Wall clock time and date at job start Mon Mar 30 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47506 * 2 1 4 4 H 1.09003 * 109.29279 * 54.58452 * 3 2 1 5 5 C 1.52995 * 109.12565 * 174.05915 * 3 2 1 6 6 C 1.53341 * 108.63025 * 170.95863 * 5 3 2 7 7 H 1.09000 * 109.67377 * 52.23181 * 6 5 3 8 8 C 1.50701 * 109.67646 * 172.72732 * 6 5 3 9 9 O 1.21294 * 119.99763 * 30.66994 * 8 6 5 10 10 N 1.34774 * 120.00003 * 210.66836 * 8 6 5 11 11 C 1.37103 * 119.99996 * 180.80395 * 10 8 6 12 12 H 1.07999 * 120.00043 * 324.06040 * 11 10 8 13 13 C 1.38950 * 120.00036 * 144.05335 * 11 10 8 14 14 N 1.31412 * 119.99841 * 171.04622 * 13 11 10 15 15 Si 1.86802 * 119.99870 * 351.04078 * 13 11 10 16 16 H 1.48496 * 109.46937 * 96.07485 * 15 13 11 17 17 H 1.48498 * 109.47031 * 216.07249 * 15 13 11 18 18 H 1.48496 * 109.47193 * 336.07527 * 15 13 11 19 19 C 1.46503 * 120.00232 * 0.80666 * 10 8 6 20 20 C 1.52998 * 109.46972 * 89.45168 * 19 10 8 21 21 C 1.53067 * 108.45513 * 292.48215 * 6 5 3 22 22 C 1.50171 * 109.89387 * 48.91691 * 21 6 5 23 23 O 1.21281 * 118.25170 * 162.44303 * 22 21 6 24 24 N 1.33361 * 123.50649 * 342.41979 * 22 21 6 25 25 H 1.09003 * 109.47159 * 299.99551 * 1 2 3 26 26 H 1.09001 * 109.46953 * 59.99922 * 1 2 3 27 27 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47159 * 240.00449 * 2 1 3 29 29 H 1.09002 * 109.47532 * 120.00570 * 2 1 3 30 30 H 1.08998 * 109.60526 * 51.22987 * 5 3 2 31 31 H 1.09004 * 109.65165 * 290.71907 * 5 3 2 32 32 H 0.96996 * 119.99777 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.46989 * 209.45215 * 19 10 8 34 34 H 1.09001 * 109.46533 * 329.45090 * 19 10 8 35 35 H 1.09003 * 109.46930 * 300.00067 * 20 19 10 36 36 H 1.08998 * 109.47336 * 60.00057 * 20 19 10 37 37 H 1.09001 * 109.46993 * 179.97438 * 20 19 10 38 38 H 1.09002 * 109.40383 * 169.04919 * 21 6 5 39 39 H 1.08997 * 109.39862 * 288.87194 * 21 6 5 40 40 H 0.96996 * 117.94753 * 182.22625 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9808 0.8385 5 6 3.5627 1.4357 0.1496 6 6 4.0836 2.8598 -0.0783 7 1 3.5428 3.5554 0.5635 8 6 5.5560 2.9181 0.2376 9 8 6.2522 1.9398 0.0662 10 7 6.0991 4.0573 0.7105 11 6 7.4417 4.1154 0.9823 12 1 7.9494 3.2506 1.3830 13 6 8.1491 5.2870 0.7420 14 7 9.3887 5.4039 1.1624 15 14 7.3382 6.6956 -0.1787 16 1 6.7891 7.6726 0.7955 17 1 8.3436 7.3676 -1.0404 18 1 6.2372 6.1663 -1.0229 19 6 5.2549 5.2336 0.9343 20 6 4.6958 5.1967 2.3580 21 6 3.8563 3.2298 -1.5461 22 6 2.4432 2.9100 -1.9408 23 8 1.9972 3.4239 -2.9447 24 7 1.6524 2.0906 -1.2466 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9998 0.7639 -0.5891 31 1 3.8310 1.1043 1.1528 32 1 9.8823 6.2219 0.9951 33 1 5.8488 6.1377 0.8005 34 1 4.4314 5.2308 0.2202 35 1 4.1020 4.2924 2.4917 36 1 5.5194 5.1994 3.0720 37 1 4.0681 6.0721 2.5246 38 1 4.0381 4.2958 -1.6831 39 1 4.5435 2.6619 -2.1732 40 1 0.7636 1.9150 -1.5930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330827555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:52 Heat of formation + Delta-G solvation = -93.267806 kcal Electronic energy + Delta-G solvation = -21742.032477 eV Core-core repulsion = 18555.858490 eV Total energy + Delta-G solvation = -3186.173986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86361 -40.43755 -38.12373 -37.15909 -34.99451 -34.10991 -33.00454 -31.41156 -30.04378 -27.86380 -25.86260 -24.63217 -23.95781 -22.63583 -20.62431 -20.12165 -18.90372 -18.39130 -18.10163 -17.64121 -17.24988 -16.35447 -15.94014 -15.59119 -15.30123 -15.21049 -14.74219 -14.68168 -14.45604 -14.31320 -14.21116 -13.81379 -13.61119 -13.08235 -12.98082 -12.77906 -12.51222 -12.35243 -12.29750 -12.07685 -11.88440 -11.81023 -11.71414 -11.42371 -11.22092 -10.98790 -10.27336 -10.10119 -9.77757 -8.48052 -6.17765 1.17749 1.30155 1.39683 1.51300 1.83786 2.14799 2.26554 2.58474 2.93591 3.44377 3.57842 3.67014 3.74819 3.87423 4.04808 4.08840 4.23203 4.31327 4.33804 4.37524 4.51522 4.55298 4.66571 4.77468 4.88659 4.92291 4.93329 5.00557 5.19047 5.20591 5.31187 5.36763 5.46972 5.54719 5.83281 6.01641 6.25949 6.52744 6.90845 7.14610 7.27948 7.82767 8.68718 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.005861 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.457939 B = 4775.925302 C = 5112.540479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.145 3.855 4 H 0.105 0.895 5 C -0.109 4.109 6 C -0.097 4.097 7 H 0.120 0.880 8 C 0.470 3.530 9 O -0.609 6.609 10 N -0.476 5.476 11 C -0.322 4.322 12 H 0.049 0.951 13 C 0.003 3.997 14 N -0.923 5.923 15 Si 0.962 3.038 16 H -0.246 1.246 17 H -0.300 1.300 18 H -0.250 1.250 19 C 0.078 3.922 20 C -0.160 4.160 21 C -0.124 4.124 22 C 0.534 3.466 23 O -0.599 6.599 24 N -0.698 5.698 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.278 0.722 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.980 -3.952 0.772 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.041 3.959 4 H 0.123 0.877 5 C -0.147 4.147 6 C -0.119 4.119 7 H 0.138 0.862 8 C 0.260 3.740 9 O -0.493 6.493 10 N -0.198 5.198 11 C -0.451 4.451 12 H 0.067 0.933 13 C -0.198 4.198 14 N -0.562 5.562 15 Si 0.788 3.212 16 H -0.172 1.172 17 H -0.229 1.229 18 H -0.174 1.174 19 C -0.043 4.043 20 C -0.218 4.218 21 C -0.164 4.164 22 C 0.322 3.678 23 O -0.481 6.481 24 N -0.350 5.350 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -20.462 -4.030 0.333 20.858 hybrid contribution 0.708 0.464 -0.391 0.933 sum -19.754 -3.566 -0.058 20.073 Atomic orbital electron populations 1.21806 0.94139 1.02768 1.02352 1.21904 0.97309 0.94044 1.03819 1.21252 0.93599 0.95011 0.86043 0.87683 1.21785 0.94408 0.94198 1.04325 1.21399 0.92167 1.01176 0.97138 0.86220 1.20903 0.90505 0.83442 0.79192 1.90545 1.64836 1.36988 1.56971 1.43934 1.06952 1.11545 1.57351 1.18725 0.84031 1.00068 1.42241 0.93348 1.26200 0.95756 1.01309 0.96526 1.69788 1.11803 1.29137 1.45458 0.85620 0.77804 0.78477 0.79259 1.17201 1.22857 1.17380 1.22170 0.94237 0.88061 0.99864 1.22135 1.01014 1.03816 0.94794 1.21541 0.94021 1.04610 0.96221 1.19862 0.87651 0.77914 0.82414 1.90732 1.75265 1.53887 1.28198 1.45587 1.18020 1.46122 1.25279 0.91310 0.92782 0.91633 0.91885 0.89033 0.91532 0.88963 0.91225 0.93664 0.88108 0.90797 0.93944 0.88654 0.87926 0.88885 0.75548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.76 71.98 0.70 -0.72 16 2 C -0.13 -1.66 5.56 30.59 0.17 -1.49 16 3 C 0.14 2.31 3.08 45.13 0.14 2.45 16 4 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.11 -2.61 4.08 30.71 0.13 -2.49 16 6 C -0.10 -2.85 1.74 -11.40 -0.02 -2.87 16 7 H 0.12 2.82 5.63 -2.39 -0.01 2.81 16 8 C 0.47 20.39 6.66 87.66 0.58 20.98 16 9 O -0.61 -32.29 16.20 -3.07 -0.05 -32.34 16 10 N -0.48 -22.02 2.30 -635.53 -1.46 -23.48 16 11 C -0.32 -18.64 9.53 84.04 0.80 -17.84 16 12 H 0.05 3.29 7.87 -2.91 -0.02 3.27 16 13 C 0.00 0.14 5.46 84.93 0.46 0.61 16 14 N -0.92 -55.66 13.96 21.66 0.30 -55.36 16 15 Si 0.96 42.28 24.57 68.60 1.69 43.96 16 16 H -0.25 -9.59 7.00 99.48 0.70 -8.89 16 17 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 18 H -0.25 -10.10 6.41 99.48 0.64 -9.46 16 19 C 0.08 2.80 4.04 86.38 0.35 3.14 16 20 C -0.16 -4.57 10.06 71.98 0.72 -3.85 16 21 C -0.12 -3.68 5.26 29.70 0.16 -3.52 16 22 C 0.53 14.75 7.71 87.71 0.68 15.43 16 23 O -0.60 -20.93 17.78 -3.03 -0.05 -20.98 16 24 N -0.70 -13.65 5.12 -446.52 -2.29 -15.94 16 25 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.50 6.67 -2.39 -0.02 0.48 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 31 H 0.09 2.17 8.14 -2.38 -0.02 2.16 16 32 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.05 1.75 2.07 -2.39 0.00 1.75 16 34 H 0.10 2.89 5.69 -2.39 -0.01 2.88 16 35 H 0.07 1.81 7.37 -2.39 -0.02 1.79 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 3.05 7.39 -2.39 -0.02 3.03 16 39 H 0.09 3.07 8.10 -2.39 -0.02 3.05 16 40 H 0.41 6.75 7.04 -92.71 -0.65 6.10 16 Total: -1.00 -77.35 312.74 3.32 -74.02 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.32 Total: 20.27 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.87 Total: 9.84 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.45 Total: -94.77 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.10 Total: -53.32 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.69 Total: 43.96 kcal Total: -77.35 3.32 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330827555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.245 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds