Wall clock time and date at job start Mon Mar 30 2020 01:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46975 * 2 1 4 4 C 1.50700 * 109.46999 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99890 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99963 * 179.97438 * 4 3 2 7 7 C 1.47423 * 125.65060 * 0.05165 * 6 4 3 8 8 C 1.54907 * 104.83374 * 204.08837 * 7 6 4 9 9 C 1.55162 * 101.57838 * 322.98611 * 8 7 6 10 10 C 1.47020 * 125.64542 * 179.97438 * 6 4 3 11 11 H 1.08998 * 109.88286 * 59.41069 * 10 6 4 12 12 C 1.50703 * 109.88647 * 298.39701 * 10 6 4 13 13 O 1.21273 * 119.99926 * 0.02562 * 12 10 6 14 14 N 1.34775 * 120.00072 * 180.02562 * 12 10 6 15 15 C 1.46499 * 120.00180 * 180.02562 * 14 12 10 16 16 C 1.50701 * 109.47260 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 H 1.09003 * 109.47226 * 300.00187 * 1 2 3 25 25 H 1.09002 * 109.47271 * 60.00050 * 1 2 3 26 26 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47226 * 239.99813 * 2 1 3 28 28 H 1.09002 * 109.46530 * 120.00006 * 2 1 3 29 29 H 1.09003 * 109.47297 * 59.99856 * 3 2 1 30 30 H 1.08995 * 109.47295 * 299.99761 * 3 2 1 31 31 H 1.09005 * 110.36415 * 322.92364 * 7 6 4 32 32 H 1.09000 * 110.37347 * 85.24418 * 7 6 4 33 33 H 1.08998 * 111.00430 * 81.06043 * 8 7 6 34 34 H 1.09002 * 111.00843 * 204.87732 * 8 7 6 35 35 H 1.08997 * 110.72308 * 277.13640 * 9 8 7 36 36 H 1.09001 * 110.71558 * 153.86679 * 9 8 7 37 37 H 0.97002 * 120.00040 * 359.97438 * 14 12 10 38 38 H 1.09000 * 109.47197 * 59.99093 * 15 14 12 39 39 H 1.09007 * 109.46342 * 299.99665 * 15 14 12 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 3.6130 3.9528 0.0002 8 6 4.6947 4.8776 -0.6114 9 6 5.9949 4.2657 -0.0261 10 6 5.6839 2.7543 0.0013 11 1 6.1049 2.2710 -0.8803 12 6 6.2594 2.1351 1.2489 13 8 5.5246 1.6195 2.0644 14 7 7.5906 2.1542 1.4584 15 6 8.1501 1.5518 2.6710 16 6 9.6491 1.7064 2.6631 17 1 10.1363 2.2034 1.8372 18 6 10.3989 1.2080 3.7072 19 7 9.8056 0.6025 4.7127 20 14 12.2577 1.3928 3.6937 21 1 12.6754 2.1055 2.4598 22 1 12.6866 2.1701 4.8841 23 1 12.8891 0.0491 3.7263 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.7136 3.9621 -0.6155 32 1 3.3797 4.2637 1.0186 33 1 4.6901 4.8176 -1.6998 34 1 4.5624 5.9071 -0.2785 35 1 6.1778 4.6398 0.9811 36 1 6.8451 4.4730 -0.6759 37 1 8.1784 2.5663 0.8060 38 1 7.8937 0.4928 2.7021 39 1 7.7382 2.0512 3.5480 40 1 10.3332 0.2516 5.4470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331212081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:24 Heat of formation + Delta-G solvation = -115.148577 kcal Electronic energy + Delta-G solvation = -20841.672407 eV Core-core repulsion = 17654.549599 eV Total energy + Delta-G solvation = -3187.122808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66395 -39.92361 -38.22474 -36.18423 -35.31302 -34.43584 -32.70587 -31.05335 -29.14127 -28.50381 -25.41474 -24.43651 -22.71257 -22.53777 -21.36246 -20.25908 -19.00700 -18.15080 -17.99064 -17.13057 -16.74661 -16.64776 -16.24167 -15.90022 -15.47062 -14.98209 -14.58997 -14.42765 -14.16530 -14.05682 -13.91787 -13.76221 -13.30061 -12.91344 -12.90563 -12.80299 -12.67737 -12.59930 -12.24686 -12.21154 -11.95405 -11.76990 -11.65491 -11.49775 -10.88694 -10.85661 -10.83715 -9.88821 -9.67066 -8.32218 -6.50158 1.40636 1.43110 1.56245 1.60061 1.71936 1.97966 2.32072 2.61301 3.02334 3.44284 3.57218 3.79925 3.89177 3.97439 4.06619 4.15661 4.22394 4.51050 4.56329 4.64679 4.69002 4.78384 4.83634 4.89777 4.92221 5.03365 5.10358 5.16457 5.20089 5.24717 5.26670 5.34642 5.44067 5.44858 5.65402 5.80175 6.52690 6.61013 6.85451 7.19062 7.23259 7.46064 8.80673 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.004243 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.869194 B = 6596.860276 C = 7432.256326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.515 3.485 5 O -0.588 6.588 6 N -0.609 5.609 7 C 0.089 3.911 8 C -0.114 4.114 9 C -0.119 4.119 10 C 0.119 3.881 11 H 0.102 0.898 12 C 0.484 3.516 13 O -0.593 6.593 14 N -0.705 5.705 15 C 0.270 3.730 16 C -0.554 4.554 17 H 0.087 0.913 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.990 3.010 21 H -0.249 1.249 22 H -0.276 1.276 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.408 0.592 38 H -0.026 1.026 39 H -0.014 1.014 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 12.469 -15.679 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.160 4.160 4 C 0.306 3.694 5 O -0.468 6.468 6 N -0.343 5.343 7 C -0.032 4.032 8 C -0.151 4.151 9 C -0.157 4.157 10 C 0.011 3.989 11 H 0.120 0.880 12 C 0.270 3.730 13 O -0.473 6.473 14 N -0.356 5.356 15 C 0.147 3.853 16 C -0.592 4.592 17 H 0.105 0.895 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.813 3.187 21 H -0.173 1.173 22 H -0.201 1.201 23 H -0.206 1.206 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.244 0.756 38 H -0.008 1.008 39 H 0.004 0.996 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.194 11.394 -14.934 24.160 hybrid contribution 1.342 -0.689 0.738 1.679 sum -13.852 10.705 -14.196 22.539 Atomic orbital electron populations 1.21727 0.92634 1.02506 1.03043 1.21282 0.97470 0.94936 1.01389 1.21714 0.87785 1.00135 1.06347 1.21365 0.91939 0.81746 0.74349 1.90695 1.71858 1.32929 1.51309 1.48509 1.05158 1.07569 1.73057 1.22742 0.98727 0.79699 1.02066 1.22829 0.90698 0.99678 1.01942 1.22729 1.01720 0.87847 1.03384 1.21655 0.83258 0.99954 0.94042 0.88004 1.21852 0.82607 0.79417 0.89161 1.90618 1.60461 1.47270 1.48976 1.46114 1.06660 1.58530 1.24264 1.18486 0.93772 0.90678 0.82347 1.21638 0.90734 1.39211 1.07606 0.89474 1.26168 1.05580 0.93822 0.94344 1.70168 1.38524 1.38275 1.10282 0.85031 0.76609 0.78049 0.79019 1.17259 1.20139 1.20626 0.91938 0.90537 0.92351 0.92568 0.94769 0.87741 0.85092 0.86584 0.91761 0.88022 0.86689 0.91347 0.86160 0.75599 1.00816 0.99598 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.11 -2.72 5.22 30.59 0.16 -2.56 16 3 C -0.12 -2.63 4.71 29.85 0.14 -2.49 16 4 C 0.51 17.38 7.01 87.66 0.61 17.99 16 5 O -0.59 -27.10 15.27 10.26 0.16 -26.95 16 6 N -0.61 -17.36 2.84 -792.18 -2.25 -19.61 16 7 C 0.09 1.43 6.69 86.85 0.58 2.01 16 8 C -0.11 -1.27 7.09 31.99 0.23 -1.05 16 9 C -0.12 -2.28 6.40 31.79 0.20 -2.07 16 10 C 0.12 3.64 3.26 44.60 0.15 3.79 16 11 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 12 C 0.48 21.84 6.66 87.66 0.58 22.43 16 13 O -0.59 -33.38 15.06 10.28 0.15 -33.22 16 14 N -0.71 -32.50 5.48 -466.79 -2.56 -35.05 16 15 C 0.27 15.94 5.43 85.63 0.46 16.41 16 16 C -0.55 -31.43 9.28 25.60 0.24 -31.19 16 17 H 0.09 4.42 7.60 -2.91 -0.02 4.40 16 18 C 0.00 0.00 5.46 84.65 0.46 0.47 16 19 N -0.93 -58.65 13.29 21.45 0.28 -58.37 16 20 Si 0.99 43.42 29.54 68.60 2.03 45.44 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 28 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.13 1.71 7.85 -2.39 -0.02 1.69 16 31 H 0.12 1.02 7.48 -2.38 -0.02 1.00 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.57 7.84 -2.39 -0.02 1.55 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.41 15.29 8.31 -92.71 -0.77 14.52 16 38 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 39 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -90.35 333.05 2.60 -87.75 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.25 Total: 17.80 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 4.53 Total: 22.21 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.52 Total: -113.04 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: 0.31 Total: -60.17 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -90.35 2.60 -87.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331212081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.400 kcal (2) G-P(sol) polarization free energy of solvation -90.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds