Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 N 1.46499 * 109.47253 * 174.56201 * 3 2 1 5 5 C 1.37098 * 120.00196 * 265.32117 * 4 3 2 6 6 H 1.08003 * 120.00507 * 191.27832 * 5 4 3 7 7 C 1.38955 * 119.99816 * 11.27735 * 5 4 3 8 8 N 1.31411 * 119.99725 * 31.31144 * 7 5 4 9 9 Si 1.86799 * 120.00070 * 211.30863 * 7 5 4 10 10 H 1.48497 * 109.46900 * 90.00150 * 9 7 5 11 11 H 1.48502 * 109.47117 * 210.00132 * 9 7 5 12 12 H 1.48500 * 109.47241 * 330.00163 * 9 7 5 13 13 C 1.34782 * 120.00115 * 85.32188 * 4 3 2 14 14 O 1.21289 * 119.99683 * 5.05241 * 13 4 3 15 15 C 1.50696 * 120.00096 * 185.05513 * 13 4 3 16 16 H 1.09007 * 109.70136 * 20.73538 * 15 13 4 17 17 C 1.53371 * 109.91496 * 260.18262 * 15 13 4 18 18 C 1.50174 * 109.99403 * 191.47070 * 17 15 13 19 19 O 1.21283 * 118.25145 * 197.57240 * 18 17 15 20 20 N 1.33352 * 123.50513 * 17.54719 * 18 17 15 21 21 C 1.45757 * 124.10970 * 357.75534 * 20 18 17 22 22 H 1.09001 * 109.30287 * 258.78397 * 21 20 18 23 23 C 1.52999 * 109.13422 * 139.29697 * 21 20 18 24 24 C 1.52923 * 110.48394 * 19.09433 * 21 20 18 25 25 H 1.08998 * 109.46864 * 299.99771 * 1 2 3 26 26 H 1.08990 * 109.47006 * 60.00015 * 1 2 3 27 27 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47194 * 240.00052 * 2 1 3 29 29 H 1.09003 * 109.47343 * 120.00099 * 2 1 3 30 30 H 1.08998 * 109.47403 * 54.56334 * 3 2 1 31 31 H 1.08999 * 109.47313 * 294.56453 * 3 2 1 32 32 H 0.97004 * 119.99866 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.37827 * 71.29689 * 17 15 13 34 34 H 1.08998 * 109.25671 * 311.57286 * 17 15 13 35 35 H 0.97005 * 117.94749 * 177.77580 * 20 18 17 36 36 H 1.08999 * 109.47421 * 299.06990 * 23 21 20 37 37 H 1.09002 * 109.47289 * 59.07535 * 23 21 20 38 38 H 1.09010 * 109.46775 * 179.06784 * 23 21 20 39 39 H 1.09002 * 109.60465 * 69.00832 * 24 21 20 40 40 H 1.09001 * 109.60266 * 189.32597 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4445 0.1309 5 6 4.0764 1.5797 1.3671 6 1 5.1373 1.7639 1.4506 7 6 3.2964 1.4796 2.5127 8 7 2.2397 0.6984 2.5219 9 14 3.7499 2.4553 4.0397 10 1 3.0787 3.7793 3.9985 11 1 3.3100 1.7146 5.2492 12 1 5.2217 2.6477 4.0851 13 6 4.2742 1.3136 -0.9640 14 8 3.7677 1.2862 -2.0657 15 6 5.7700 1.2011 -0.8193 16 1 6.0181 0.8786 0.1920 17 6 6.4256 2.5587 -1.1012 18 6 7.9123 2.3932 -1.2340 19 8 8.6109 3.3796 -1.1343 20 7 8.5055 1.2196 -1.4553 21 6 7.7959 -0.0502 -1.5488 22 1 7.9012 -0.5919 -0.6088 23 6 8.4015 -0.8809 -2.6819 24 6 6.3118 0.1858 -1.8325 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5994 1.9836 0.8373 31 1 1.7584 1.9274 -0.9346 32 1 1.6954 0.6282 3.3218 33 1 6.2093 3.2422 -0.2802 34 1 6.0225 2.9670 -2.0280 35 1 9.4698 1.2102 -1.5602 36 1 8.2910 -0.3449 -3.6245 37 1 9.4596 -1.0508 -2.4824 38 1 7.8855 -1.8389 -2.7459 39 1 6.1903 0.5768 -2.8428 40 1 5.7672 -0.7535 -1.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330771654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -98.162427 kcal Electronic energy + Delta-G solvation = -21679.851727 eV Core-core repulsion = 18493.465494 eV Total energy + Delta-G solvation = -3186.386233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65611 -40.27158 -37.89293 -36.99328 -34.56134 -33.82415 -33.15316 -32.04202 -28.19012 -27.74786 -26.70670 -24.51710 -23.25052 -22.22693 -20.92217 -20.20522 -18.68392 -18.15380 -17.97157 -17.22633 -16.40313 -16.30415 -15.95475 -15.70875 -15.41078 -15.15088 -14.71113 -14.56580 -14.18010 -13.83592 -13.63253 -13.55174 -13.10105 -13.04828 -12.66452 -12.59629 -12.52705 -12.39226 -12.30759 -12.07711 -12.06331 -11.75686 -11.71211 -11.24622 -11.14259 -10.80811 -10.14922 -10.08864 -9.70666 -8.29930 -5.78599 1.39579 1.51700 1.54658 1.58693 1.98672 2.29276 2.31412 2.90881 3.06124 3.59677 3.77512 3.84359 3.90319 4.24615 4.27881 4.35655 4.39492 4.51663 4.63913 4.70072 4.72163 4.75205 4.89478 4.96369 4.98184 5.04694 5.08856 5.20771 5.25726 5.29783 5.37383 5.47510 5.56289 5.82064 5.85949 5.95621 6.27415 6.51407 7.16251 7.17518 7.63230 8.04885 8.66710 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.006883 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.919418 B = 4067.265946 C = 5008.212876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.144 3.856 4 N -0.444 5.444 5 C -0.371 4.371 6 H 0.106 0.894 7 C 0.017 3.983 8 N -0.852 5.852 9 Si 0.965 3.035 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.447 3.553 14 O -0.639 6.639 15 C -0.089 4.089 16 H 0.097 0.903 17 C -0.115 4.115 18 C 0.532 3.468 19 O -0.602 6.602 20 N -0.699 5.699 21 C 0.139 3.861 22 H 0.093 0.907 23 C -0.156 4.156 24 C -0.105 4.105 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.273 0.727 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -4.909 -3.098 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C 0.021 3.979 4 N -0.160 5.160 5 C -0.497 4.497 6 H 0.124 0.876 7 C -0.190 4.190 8 N -0.488 5.488 9 Si 0.790 3.210 10 H -0.207 1.207 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.237 3.763 14 O -0.529 6.529 15 C -0.110 4.110 16 H 0.115 0.885 17 C -0.156 4.156 18 C 0.319 3.681 19 O -0.485 6.485 20 N -0.351 5.351 21 C 0.035 3.965 22 H 0.110 0.890 23 C -0.213 4.213 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.244 0.756 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.224 -4.520 -3.379 8.402 hybrid contribution 0.042 0.559 0.817 0.991 sum 6.266 -3.961 -2.562 7.844 Atomic orbital electron populations 1.21488 0.94855 1.01326 1.00713 1.21756 0.96269 0.96726 1.00768 1.21049 0.80943 0.97779 0.98179 1.44064 1.05394 1.60164 1.06339 1.19815 0.96086 1.51753 0.82050 0.87598 1.25786 0.96425 0.95720 1.01027 1.70210 1.18099 1.30045 1.30404 0.85372 0.79101 0.78656 0.77912 1.20721 1.20784 1.18968 1.20421 0.89662 0.82451 0.83773 1.90491 1.76321 1.59152 1.26942 1.21177 0.91662 0.96004 1.02154 0.88454 1.21477 0.90914 0.98488 1.04713 1.20019 0.90598 0.82892 0.74556 1.90702 1.65257 1.38727 1.53796 1.45548 1.11721 1.06520 1.71283 1.21168 0.90602 0.83468 1.01235 0.88952 1.22120 1.02182 1.00177 0.96858 1.21725 0.94655 0.99302 0.98655 0.93108 0.93551 0.92219 0.96341 0.89240 0.91508 0.94999 0.91708 0.88701 0.88734 0.75595 0.92293 0.89987 0.89589 0.91262 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.91 71.98 0.71 -3.82 16 2 C -0.12 -5.15 5.65 30.59 0.17 -4.97 16 3 C 0.14 6.84 4.59 86.38 0.40 7.24 16 4 N -0.44 -21.50 2.63 -635.55 -1.67 -23.18 16 5 C -0.37 -17.66 8.92 84.04 0.75 -16.91 16 6 H 0.11 4.82 6.15 -2.91 -0.02 4.81 16 7 C 0.02 0.78 4.65 84.93 0.40 1.17 16 8 N -0.85 -40.32 8.89 21.66 0.19 -40.12 16 9 Si 0.96 37.77 29.65 68.60 2.03 39.81 16 10 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 13 C 0.45 20.62 6.56 87.65 0.57 21.19 16 14 O -0.64 -32.65 16.15 -3.06 -0.05 -32.70 16 15 C -0.09 -3.24 1.95 -11.30 -0.02 -3.26 16 16 H 0.10 3.61 6.09 -2.38 -0.01 3.59 16 17 C -0.12 -4.10 5.36 29.81 0.16 -3.94 16 18 C 0.53 17.66 7.72 87.71 0.68 18.34 16 19 O -0.60 -24.01 17.78 -3.04 -0.05 -24.06 16 20 N -0.70 -17.35 5.12 -446.63 -2.29 -19.63 16 21 C 0.14 3.00 3.68 45.11 0.17 3.16 16 22 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.16 -2.36 9.38 71.98 0.68 -1.69 16 24 C -0.11 -3.10 4.19 30.68 0.13 -2.97 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.09 4.31 5.93 -2.39 -0.01 4.30 16 30 H 0.07 3.27 6.38 -2.39 -0.02 3.25 16 31 H 0.03 1.55 7.50 -2.39 -0.02 1.53 16 32 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 33 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.09 3.47 8.10 -2.39 -0.02 3.45 16 35 H 0.41 8.40 8.66 -92.70 -0.80 7.60 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 2.16 8.06 -2.39 -0.02 2.15 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -60.83 320.72 3.19 -57.65 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.24 Total: 28.72 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 4.79 Total: 13.53 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -3.77 Total: -82.94 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.10 Total: -56.77 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.81 kcal Total: -60.83 3.19 -57.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330771654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.517 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds