Wall clock time and date at job start Mon Mar 30 2020 01:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99745 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99753 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65138 * 0.02907 * 6 4 3 8 8 C 1.54908 * 104.92961 * 204.15299 * 7 6 4 9 9 C 1.55154 * 101.58289 * 322.93718 * 8 7 6 10 10 C 1.47290 * 125.79121 * 180.02562 * 6 4 3 11 11 H 1.08995 * 110.00297 * 298.43119 * 10 6 4 12 12 C 1.50703 * 109.85710 * 59.50473 * 10 6 4 13 13 O 1.21277 * 119.99864 * 359.28617 * 12 10 6 14 14 N 1.34772 * 120.00123 * 179.29102 * 12 10 6 15 15 C 1.46503 * 120.00103 * 179.97438 * 14 12 10 16 16 C 1.50701 * 109.46928 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99700 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00418 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46794 * 59.99943 * 20 18 16 22 22 H 1.48499 * 109.47269 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46951 * 300.00537 * 20 18 16 24 24 H 1.09006 * 109.46897 * 59.99466 * 1 2 3 25 25 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47320 * 300.00081 * 1 2 3 27 27 H 1.08999 * 109.46815 * 240.00038 * 2 1 3 28 28 H 1.09000 * 109.46465 * 120.00548 * 2 1 3 29 29 H 1.09001 * 109.46936 * 59.99684 * 3 2 1 30 30 H 1.09000 * 109.47095 * 300.00146 * 3 2 1 31 31 H 1.09002 * 110.36696 * 85.25946 * 7 6 4 32 32 H 1.08995 * 110.36608 * 323.04783 * 7 6 4 33 33 H 1.09008 * 111.00494 * 81.01141 * 8 7 6 34 34 H 1.08999 * 111.00647 * 204.85975 * 8 7 6 35 35 H 1.09002 * 110.72290 * 153.86663 * 9 8 7 36 36 H 1.08997 * 110.72022 * 277.13434 * 9 8 7 37 37 H 0.97006 * 120.00055 * 359.97438 * 14 12 10 38 38 H 1.08994 * 109.46866 * 299.99292 * 15 14 12 39 39 H 1.08996 * 109.46814 * 59.99956 * 15 14 12 40 40 H 0.97005 * 119.99956 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.6132 3.9527 -0.0002 8 6 4.6929 4.8791 -0.6130 9 6 5.9945 4.2701 -0.0280 10 6 5.6863 2.7581 0.0002 11 1 6.1064 2.3109 0.9011 12 6 6.2682 2.0937 -1.2209 13 8 5.5390 1.5353 -2.0129 14 7 7.5989 2.1200 -1.4327 15 6 8.1647 1.4736 -2.6195 16 6 9.6617 1.6465 -2.6201 17 1 10.1436 2.1837 -1.8166 18 6 10.4164 1.1179 -3.6458 19 7 9.8296 0.4632 -4.6240 20 14 12.2720 1.3327 -3.6470 21 1 12.8429 0.7118 -2.4248 22 1 12.8454 0.6774 -4.8499 23 1 12.6026 2.7803 -3.6674 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.3798 4.2638 1.0180 32 1 2.7128 3.9614 -0.6145 33 1 4.6879 4.8184 -1.7014 34 1 4.5592 5.9084 -0.2802 35 1 6.8441 4.4785 -0.6783 36 1 6.1771 4.6452 0.9789 37 1 8.1822 2.5669 -0.7994 38 1 7.9213 0.4112 -2.6053 39 1 7.7462 1.9304 -3.5162 40 1 10.3605 0.0910 -5.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331212082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:27 Heat of formation + Delta-G solvation = -113.498338 kcal Electronic energy + Delta-G solvation = -20903.744749 eV Core-core repulsion = 17716.693501 eV Total energy + Delta-G solvation = -3187.051248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66963 -39.89962 -38.18298 -36.17653 -35.30441 -34.43762 -32.70681 -31.01380 -29.14642 -28.48696 -25.35834 -24.46936 -22.78497 -22.65313 -21.19555 -20.24078 -19.05221 -18.13369 -17.91170 -17.16992 -16.75083 -16.60395 -16.27423 -15.73272 -15.54372 -14.94629 -14.57179 -14.45448 -14.22263 -14.03227 -13.92345 -13.67889 -13.50577 -12.97250 -12.87381 -12.70999 -12.66446 -12.31571 -12.24553 -12.22217 -11.96375 -11.94279 -11.66058 -11.55433 -10.86945 -10.83583 -10.80783 -9.87313 -9.64700 -8.31753 -6.49998 1.40499 1.45988 1.54063 1.62578 1.73548 1.98145 2.32051 2.60512 3.02493 3.44778 3.60225 3.81186 3.88526 3.97833 4.06175 4.10442 4.29597 4.50850 4.56791 4.66092 4.67397 4.76277 4.84267 4.88205 4.93590 5.05262 5.06579 5.16938 5.20221 5.24283 5.25289 5.33583 5.44225 5.45025 5.66007 5.80431 6.54297 6.60800 6.86584 7.19404 7.25369 7.47607 8.80653 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.004264 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.110967 B = 6564.268392 C = 7329.395122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.515 3.485 5 O -0.587 6.587 6 N -0.611 5.611 7 C 0.095 3.905 8 C -0.130 4.130 9 C -0.116 4.116 10 C 0.118 3.882 11 H 0.103 0.897 12 C 0.484 3.516 13 O -0.590 6.590 14 N -0.707 5.707 15 C 0.272 3.728 16 C -0.557 4.557 17 H 0.087 0.913 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.990 3.010 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.257 1.257 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.408 0.592 38 H -0.027 1.027 39 H -0.014 1.014 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.085 13.026 14.713 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.159 4.159 4 C 0.306 3.694 5 O -0.467 6.467 6 N -0.345 5.345 7 C -0.025 4.025 8 C -0.168 4.168 9 C -0.154 4.154 10 C 0.010 3.990 11 H 0.121 0.879 12 C 0.270 3.730 13 O -0.470 6.470 14 N -0.358 5.358 15 C 0.149 3.851 16 C -0.595 4.595 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.812 3.188 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.181 1.181 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.244 0.756 38 H -0.009 1.009 39 H 0.004 0.996 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.319 11.906 13.982 23.915 hybrid contribution 1.365 -0.690 -0.645 1.660 sum -13.954 11.216 13.337 22.325 Atomic orbital electron populations 1.21725 0.92634 1.02491 1.03046 1.21280 0.97463 0.94985 1.01355 1.21707 0.87815 1.00069 1.06337 1.21351 0.91890 0.81769 0.74431 1.90701 1.71830 1.32951 1.51185 1.48584 1.05079 1.07587 1.73219 1.22737 0.97210 0.79168 1.03410 1.22859 0.92913 1.01087 0.99895 1.22779 0.99585 0.87776 1.05213 1.21712 0.83193 0.99637 0.94478 0.87923 1.21820 0.82570 0.80094 0.88520 1.90623 1.60763 1.46298 1.49325 1.46126 1.06826 1.56289 1.26535 1.18457 0.93625 0.90252 0.82790 1.21585 0.90920 1.37297 1.09658 0.89498 1.26169 1.05559 0.93818 0.94298 1.70162 1.38680 1.36376 1.11999 0.85133 0.76516 0.79251 0.77857 1.18694 1.21073 1.18100 0.91900 0.92377 0.90560 0.94771 0.92653 0.85207 0.87641 0.87066 0.89163 0.93149 0.85144 0.90122 0.85248 0.75631 1.00877 0.99648 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.11 -2.74 5.22 30.59 0.16 -2.58 16 3 C -0.12 -2.61 4.71 29.85 0.14 -2.47 16 4 C 0.51 17.36 7.00 87.66 0.61 17.97 16 5 O -0.59 -27.20 15.06 13.33 0.20 -27.00 16 6 N -0.61 -17.23 2.89 -791.55 -2.28 -19.52 16 7 C 0.10 1.48 6.68 86.85 0.58 2.06 16 8 C -0.13 -2.03 7.08 31.98 0.23 -1.80 16 9 C -0.12 -2.18 6.43 31.78 0.20 -1.98 16 10 C 0.12 3.58 3.31 44.55 0.15 3.73 16 11 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 12 C 0.48 21.81 6.74 87.66 0.59 22.40 16 13 O -0.59 -33.18 14.83 13.34 0.20 -32.99 16 14 N -0.71 -32.57 5.22 -466.80 -2.44 -35.01 16 15 C 0.27 16.05 5.43 85.63 0.46 16.52 16 16 C -0.56 -31.63 9.28 25.60 0.24 -31.39 16 17 H 0.09 4.39 7.60 -2.91 -0.02 4.37 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 20 Si 0.99 43.39 29.54 68.60 2.03 45.41 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 28 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 29 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.11 2.00 7.85 -2.39 -0.02 1.98 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.18 7.47 -2.39 -0.02 1.16 16 33 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.75 7.42 -2.39 -0.02 1.73 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.41 15.29 8.13 -92.70 -0.75 14.53 16 38 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 39 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -90.54 331.92 2.80 -87.74 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.27 Total: 18.35 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 4.54 Total: 21.43 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.44 Total: -112.96 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: 0.40 Total: -59.98 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -90.54 2.80 -87.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331212082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.758 kcal (2) G-P(sol) polarization free energy of solvation -90.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds