Wall clock time and date at job start Mon Mar 30 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 H 1.09009 * 109.12851 * 55.51753 * 3 2 1 5 5 C 1.52915 * 109.30245 * 174.99844 * 3 2 1 6 6 C 1.53346 * 108.67425 * 171.06419 * 5 3 2 7 7 H 1.09003 * 109.67210 * 172.73817 * 6 5 3 8 8 C 1.50696 * 109.67373 * 52.20854 * 6 5 3 9 9 O 1.21296 * 120.00010 * 264.42885 * 8 6 5 10 10 N 1.34772 * 120.00214 * 84.42415 * 8 6 5 11 11 C 1.37102 * 120.00084 * 185.71683 * 10 8 6 12 12 H 1.07999 * 119.99699 * 5.49833 * 11 10 8 13 13 C 1.38952 * 120.00313 * 185.49263 * 11 10 8 14 14 N 1.31409 * 119.99399 * 14.58712 * 13 11 10 15 15 Si 1.86793 * 120.00130 * 194.58434 * 13 11 10 16 16 H 1.48501 * 109.47145 * 90.00520 * 15 13 11 17 17 H 1.48506 * 109.47216 * 210.00185 * 15 13 11 18 18 H 1.48497 * 109.47324 * 329.99732 * 15 13 11 19 19 C 1.46499 * 120.00301 * 5.72404 * 10 8 6 20 20 C 1.52995 * 109.47242 * 93.97199 * 19 10 8 21 21 C 1.53072 * 108.41297 * 292.45809 * 6 5 3 22 22 C 1.50174 * 109.89311 * 48.91675 * 21 6 5 23 23 O 1.21277 * 118.24870 * 162.44255 * 22 21 6 24 24 N 1.33351 * 123.50350 * 342.41514 * 22 21 6 25 25 H 1.08996 * 109.47030 * 59.99738 * 1 2 3 26 26 H 1.08997 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46690 * 299.99811 * 1 2 3 28 28 H 1.08993 * 109.46835 * 239.99976 * 2 1 3 29 29 H 1.09004 * 109.46874 * 119.99922 * 2 1 3 30 30 H 1.09004 * 109.60386 * 290.82591 * 5 3 2 31 31 H 1.09002 * 109.59962 * 51.30903 * 5 3 2 32 32 H 0.97008 * 119.99899 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47604 * 213.97805 * 19 10 8 34 34 H 1.09006 * 109.46870 * 333.97493 * 19 10 8 35 35 H 1.09007 * 109.47118 * 183.23129 * 20 19 10 36 36 H 1.08997 * 109.47554 * 303.23233 * 20 19 10 37 37 H 1.08999 * 109.47024 * 63.24220 * 20 19 10 38 38 H 1.09001 * 109.40412 * 288.78174 * 21 6 5 39 39 H 1.09010 * 109.33237 * 169.00057 * 21 6 5 40 40 H 0.96999 * 117.94556 * 182.22935 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6094 1.9736 0.8489 5 6 3.5640 1.4398 0.1258 6 6 4.0778 2.8669 -0.0999 7 1 5.1461 2.9101 0.1122 8 6 3.3412 3.8204 0.8051 9 8 2.3749 4.4254 0.3910 10 7 3.7560 4.0009 2.0746 11 6 3.0198 4.7765 2.9326 12 1 2.0638 5.1697 2.6197 13 6 3.5035 5.0565 4.2048 14 7 4.7661 4.8324 4.4916 15 14 2.3589 5.7514 5.5072 16 1 1.7321 4.6363 6.2614 17 1 3.1336 6.6070 6.4416 18 1 1.3010 6.5636 4.8541 19 6 4.9937 3.3686 2.5378 20 6 6.1573 4.3495 2.3808 21 6 3.8271 3.2454 -1.5618 22 6 2.4090 2.9240 -1.9369 23 8 1.9463 3.4430 -2.9306 24 7 1.6313 2.0980 -1.2360 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8481 1.1021 1.1225 31 1 3.9916 0.7742 -0.6240 32 1 5.1040 5.0282 5.3796 33 1 4.8901 3.0927 3.5872 34 1 5.1891 2.4751 1.9449 35 1 7.0869 3.8600 2.6714 36 1 6.2249 4.6697 1.3410 37 1 5.9892 5.2176 3.0181 38 1 4.5073 2.6846 -2.2028 39 1 4.0034 4.3131 -1.6934 40 1 0.7377 1.9221 -1.5698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330827552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:46 Heat of formation + Delta-G solvation = -87.917688 kcal Electronic energy + Delta-G solvation = -22223.889204 eV Core-core repulsion = 19037.947216 eV Total energy + Delta-G solvation = -3185.941988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87609 -39.98092 -37.92709 -36.98240 -34.79342 -33.53411 -32.84960 -31.15295 -29.94458 -27.50001 -25.71457 -24.25035 -23.54420 -22.54225 -21.45662 -19.61772 -18.65624 -18.17039 -17.74444 -17.17719 -16.49792 -16.25598 -15.94628 -15.72278 -15.14095 -14.73446 -14.62834 -14.57160 -14.32234 -14.27070 -13.52264 -13.44109 -12.96277 -12.88144 -12.86192 -12.69925 -12.48288 -12.31191 -12.15952 -12.05335 -11.95026 -11.80538 -11.69048 -11.64755 -10.74550 -10.68741 -10.15441 -9.96630 -9.61464 -8.16543 -5.80762 1.36376 1.42700 1.52185 1.74623 2.07952 2.28641 2.47349 3.09391 3.12805 3.62460 3.68742 3.76265 3.86634 4.09972 4.24393 4.30338 4.45578 4.56798 4.62439 4.64931 4.80476 4.83086 4.89992 4.96812 5.00545 5.06014 5.11115 5.11801 5.26483 5.28788 5.41136 5.46346 5.65833 5.91452 6.11779 6.13603 6.47335 6.63386 7.26555 7.30895 7.60156 8.14521 8.69855 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.006740 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.030625 B = 4153.230207 C = 4530.086995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.137 3.863 4 H 0.039 0.961 5 C -0.113 4.113 6 C -0.100 4.100 7 H 0.120 0.880 8 C 0.436 3.564 9 O -0.634 6.634 10 N -0.452 5.452 11 C -0.333 4.333 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.872 5.872 15 Si 0.979 3.021 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.287 1.287 19 C 0.124 3.876 20 C -0.143 4.143 21 C -0.110 4.110 22 C 0.534 3.466 23 O -0.622 6.622 24 N -0.697 5.697 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.269 0.731 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -13.362 -3.080 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C 0.032 3.968 4 H 0.058 0.942 5 C -0.150 4.150 6 C -0.122 4.122 7 H 0.137 0.863 8 C 0.225 3.775 9 O -0.522 6.522 10 N -0.170 5.170 11 C -0.461 4.461 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.512 5.512 15 Si 0.804 3.196 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.213 1.213 19 C 0.002 3.998 20 C -0.201 4.201 21 C -0.150 4.150 22 C 0.323 3.677 23 O -0.507 6.507 24 N -0.346 5.346 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.377 -12.749 -3.439 13.416 hybrid contribution -1.108 1.115 0.760 1.746 sum 1.270 -11.633 -2.679 12.005 Atomic orbital electron populations 1.21815 0.95733 1.02754 1.01155 1.21872 0.96361 0.93218 1.04597 1.21077 0.96240 0.94197 0.85242 0.94249 1.21967 0.93281 0.94194 1.05606 1.21381 1.02246 0.95628 0.92906 0.86258 1.20712 0.87203 0.86808 0.82755 1.90537 1.32678 1.53749 1.75254 1.44029 1.21739 1.42455 1.08774 1.19554 1.02043 1.29724 0.94772 0.91709 1.25746 0.97362 0.97710 0.99299 1.70240 1.11886 1.47511 1.21576 0.85153 0.78120 0.78218 0.78113 1.19437 1.19869 1.21286 1.21636 0.82982 0.94092 1.01079 1.22201 0.97056 1.02190 0.98644 1.21466 0.93184 1.03715 0.96660 1.20286 0.89535 0.76458 0.81395 1.90640 1.75854 1.53635 1.30530 1.45396 1.17394 1.46426 1.25379 0.93421 0.90288 0.93758 0.89453 0.88652 0.88215 0.86485 0.91997 0.89713 0.90980 0.92008 0.96239 0.91185 0.84104 0.90572 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.75 71.98 0.70 -2.37 16 2 C -0.12 -2.33 5.58 30.60 0.17 -2.16 16 3 C 0.14 3.85 2.37 45.10 0.11 3.96 16 4 H 0.04 1.46 7.27 -2.38 -0.02 1.44 16 5 C -0.11 -2.72 4.79 30.68 0.15 -2.57 16 6 C -0.10 -3.19 2.19 -11.40 -0.02 -3.22 16 7 H 0.12 3.25 6.64 -2.39 -0.02 3.23 16 8 C 0.44 19.94 5.42 87.66 0.48 20.41 16 9 O -0.63 -35.20 14.21 -3.08 -0.04 -35.24 16 10 N -0.45 -21.68 2.63 -635.54 -1.67 -23.35 16 11 C -0.33 -18.22 9.51 84.04 0.80 -17.42 16 12 H 0.06 3.95 7.24 -2.91 -0.02 3.93 16 13 C 0.00 0.00 5.21 84.93 0.44 0.44 16 14 N -0.87 -41.99 7.39 21.66 0.16 -41.83 16 15 Si 0.98 41.57 29.58 68.60 2.03 43.60 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 C 0.12 4.96 5.05 86.38 0.44 5.40 16 20 C -0.14 -5.58 9.58 71.98 0.69 -4.89 16 21 C -0.11 -3.60 5.21 29.71 0.15 -3.44 16 22 C 0.53 20.52 6.39 87.71 0.56 21.08 16 23 O -0.62 -28.80 17.78 -3.02 -0.05 -28.85 16 24 N -0.70 -22.88 4.92 -446.65 -2.20 -25.08 16 25 H 0.05 0.97 6.63 -2.39 -0.02 0.96 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 2.20 7.24 -2.38 -0.02 2.18 16 31 H 0.12 1.94 8.11 -2.39 -0.02 1.92 16 32 H 0.27 12.27 8.31 -92.70 -0.77 11.50 16 33 H 0.08 3.72 6.00 -2.39 -0.01 3.71 16 34 H 0.07 2.25 5.17 -2.38 -0.01 2.23 16 35 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 3.27 5.75 -2.39 -0.01 3.25 16 38 H 0.14 3.23 8.14 -2.39 -0.02 3.22 16 39 H 0.08 2.87 8.10 -2.38 -0.02 2.85 16 40 H 0.39 12.34 6.98 -92.71 -0.65 11.69 16 Total: -1.00 -71.83 309.31 3.29 -68.54 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.40 Total: 26.98 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 4.66 Total: 15.23 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -3.71 Total: -90.26 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -0.10 Total: -64.09 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -71.83 3.29 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330827552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.377 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds