84341 -17.15691 -16.70137 -16.24732 -15.91575 -14.93940 -14.56655 -14.35253 -14.26238 -13.82478 -13.53865 -13.22941 -13.02133 -12.83456 -12.59261 -12.16078 -12.11625 -11.81074 -11.40193 -11.32069 -11.23797 -10.99705 -10.86744 -10.71308 -10.46259 -10.41982 -10.31592 -10.12943 -9.68017 -9.43124 -8.98046 -8.93048 -8.35062 -7.85242 -6.49581 -3.92490 2.91277 3.06210 3.19678 3.21643 3.46359 3.76309 4.01943 4.52213 4.81430 4.86652 4.90184 5.13657 5.26856 5.42935 5.51057 5.62937 5.73388 5.87471 5.99669 6.02549 6.11812 6.16501 6.18070 6.25485 6.39153 6.43208 6.60292 6.63875 6.84231 6.88825 6.96430 6.97270 7.28291 7.33391 7.53272 7.64132 7.79435 8.35213 8.44878 9.00089 9.45794 9.87076 10.46865 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.006883 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.919418 B = 4067.265946 C = 5008.212876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.143 3.857 4 N -0.432 5.432 5 C -0.352 4.352 6 H 0.101 0.899 7 C 0.048 3.952 8 N -0.837 5.837 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.610 6.610 15 C -0.097 4.097 16 H 0.100 0.900 17 C -0.121 4.121 18 C 0.528 3.472 19 O -0.568 6.568 20 N -0.716 5.716 21 C 0.135 3.865 22 H 0.076 0.924 23 C -0.162 4.162 24 C -0.109 4.109 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.270 0.730 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.393 0.607 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -3.925 -3.471 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.019 3.981 4 N -0.148 5.148 5 C -0.478 4.478 6 H 0.119 0.881 7 C -0.159 4.159 8 N -0.473 5.473 9 Si 0.731 3.269 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.498 6.498 15 C -0.119 4.119 16 H 0.118 0.882 17 C -0.161 4.161 18 C 0.316 3.684 19 O -0.447 6.447 20 N -0.369 5.369 21 C 0.031 3.969 22 H 0.094 0.906 23 C -0.220 4.220 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.135 -3.491 -3.752 7.255 hybrid contribution 0.441 0.296 0.951 1.090 sum 5.576 -3.195 -2.801 7.011 Atomic orbital electron populations 1.21567 0.97568 0.99845 1.00256 1.21907 0.93893 0.98247 1.02535 1.21084 0.80572 0.97047 0.99357 1.43836 1.05121 1.60088 1.05787 1.19583 0.95542 1.50816 0.81881 0.88124 1.25137 0.96313 0.95530 0.98944 1.70145 1.17592 1.29874 1.29658 0.86294 0.79392 0.80425 0.80831 1.20207 1.21078 1.19324 1.19706 0.87901 0.83371 0.84500 1.90525 1.75302 1.57956 1.26011 1.21247 0.94656 0.94693 1.01262 0.88221 1.21588 0.89962 0.99119 1.05409 1.20283 0.91344 0.82284 0.74471 1.90714 1.64905 1.37314 1.51787 1.45651 1.10917 1.07093 1.73192 1.21047 0.92901 0.83935 0.99050 0.90591 1.22154 1.00840 1.00443 0.98556 1.21735 0.92339 1.00467 1.00179 0.93034 0.94594 0.94205 0.94966 0.87405 0.90507 0.93951 0.91981 0.87713 0.88075 0.77192 0.91912 0.92317 0.90847 0.90435 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.13 -2.79 5.65 -26.73 -0.15 -2.94 16 3 C 0.14 3.32 4.59 -4.05 -0.02 3.31 16 4 N -0.43 -10.29 2.63 -114.81 -0.30 -10.60 16 5 C -0.35 -8.34 8.92 -14.93 -0.13 -8.47 16 6 H 0.10 2.29 6.15 -52.48 -0.32 1.97 16 7 C 0.05 1.13 4.65 -17.47 -0.08 1.05 16 8 N -0.84 -19.88 8.89 55.50 0.49 -19.38 16 9 Si 0.90 18.60 29.65 -169.99 -5.04 13.56 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.46 10.35 6.56 -10.98 -0.07 10.28 16 14 O -0.61 -15.26 16.15 5.55 0.09 -15.17 16 15 C -0.10 -1.78 1.95 -91.41 -0.18 -1.96 16 16 H 0.10 1.87 6.09 -51.93 -0.32 1.55 16 17 C -0.12 -2.13 5.36 -27.95 -0.15 -2.28 16 18 C 0.53 9.00 7.72 -11.87 -0.09 8.91 16 19 O -0.57 -11.47 17.78 5.55 0.10 -11.37 16 20 N -0.72 -9.68 5.12 -54.85 -0.28 -9.96 16 21 C 0.14 1.63 3.68 -68.37 -0.25 1.38 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.16 -1.51 9.38 37.16 0.35 -1.16 16 24 C -0.11 -1.66 4.19 -26.60 -0.11 -1.77 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 2.58 5.93 -51.93 -0.31 2.27 16 30 H 0.08 1.84 6.38 -51.93 -0.33 1.51 16 31 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 32 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 33 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.10 1.81 8.10 -51.93 -0.42 1.39 16 35 H 0.39 4.62 8.66 -40.82 -0.35 4.27 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -28.34 320.72 -6.85 -35.19 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.22 Total: 8.66 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.52 Total: 4.23 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.19 Total: -26.54 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.04 Total: 13.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.34 -6.85 -35.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330771654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.600 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds