Wall clock time and date at job start Mon Mar 30 2020 01:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46975 * 2 1 4 4 C 1.50700 * 109.46999 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99890 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99963 * 179.97438 * 4 3 2 7 7 C 1.47423 * 125.65060 * 0.05165 * 6 4 3 8 8 C 1.54907 * 104.83374 * 204.08837 * 7 6 4 9 9 C 1.55162 * 101.57838 * 322.98611 * 8 7 6 10 10 C 1.47020 * 125.64542 * 179.97438 * 6 4 3 11 11 H 1.08998 * 109.88286 * 59.41069 * 10 6 4 12 12 C 1.50703 * 109.88647 * 298.39701 * 10 6 4 13 13 O 1.21273 * 119.99926 * 0.02562 * 12 10 6 14 14 N 1.34775 * 120.00072 * 180.02562 * 12 10 6 15 15 C 1.46499 * 120.00180 * 180.02562 * 14 12 10 16 16 C 1.50701 * 109.47260 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 H 1.09003 * 109.47226 * 300.00187 * 1 2 3 25 25 H 1.09002 * 109.47271 * 60.00050 * 1 2 3 26 26 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47226 * 239.99813 * 2 1 3 28 28 H 1.09002 * 109.46530 * 120.00006 * 2 1 3 29 29 H 1.09003 * 109.47297 * 59.99856 * 3 2 1 30 30 H 1.08995 * 109.47295 * 299.99761 * 3 2 1 31 31 H 1.09005 * 110.36415 * 322.92364 * 7 6 4 32 32 H 1.09000 * 110.37347 * 85.24418 * 7 6 4 33 33 H 1.08998 * 111.00430 * 81.06043 * 8 7 6 34 34 H 1.09002 * 111.00843 * 204.87732 * 8 7 6 35 35 H 1.08997 * 110.72308 * 277.13640 * 9 8 7 36 36 H 1.09001 * 110.71558 * 153.86679 * 9 8 7 37 37 H 0.97002 * 120.00040 * 359.97438 * 14 12 10 38 38 H 1.09000 * 109.47197 * 59.99093 * 15 14 12 39 39 H 1.09007 * 109.46342 * 299.99665 * 15 14 12 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 3.6130 3.9528 0.0002 8 6 4.6947 4.8776 -0.6114 9 6 5.9949 4.2657 -0.0261 10 6 5.6839 2.7543 0.0013 11 1 6.1049 2.2710 -0.8803 12 6 6.2594 2.1351 1.2489 13 8 5.5246 1.6195 2.0644 14 7 7.5906 2.1542 1.4584 15 6 8.1501 1.5518 2.6710 16 6 9.6491 1.7064 2.6631 17 1 10.1363 2.2034 1.8372 18 6 10.3989 1.2080 3.7072 19 7 9.8056 0.6025 4.7127 20 14 12.2577 1.3928 3.6937 21 1 12.6754 2.1055 2.4598 22 1 12.6866 2.1701 4.8841 23 1 12.8891 0.0491 3.7263 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.7136 3.9621 -0.6155 32 1 3.3797 4.2637 1.0186 33 1 4.6901 4.8176 -1.6998 34 1 4.5624 5.9071 -0.2785 35 1 6.1778 4.6398 0.9811 36 1 6.8451 4.4730 -0.6759 37 1 8.1784 2.5663 0.8060 38 1 7.8937 0.4928 2.7021 39 1 7.7382 2.0512 3.5480 40 1 10.3332 0.2516 5.4470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331212081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:25 Heat of formation + Delta-G solvation = -87.713333 kcal Electronic energy + Delta-G solvation = -20840.482725 eV Core-core repulsion = 17654.549599 eV Total energy + Delta-G solvation = -3185.933126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35830 -38.32392 -36.97904 -34.34954 -34.09360 -32.38596 -31.59057 -29.81976 -27.84997 -26.92626 -24.07178 -22.72017 -21.78867 -21.34003 -19.88415 -18.86066 -17.41773 -16.98925 -16.29628 -15.66872 -15.43113 -14.98191 -14.59327 -14.37118 -14.04368 -13.82851 -13.42106 -13.22891 -13.00395 -12.73638 -12.39069 -12.07425 -11.93740 -11.85199 -11.69954 -11.47994 -11.36081 -11.14894 -10.98422 -10.91750 -10.84404 -10.75464 -10.28418 -9.56731 -9.33666 -9.22046 -8.69809 -8.34990 -7.80449 -6.12928 -4.19764 2.84144 3.07905 3.25503 3.32339 3.35549 3.43033 4.14658 4.36086 4.42380 4.45531 4.74827 4.83623 4.88078 4.97470 5.17389 5.22924 5.26976 5.29968 5.42381 5.44494 5.54188 5.60651 5.64282 5.70267 5.74213 5.80279 5.94634 6.06340 6.12561 6.27663 6.36785 7.36697 7.51048 7.58202 7.65358 7.71980 8.01416 8.43597 8.69139 8.83598 9.18279 9.46940 10.97401 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.004243 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.869194 B = 6596.860276 C = 7432.256326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.532 3.468 5 O -0.521 6.521 6 N -0.606 5.606 7 C 0.100 3.900 8 C -0.131 4.131 9 C -0.123 4.123 10 C 0.116 3.884 11 H 0.095 0.905 12 C 0.493 3.507 13 O -0.537 6.537 14 N -0.712 5.712 15 C 0.252 3.748 16 C -0.541 4.541 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.889 9.363 -13.096 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.321 3.679 5 O -0.395 6.395 6 N -0.341 5.341 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.161 4.161 10 C 0.009 3.991 11 H 0.112 0.888 12 C 0.275 3.725 13 O -0.415 6.415 14 N -0.361 5.361 15 C 0.131 3.869 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.221 0.779 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.103 8.203 -12.296 21.133 hybrid contribution 1.383 0.303 -0.100 1.419 sum -13.720 8.506 -12.397 20.354 Atomic orbital electron populations 1.21784 0.95636 1.01832 1.01548 1.21296 0.94993 0.94845 1.03799 1.21651 0.91623 1.00017 1.03791 1.20308 0.89824 0.82131 0.75674 1.90734 1.70211 1.30401 1.48198 1.48216 1.05369 1.05952 1.74572 1.22327 0.96690 0.82145 1.01139 1.22776 0.94136 0.99116 1.00836 1.22645 0.98597 0.91746 1.03161 1.21542 0.82439 0.97119 0.98049 0.88766 1.20566 0.83446 0.80740 0.87721 1.90654 1.59314 1.45079 1.46411 1.46382 1.05659 1.58644 1.25460 1.19077 0.92818 0.93805 0.81213 1.21263 0.91053 1.38946 1.06667 0.91858 1.24963 0.99242 0.94754 0.95139 1.69992 1.35871 1.37195 1.09239 0.86361 0.84572 0.77920 0.78042 1.19628 1.20830 1.20812 0.92708 0.92901 0.92475 0.91336 0.90936 0.89110 0.89433 0.90425 0.91227 0.90353 0.89518 0.89707 0.89090 0.77908 0.95637 0.95726 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.11 -1.33 5.22 -26.73 -0.14 -1.47 16 3 C -0.13 -1.52 4.71 -27.89 -0.13 -1.65 16 4 C 0.53 8.85 7.01 -10.98 -0.08 8.77 16 5 O -0.52 -11.27 15.27 -8.34 -0.13 -11.39 16 6 N -0.61 -8.93 2.84 -164.32 -0.47 -9.39 16 7 C 0.10 0.98 6.69 -2.53 -0.02 0.96 16 8 C -0.13 -1.04 7.09 -24.58 -0.17 -1.21 16 9 C -0.12 -1.35 6.40 -24.89 -0.16 -1.51 16 10 C 0.12 1.81 3.26 -68.10 -0.22 1.59 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.49 10.62 6.66 -10.98 -0.07 10.55 16 13 O -0.54 -14.11 15.06 -8.33 -0.13 -14.23 16 14 N -0.71 -15.77 5.48 -61.47 -0.34 -16.10 16 15 C 0.25 6.97 5.43 -5.19 -0.03 6.94 16 16 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 17 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 28 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 31 H 0.08 0.55 7.48 -51.93 -0.39 0.16 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -37.11 333.05 -7.96 -45.07 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.57 Total: 2.54 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.07 Total: 8.34 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.07 Total: -51.54 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.25 Total: -25.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.11 -7.96 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331212081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.641 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds