Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47027 * 2 1 4 4 H 1.08995 * 109.47893 * 305.00487 * 3 2 1 5 5 C 1.50700 * 109.47344 * 184.99862 * 3 2 1 6 6 H 1.07995 * 120.00551 * 244.19198 * 5 3 2 7 7 C 1.37886 * 119.99455 * 64.19650 * 5 3 2 8 8 N 1.31506 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99784 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47254 * 59.99818 * 9 7 5 11 11 H 1.48494 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47379 * 299.99977 * 9 7 5 13 13 N 1.46510 * 109.46857 * 65.00478 * 3 2 1 14 14 C 1.34772 * 119.99726 * 257.34499 * 13 3 2 15 15 O 1.21283 * 120.00267 * 4.99083 * 14 13 3 16 16 C 1.50703 * 120.00063 * 184.98518 * 14 13 3 17 17 C 1.50702 * 115.54651 * 31.35157 * 16 14 13 18 18 O 1.21285 * 119.99564 * 245.95375 * 17 16 14 19 19 N 1.34778 * 120.00235 * 65.95066 * 17 16 14 20 20 C 1.46499 * 119.99961 * 184.84915 * 19 17 16 21 21 C 1.46495 * 119.99545 * 4.85286 * 19 17 16 22 22 C 1.53001 * 117.50202 * 245.64529 * 16 14 13 23 23 C 1.52993 * 117.50234 * 177.01955 * 16 14 13 24 24 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47499 * 59.99711 * 1 2 3 26 26 H 1.08997 * 109.47047 * 299.99142 * 1 2 3 27 27 H 1.08993 * 109.47173 * 120.00845 * 2 1 3 28 28 H 1.09000 * 109.46722 * 240.00457 * 2 1 3 29 29 H 0.97000 * 120.00149 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99609 * 77.34573 * 13 3 2 31 31 H 1.08997 * 109.47066 * 90.00043 * 20 19 17 32 32 H 1.08997 * 109.46868 * 210.00438 * 20 19 17 33 33 H 1.08996 * 109.47171 * 329.99836 * 20 19 17 34 34 H 1.09000 * 109.47544 * 4.37744 * 21 19 17 35 35 H 1.09004 * 109.47084 * 124.38392 * 21 19 17 36 36 H 1.09007 * 109.46936 * 244.37709 * 21 19 17 37 37 H 1.09009 * 117.49581 * 359.97438 * 22 16 14 38 38 H 1.08995 * 117.50238 * 145.01728 * 22 16 14 39 39 H 1.08999 * 117.50338 * 214.97733 * 23 16 14 40 40 H 1.09002 * 117.50039 * 0.02562 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1498 1.8276 0.6824 7 6 4.1400 0.9568 -1.2666 8 7 3.3998 0.4898 -2.2481 9 14 6.0016 0.9585 -1.4198 10 1 6.5888 0.1385 -0.3298 11 1 6.3907 0.3861 -2.7336 12 1 6.5056 2.3516 -1.3175 13 7 1.6525 2.0974 1.2520 14 6 0.6154 2.9579 1.2693 15 8 -0.0535 3.1218 0.2709 16 6 0.2867 3.7166 2.5293 17 6 1.4613 4.0484 3.4132 18 8 1.5527 3.5468 4.5137 19 7 2.4101 4.9023 2.9809 20 6 3.6045 5.1432 3.7943 21 6 2.2470 5.5897 1.6975 22 6 -1.0471 3.4078 3.2123 23 6 -0.8579 4.7297 2.4657 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 3.8205 0.1472 -3.0522 30 1 2.1423 1.9116 2.0683 31 1 4.3807 4.4288 3.5205 32 1 3.9651 6.1567 3.6189 33 1 3.3561 5.0234 4.8488 34 1 1.2712 5.3472 1.2768 35 1 2.3195 6.6665 1.8503 36 1 3.0293 5.2668 1.0104 37 1 -1.6871 2.6561 2.7501 38 1 -1.0752 3.4444 4.3013 39 1 -0.7617 5.6361 3.0635 40 1 -1.3736 4.8473 1.5126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331797409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -49.665382 kcal Electronic energy + Delta-G solvation = -21891.051738 eV Core-core repulsion = 18706.768495 eV Total energy + Delta-G solvation = -3184.283243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57285 -38.58430 -36.19175 -35.44205 -34.82124 -32.38446 -31.00777 -28.33903 -27.25604 -26.38164 -24.28617 -22.83850 -22.45448 -20.95357 -19.69837 -18.78940 -17.72243 -16.39569 -16.23207 -15.82444 -15.24911 -15.08085 -14.48954 -14.34115 -14.03294 -13.61485 -12.94943 -12.80202 -12.73448 -12.46965 -12.39869 -12.34902 -11.98188 -11.57193 -11.52184 -11.32951 -11.05023 -10.95481 -10.82908 -10.43519 -10.30128 -10.20286 -9.84288 -9.72275 -9.23701 -9.03982 -8.64367 -8.50433 -7.91703 -6.14069 -4.22237 2.55242 2.97072 3.00705 3.23847 3.29514 3.30839 3.82369 4.08346 4.35186 4.46023 4.88573 4.91539 5.17920 5.19452 5.25432 5.32527 5.45911 5.60520 5.64586 5.77903 5.82535 5.87538 5.95297 6.14684 6.27607 6.32011 6.46739 6.52915 6.93094 7.09606 7.24767 7.31862 7.35692 7.54748 7.67547 7.88778 8.10284 8.16390 8.57653 8.76027 9.02195 9.44445 10.92219 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.007309 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.784548 B = 3829.858004 C = 4796.390005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.267 3.733 4 H 0.062 0.938 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.697 5.697 14 C 0.548 3.452 15 O -0.544 6.544 16 C -0.198 4.198 17 C 0.555 3.445 18 O -0.537 6.537 19 N -0.609 5.609 20 C 0.085 3.915 21 C 0.072 3.928 22 C -0.122 4.122 23 C -0.133 4.133 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.094 0.906 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 8.804 8.852 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.166 3.834 4 H 0.080 0.920 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.343 5.343 14 C 0.332 3.668 15 O -0.423 6.423 16 C -0.204 4.204 17 C 0.342 3.658 18 O -0.414 6.414 19 N -0.342 5.342 20 C -0.058 4.058 21 C -0.071 4.071 22 C -0.160 4.160 23 C -0.171 4.171 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.048 8.561 8.482 12.713 hybrid contribution 1.481 -0.131 0.178 1.497 sum -2.567 8.430 8.660 12.356 Atomic orbital electron populations 1.21739 0.98595 0.98729 1.00599 1.21887 0.92512 0.99947 1.02082 1.18893 0.94295 0.89164 0.81085 0.91991 1.21213 0.90772 1.42508 1.02630 0.92373 1.24875 0.98422 0.94850 0.95407 1.69901 1.35214 1.40525 1.06376 0.86558 0.85117 0.78362 0.77360 1.20196 1.21116 1.20261 1.46401 1.30681 1.43109 1.14154 1.18769 0.81479 0.80004 0.86589 1.90673 1.50586 1.66892 1.34149 1.21678 0.91215 1.07984 0.99559 1.19341 0.82317 0.78240 0.85892 1.90677 1.77431 1.52265 1.21000 1.47557 1.20743 1.44092 1.21767 1.21651 0.86633 1.01200 0.96283 1.21957 1.04281 0.96376 0.84446 1.22988 0.93561 0.99305 1.00161 1.23068 0.97312 0.93139 1.03581 0.95086 0.93229 0.94780 0.94734 0.88780 0.92513 0.78048 0.92246 0.91245 0.90572 0.89691 0.91953 0.91203 0.87369 0.87337 0.88079 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.27 37.16 0.34 -2.63 16 2 C -0.13 -2.98 5.48 -26.73 -0.15 -3.13 16 3 C 0.27 6.60 2.13 -69.08 -0.15 6.45 16 4 H 0.06 1.76 7.15 -51.93 -0.37 1.39 16 5 C -0.53 -13.96 8.75 -34.44 -0.30 -14.26 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.44 11.62 55.43 0.64 -23.79 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.70 -14.77 4.45 -54.93 -0.24 -15.01 16 14 C 0.55 10.81 5.09 -10.99 -0.06 10.76 16 15 O -0.54 -12.17 15.28 5.56 0.08 -12.09 16 16 C -0.20 -3.16 1.28 -156.81 -0.20 -3.36 16 17 C 0.56 9.07 6.06 -10.98 -0.07 9.00 16 18 O -0.54 -9.95 16.27 5.55 0.09 -9.86 16 19 N -0.61 -8.70 3.27 -189.52 -0.62 -9.32 16 20 C 0.08 1.01 10.52 59.85 0.63 1.64 16 21 C 0.07 0.94 10.20 59.84 0.61 1.56 16 22 C -0.12 -1.66 9.76 -26.73 -0.26 -1.92 16 23 C -0.13 -1.70 8.88 -26.73 -0.24 -1.94 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.70 6.98 -51.93 -0.36 0.34 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 2.46 6.31 -51.93 -0.33 2.13 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 7.94 8.05 -40.82 -0.33 7.61 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.08 0.93 7.36 -51.93 -0.38 0.55 16 34 H 0.08 1.21 4.92 -51.93 -0.26 0.96 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 37 H 0.11 1.45 8.14 -51.92 -0.42 1.03 16 38 H 0.11 1.37 8.01 -51.93 -0.42 0.96 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.12 1.54 7.67 -51.93 -0.40 1.14 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -30.31 330.24 -6.20 -36.51 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.19 Total: 9.17 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.07 Total: 3.89 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.22 Total: -48.12 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.18 Total: -21.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.31 -6.20 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331797409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.151 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds