Wall clock time and date at job start Mon Mar 30 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 H 1.09009 * 109.12851 * 55.51753 * 3 2 1 5 5 C 1.52915 * 109.30245 * 174.99844 * 3 2 1 6 6 C 1.53346 * 108.67425 * 171.06419 * 5 3 2 7 7 H 1.09003 * 109.67210 * 172.73817 * 6 5 3 8 8 C 1.50696 * 109.67373 * 52.20854 * 6 5 3 9 9 O 1.21296 * 120.00010 * 264.42885 * 8 6 5 10 10 N 1.34772 * 120.00214 * 84.42415 * 8 6 5 11 11 C 1.37102 * 120.00084 * 185.71683 * 10 8 6 12 12 H 1.07999 * 119.99699 * 5.49833 * 11 10 8 13 13 C 1.38952 * 120.00313 * 185.49263 * 11 10 8 14 14 N 1.31409 * 119.99399 * 14.58712 * 13 11 10 15 15 Si 1.86793 * 120.00130 * 194.58434 * 13 11 10 16 16 H 1.48501 * 109.47145 * 90.00520 * 15 13 11 17 17 H 1.48506 * 109.47216 * 210.00185 * 15 13 11 18 18 H 1.48497 * 109.47324 * 329.99732 * 15 13 11 19 19 C 1.46499 * 120.00301 * 5.72404 * 10 8 6 20 20 C 1.52995 * 109.47242 * 93.97199 * 19 10 8 21 21 C 1.53072 * 108.41297 * 292.45809 * 6 5 3 22 22 C 1.50174 * 109.89311 * 48.91675 * 21 6 5 23 23 O 1.21277 * 118.24870 * 162.44255 * 22 21 6 24 24 N 1.33351 * 123.50350 * 342.41514 * 22 21 6 25 25 H 1.08996 * 109.47030 * 59.99738 * 1 2 3 26 26 H 1.08997 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46690 * 299.99811 * 1 2 3 28 28 H 1.08993 * 109.46835 * 239.99976 * 2 1 3 29 29 H 1.09004 * 109.46874 * 119.99922 * 2 1 3 30 30 H 1.09004 * 109.60386 * 290.82591 * 5 3 2 31 31 H 1.09002 * 109.59962 * 51.30903 * 5 3 2 32 32 H 0.97008 * 119.99899 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47604 * 213.97805 * 19 10 8 34 34 H 1.09006 * 109.46870 * 333.97493 * 19 10 8 35 35 H 1.09007 * 109.47118 * 183.23129 * 20 19 10 36 36 H 1.08997 * 109.47554 * 303.23233 * 20 19 10 37 37 H 1.08999 * 109.47024 * 63.24220 * 20 19 10 38 38 H 1.09001 * 109.40412 * 288.78174 * 21 6 5 39 39 H 1.09010 * 109.33237 * 169.00057 * 21 6 5 40 40 H 0.96999 * 117.94556 * 182.22935 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6094 1.9736 0.8489 5 6 3.5640 1.4398 0.1258 6 6 4.0778 2.8669 -0.0999 7 1 5.1461 2.9101 0.1122 8 6 3.3412 3.8204 0.8051 9 8 2.3749 4.4254 0.3910 10 7 3.7560 4.0009 2.0746 11 6 3.0198 4.7765 2.9326 12 1 2.0638 5.1697 2.6197 13 6 3.5035 5.0565 4.2048 14 7 4.7661 4.8324 4.4916 15 14 2.3589 5.7514 5.5072 16 1 1.7321 4.6363 6.2614 17 1 3.1336 6.6070 6.4416 18 1 1.3010 6.5636 4.8541 19 6 4.9937 3.3686 2.5378 20 6 6.1573 4.3495 2.3808 21 6 3.8271 3.2454 -1.5618 22 6 2.4090 2.9240 -1.9369 23 8 1.9463 3.4430 -2.9306 24 7 1.6313 2.0980 -1.2360 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8481 1.1021 1.1225 31 1 3.9916 0.7742 -0.6240 32 1 5.1040 5.0282 5.3796 33 1 4.8901 3.0927 3.5872 34 1 5.1891 2.4751 1.9449 35 1 7.0869 3.8600 2.6714 36 1 6.2249 4.6697 1.3410 37 1 5.9892 5.2176 3.0181 38 1 4.5073 2.6846 -2.2028 39 1 4.0034 4.3131 -1.6934 40 1 0.7377 1.9221 -1.5698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330827552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:46 Heat of formation + Delta-G solvation = -67.004858 kcal Electronic energy + Delta-G solvation = -22222.982355 eV Core-core repulsion = 19037.947216 eV Total energy + Delta-G solvation = -3185.035139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42088 -38.29314 -36.54342 -35.18219 -33.42169 -31.88030 -31.41317 -29.43709 -28.76010 -25.81927 -24.29962 -22.78734 -21.95226 -21.44500 -19.94776 -18.05374 -16.92033 -16.69994 -16.08235 -15.81252 -14.98219 -14.68289 -14.28679 -14.09543 -13.85445 -13.51539 -13.22212 -13.08136 -12.90142 -12.77675 -12.12050 -11.91730 -11.57934 -11.42931 -11.23503 -11.18716 -11.10961 -10.96495 -10.77928 -10.70386 -10.47303 -10.32443 -10.13416 -9.93633 -9.23412 -8.88464 -8.59051 -8.33150 -7.76665 -6.26927 -3.83944 3.11718 3.22590 3.22969 3.27831 3.72529 3.84846 4.07417 4.65646 4.79329 4.91128 4.94382 5.04442 5.16840 5.24690 5.39616 5.45795 5.62948 5.69624 5.80566 5.86445 5.93278 5.95581 6.05551 6.11540 6.19774 6.25038 6.32253 6.41860 6.60993 6.73929 6.82437 7.24326 7.32832 7.49989 7.85138 7.86731 8.04469 8.50129 8.75054 9.16208 9.41776 9.95456 10.63164 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.006740 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.030625 B = 4153.230207 C = 4530.086995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.141 3.859 4 H 0.082 0.918 5 C -0.117 4.117 6 C -0.109 4.109 7 H 0.095 0.905 8 C 0.443 3.557 9 O -0.584 6.584 10 N -0.441 5.441 11 C -0.293 4.293 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.876 5.876 15 Si 0.926 3.074 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.123 3.877 20 C -0.150 4.150 21 C -0.112 4.112 22 C 0.546 3.454 23 O -0.577 6.577 24 N -0.704 5.704 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.265 0.735 33 H 0.104 0.896 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.015 0.985 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -10.735 -3.365 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.036 3.964 4 H 0.100 0.900 5 C -0.155 4.155 6 C -0.131 4.131 7 H 0.113 0.887 8 C 0.231 3.769 9 O -0.468 6.468 10 N -0.160 5.160 11 C -0.421 4.421 12 H 0.120 0.880 13 C -0.178 4.178 14 N -0.518 5.518 15 Si 0.753 3.247 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.000 4.000 20 C -0.208 4.208 21 C -0.153 4.153 22 C 0.334 3.666 23 O -0.457 6.457 24 N -0.355 5.355 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.589 -10.080 -3.773 10.779 hybrid contribution -0.541 0.255 0.813 1.009 sum 0.048 -9.825 -2.960 10.261 Atomic orbital electron populations 1.21793 0.95635 1.01622 1.02192 1.21921 0.96453 0.96044 1.02763 1.20959 0.95176 0.92511 0.87778 0.90037 1.21857 0.94368 0.95914 1.03362 1.21387 1.01765 0.95291 0.94660 0.88712 1.19689 0.87751 0.86849 0.82627 1.90569 1.30345 1.51697 1.74224 1.43838 1.21016 1.42598 1.08500 1.19807 1.02158 1.27165 0.92975 0.87963 1.25227 0.96131 0.97821 0.98638 1.70128 1.11812 1.48588 1.21233 0.85911 0.79899 0.78680 0.80172 1.20495 1.21025 1.19599 1.21581 0.84213 0.92805 1.01427 1.22344 0.95867 1.03357 0.99207 1.21411 0.93656 1.04408 0.95786 1.19776 0.88373 0.76707 0.81765 1.90670 1.74771 1.51874 1.28410 1.45338 1.17511 1.47265 1.25392 0.92825 0.92565 0.92162 0.91527 0.90488 0.89543 0.90788 0.92462 0.87811 0.95146 0.94905 0.96567 0.87746 0.88782 0.88150 0.77295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.75 37.16 0.36 -1.27 16 2 C -0.13 -1.47 5.58 -26.73 -0.15 -1.62 16 3 C 0.14 2.09 2.37 -68.38 -0.16 1.92 16 4 H 0.08 1.48 7.27 -51.92 -0.38 1.10 16 5 C -0.12 -1.63 4.79 -26.60 -0.13 -1.76 16 6 C -0.11 -1.87 2.19 -91.56 -0.20 -2.07 16 7 H 0.09 1.49 6.64 -51.93 -0.34 1.15 16 8 C 0.44 10.05 5.42 -10.99 -0.06 9.99 16 9 O -0.58 -15.47 14.21 5.54 0.08 -15.39 16 10 N -0.44 -10.49 2.63 -114.81 -0.30 -10.80 16 11 C -0.29 -7.74 9.51 -14.93 -0.14 -7.88 16 12 H 0.10 2.90 7.24 -52.49 -0.38 2.52 16 13 C 0.02 0.56 5.21 -17.47 -0.09 0.47 16 14 N -0.88 -21.29 7.39 55.50 0.41 -20.88 16 15 Si 0.93 20.05 29.58 -169.99 -5.03 15.02 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.12 2.56 5.05 -4.04 -0.02 2.54 16 20 C -0.15 -3.07 9.58 37.16 0.36 -2.71 16 21 C -0.11 -1.93 5.21 -28.10 -0.15 -2.07 16 22 C 0.55 10.55 6.39 -11.87 -0.08 10.48 16 23 O -0.58 -13.10 17.78 5.56 0.10 -13.00 16 24 N -0.70 -11.72 4.92 -54.86 -0.27 -11.99 16 25 H 0.05 0.57 6.63 -51.93 -0.34 0.22 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.15 7.24 -51.93 -0.38 0.77 16 31 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.26 6.17 8.31 -40.82 -0.34 5.83 16 33 H 0.10 2.35 6.00 -51.93 -0.31 2.04 16 34 H 0.03 0.53 5.17 -51.93 -0.27 0.26 16 35 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 2.47 5.75 -51.93 -0.30 2.18 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.89 8.10 -51.92 -0.42 1.47 16 40 H 0.39 6.10 6.98 -40.82 -0.28 5.81 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -30.91 309.31 -6.73 -37.63 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.92 Total: 8.71 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.46 Total: 6.02 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.16 Total: -43.66 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: 0.18 Total: -28.39 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.91 -6.73 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330827552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.370 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds