Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47027 * 2 1 4 4 H 1.08995 * 109.47893 * 305.00487 * 3 2 1 5 5 C 1.50700 * 109.47344 * 184.99862 * 3 2 1 6 6 H 1.07995 * 120.00551 * 244.19198 * 5 3 2 7 7 C 1.37886 * 119.99455 * 64.19650 * 5 3 2 8 8 N 1.31506 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99784 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47254 * 59.99818 * 9 7 5 11 11 H 1.48494 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47379 * 299.99977 * 9 7 5 13 13 N 1.46510 * 109.46857 * 65.00478 * 3 2 1 14 14 C 1.34772 * 119.99726 * 257.34499 * 13 3 2 15 15 O 1.21283 * 120.00267 * 4.99083 * 14 13 3 16 16 C 1.50703 * 120.00063 * 184.98518 * 14 13 3 17 17 C 1.50702 * 115.54651 * 31.35157 * 16 14 13 18 18 O 1.21285 * 119.99564 * 245.95375 * 17 16 14 19 19 N 1.34778 * 120.00235 * 65.95066 * 17 16 14 20 20 C 1.46499 * 119.99961 * 184.84915 * 19 17 16 21 21 C 1.46495 * 119.99545 * 4.85286 * 19 17 16 22 22 C 1.53001 * 117.50202 * 245.64529 * 16 14 13 23 23 C 1.52993 * 117.50234 * 177.01955 * 16 14 13 24 24 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47499 * 59.99711 * 1 2 3 26 26 H 1.08997 * 109.47047 * 299.99142 * 1 2 3 27 27 H 1.08993 * 109.47173 * 120.00845 * 2 1 3 28 28 H 1.09000 * 109.46722 * 240.00457 * 2 1 3 29 29 H 0.97000 * 120.00149 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99609 * 77.34573 * 13 3 2 31 31 H 1.08997 * 109.47066 * 90.00043 * 20 19 17 32 32 H 1.08997 * 109.46868 * 210.00438 * 20 19 17 33 33 H 1.08996 * 109.47171 * 329.99836 * 20 19 17 34 34 H 1.09000 * 109.47544 * 4.37744 * 21 19 17 35 35 H 1.09004 * 109.47084 * 124.38392 * 21 19 17 36 36 H 1.09007 * 109.46936 * 244.37709 * 21 19 17 37 37 H 1.09009 * 117.49581 * 359.97438 * 22 16 14 38 38 H 1.08995 * 117.50238 * 145.01728 * 22 16 14 39 39 H 1.08999 * 117.50338 * 214.97733 * 23 16 14 40 40 H 1.09002 * 117.50039 * 0.02562 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1498 1.8276 0.6824 7 6 4.1400 0.9568 -1.2666 8 7 3.3998 0.4898 -2.2481 9 14 6.0016 0.9585 -1.4198 10 1 6.5888 0.1385 -0.3298 11 1 6.3907 0.3861 -2.7336 12 1 6.5056 2.3516 -1.3175 13 7 1.6525 2.0974 1.2520 14 6 0.6154 2.9579 1.2693 15 8 -0.0535 3.1218 0.2709 16 6 0.2867 3.7166 2.5293 17 6 1.4613 4.0484 3.4132 18 8 1.5527 3.5468 4.5137 19 7 2.4101 4.9023 2.9809 20 6 3.6045 5.1432 3.7943 21 6 2.2470 5.5897 1.6975 22 6 -1.0471 3.4078 3.2123 23 6 -0.8579 4.7297 2.4657 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 3.8205 0.1472 -3.0522 30 1 2.1423 1.9116 2.0683 31 1 4.3807 4.4288 3.5205 32 1 3.9651 6.1567 3.6189 33 1 3.3561 5.0234 4.8488 34 1 1.2712 5.3472 1.2768 35 1 2.3195 6.6665 1.8503 36 1 3.0293 5.2668 1.0104 37 1 -1.6871 2.6561 2.7501 38 1 -1.0752 3.4444 4.3013 39 1 -0.7617 5.6361 3.0635 40 1 -1.3736 4.8473 1.5126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331797409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -69.669876 kcal Electronic energy + Delta-G solvation = -21891.919198 eV Core-core repulsion = 18706.768495 eV Total energy + Delta-G solvation = -3185.150703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89735 -40.08832 -37.64593 -36.67396 -36.42014 -34.32579 -32.83519 -29.46018 -29.01574 -27.61038 -25.81519 -24.55673 -23.51157 -22.42874 -21.54121 -20.28584 -19.07788 -18.17517 -17.45366 -17.34850 -16.79547 -16.44831 -16.08043 -15.89448 -15.39007 -15.16041 -14.66174 -14.22959 -14.12103 -13.94041 -13.50773 -13.45248 -13.37539 -13.22445 -12.99732 -12.92520 -12.66979 -12.59352 -12.19315 -12.17156 -12.04114 -11.71410 -11.57720 -11.20047 -11.08937 -10.67577 -10.50199 -9.77146 -9.73144 -8.17678 -6.33354 1.30221 1.41777 1.42910 1.50196 1.54095 1.89426 2.28398 2.46586 2.83174 3.12181 3.31362 3.66235 3.79033 3.83345 4.19406 4.40049 4.43038 4.46571 4.51272 4.57910 4.64456 4.68348 4.70038 4.83170 4.88603 4.89739 5.02925 5.12426 5.21414 5.34693 5.39817 5.48652 5.57039 5.69805 5.92681 6.10789 6.16664 6.73582 6.81870 6.95933 7.28265 7.44387 8.88098 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.007309 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.784548 B = 3829.858004 C = 4796.390005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.019 0.981 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.699 5.699 14 C 0.552 3.448 15 O -0.574 6.574 16 C -0.217 4.217 17 C 0.554 3.446 18 O -0.564 6.564 19 N -0.607 5.607 20 C 0.081 3.919 21 C 0.073 3.927 22 C -0.114 4.114 23 C -0.108 4.108 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.266 0.734 30 H 0.392 0.608 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 10.009 10.166 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.037 0.963 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.345 5.345 14 C 0.338 3.662 15 O -0.455 6.455 16 C -0.224 4.224 17 C 0.341 3.659 18 O -0.443 6.443 19 N -0.339 5.339 20 C -0.060 4.060 21 C -0.069 4.069 22 C -0.152 4.152 23 C -0.145 4.145 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.718 9.793 9.811 14.352 hybrid contribution 1.356 -0.471 -0.251 1.457 sum -2.362 9.322 9.559 13.560 Atomic orbital electron populations 1.21587 0.96726 1.00136 0.99887 1.21752 0.94146 0.99090 1.00979 1.18476 0.93516 0.89306 0.81255 0.96300 1.21488 0.91658 1.42463 1.02844 0.92242 1.25670 1.02830 0.94419 0.95052 1.70035 1.36991 1.41183 1.06810 0.85546 0.79740 0.78590 0.77373 1.19507 1.20910 1.19566 1.46209 1.31521 1.43722 1.13039 1.19258 0.80220 0.79206 0.87553 1.90654 1.51390 1.67659 1.35798 1.21512 0.92495 1.10145 0.98214 1.19359 0.82656 0.78314 0.85576 1.90659 1.78066 1.53429 1.22149 1.47705 1.20811 1.43300 1.22074 1.21817 0.85489 1.02996 0.95745 1.22011 1.02857 0.98484 0.83596 1.23117 0.91264 0.99884 1.00921 1.23206 0.94077 0.93639 1.03605 0.92566 0.95000 0.94297 0.94163 0.91353 0.92531 0.77568 0.93027 0.87891 0.90838 0.91038 0.88088 0.92852 0.87423 0.85984 0.85210 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.27 71.98 0.67 -4.73 16 2 C -0.12 -5.84 5.48 30.59 0.17 -5.67 16 3 C 0.28 14.08 2.13 44.24 0.09 14.17 16 4 H 0.02 1.13 7.15 -2.39 -0.02 1.11 16 5 C -0.55 -29.04 8.75 25.60 0.22 -28.81 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -51.59 11.62 21.45 0.25 -51.34 16 9 Si 0.96 42.13 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 N -0.70 -29.98 4.45 -446.09 -1.99 -31.96 16 14 C 0.55 21.83 5.09 87.66 0.45 22.28 16 15 O -0.57 -26.13 15.28 -3.04 -0.05 -26.18 16 16 C -0.22 -6.68 1.28 -53.67 -0.07 -6.74 16 17 C 0.55 17.34 6.06 87.66 0.53 17.87 16 18 O -0.56 -20.23 16.27 -3.04 -0.05 -20.28 16 19 N -0.61 -16.31 3.27 -871.89 -2.85 -19.17 16 20 C 0.08 1.78 10.52 127.77 1.34 3.12 16 21 C 0.07 1.78 10.20 127.77 1.30 3.09 16 22 C -0.11 -2.88 9.76 30.59 0.30 -2.58 16 23 C -0.11 -2.50 8.88 30.59 0.27 -2.23 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.59 6.98 -2.39 -0.02 1.58 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.07 3.67 6.31 -2.39 -0.02 3.66 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.39 16.16 8.05 -92.71 -0.75 15.42 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.07 1.67 7.36 -2.39 -0.02 1.65 16 34 H 0.07 1.95 4.92 -2.39 -0.01 1.94 16 35 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 38 H 0.12 2.78 8.01 -2.39 -0.02 2.76 16 39 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.11 2.79 7.67 -2.39 -0.02 2.77 16 Total: -1.00 -66.30 330.24 3.36 -62.94 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.29 Total: 30.49 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.73 Total: 11.34 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -4.59 Total: -102.47 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.10 Total: -46.46 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.30 3.36 -62.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331797409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.728 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds