Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47243 * 2 1 4 4 H 1.08996 * 109.46848 * 54.99528 * 3 2 1 5 5 C 1.50699 * 109.47108 * 175.00068 * 3 2 1 6 6 H 1.07996 * 120.00094 * 120.00088 * 5 3 2 7 7 C 1.37881 * 120.00126 * 299.99632 * 5 3 2 8 8 N 1.31505 * 120.00211 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99679 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47126 * 90.00065 * 9 7 5 11 11 H 1.48497 * 109.47079 * 210.00025 * 9 7 5 12 12 H 1.48503 * 109.47242 * 329.99784 * 9 7 5 13 13 N 1.46499 * 109.46927 * 294.99875 * 3 2 1 14 14 C 1.34778 * 120.00365 * 85.00036 * 13 3 2 15 15 O 1.21283 * 119.99432 * 5.30800 * 14 13 3 16 16 C 1.50694 * 120.00350 * 185.31449 * 14 13 3 17 17 C 1.50699 * 115.56073 * 29.37271 * 16 14 13 18 18 O 1.21281 * 120.00475 * 270.48558 * 17 16 14 19 19 N 1.34781 * 119.99665 * 90.48897 * 17 16 14 20 20 C 1.46503 * 119.99447 * 174.79651 * 19 17 16 21 21 C 1.46490 * 120.00381 * 354.79142 * 19 17 16 22 22 C 1.52998 * 117.49790 * 175.06067 * 16 14 13 23 23 C 1.52999 * 117.49893 * 243.68521 * 16 14 13 24 24 H 1.08996 * 109.47185 * 299.99910 * 1 2 3 25 25 H 1.09001 * 109.46754 * 60.00330 * 1 2 3 26 26 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47396 * 239.99670 * 2 1 3 28 28 H 1.09008 * 109.47394 * 119.99765 * 2 1 3 29 29 H 0.97006 * 119.99950 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00038 * 265.00241 * 13 3 2 31 31 H 1.08997 * 109.47587 * 60.00126 * 20 19 17 32 32 H 1.09005 * 109.46833 * 179.97438 * 20 19 17 33 33 H 1.08998 * 109.47133 * 299.99186 * 20 19 17 34 34 H 1.09004 * 109.47453 * 94.91910 * 21 19 17 35 35 H 1.09007 * 109.47558 * 214.92082 * 21 19 17 36 36 H 1.08998 * 109.47149 * 334.91376 * 21 19 17 37 37 H 1.08996 * 117.50190 * 0.02562 * 22 16 14 38 38 H 1.09002 * 117.50125 * 214.98017 * 22 16 14 39 39 H 1.08994 * 117.49881 * 145.02397 * 23 16 14 40 40 H 1.08996 * 117.49902 * 359.97438 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3272 2.2635 11 1 3.7936 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3023 2.7176 -0.4058 16 6 -0.0095 3.2320 -2.6903 17 6 0.5728 2.5678 -3.9114 18 8 1.6174 2.9683 -4.3795 19 7 -0.0676 1.5288 -4.4832 20 6 0.4366 0.9565 -5.7340 21 6 -1.2675 0.9718 -3.8540 22 6 -1.4432 3.7572 -2.7877 23 6 -0.2693 4.7381 -2.7615 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 5.8770 0.4820 2.1130 30 1 2.2720 2.1231 -1.9978 31 1 1.4515 0.5891 -5.5825 32 1 -0.2060 0.1312 -6.0409 33 1 0.4394 1.7228 -6.5091 34 1 -2.1540 1.4266 -4.2959 35 1 -1.2944 -0.1062 -4.0135 36 1 -1.2469 1.1803 -2.7843 37 1 -2.0647 3.6925 -1.8946 38 1 -1.9654 3.6223 -3.7350 39 1 -0.0191 5.2485 -3.6915 40 1 -0.1189 5.3183 -1.8512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331797411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -63.015448 kcal Electronic energy + Delta-G solvation = -21976.509568 eV Core-core repulsion = 18791.647422 eV Total energy + Delta-G solvation = -3184.862146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95563 -40.21980 -37.82575 -36.64633 -36.50591 -34.45790 -33.23154 -29.75105 -29.14423 -27.66147 -25.83137 -24.37961 -23.50894 -22.68407 -21.62591 -20.49140 -19.13523 -18.27404 -17.71178 -17.36567 -17.05402 -16.52988 -16.17758 -16.05148 -15.39299 -15.08657 -15.03212 -14.30491 -14.07630 -14.03556 -13.79111 -13.73829 -13.53585 -13.45634 -13.02816 -12.93160 -12.74522 -12.51248 -12.43897 -12.18805 -11.89820 -11.59695 -11.44155 -11.30886 -11.05516 -10.89610 -10.68840 -9.87803 -9.75458 -8.41600 -6.49256 1.24341 1.27510 1.32694 1.43210 1.48674 1.88207 2.22860 2.26103 2.76439 2.93439 3.33425 3.63193 3.71472 3.82401 4.14561 4.25349 4.28111 4.38214 4.42070 4.48010 4.57982 4.61517 4.73829 4.77508 4.84469 4.89689 4.90592 4.97309 5.08059 5.11992 5.19664 5.32991 5.44217 5.48869 5.56379 6.06494 6.17934 6.51366 6.72554 6.97455 7.11269 7.27776 8.74377 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.006307 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.838431 B = 4438.366019 C = 4551.209962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.042 0.958 7 C 0.027 3.973 8 N -0.935 5.935 9 Si 0.944 3.056 10 H -0.255 1.255 11 H -0.291 1.291 12 H -0.254 1.254 13 N -0.701 5.701 14 C 0.553 3.447 15 O -0.563 6.563 16 C -0.216 4.216 17 C 0.550 3.450 18 O -0.568 6.568 19 N -0.609 5.609 20 C 0.085 3.915 21 C 0.070 3.930 22 C -0.100 4.100 23 C -0.123 4.123 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.271 0.729 30 H 0.396 0.604 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.597 -0.504 -12.408 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.047 0.953 5 C -0.581 4.581 6 H 0.060 0.940 7 C -0.173 4.173 8 N -0.574 5.574 9 Si 0.770 3.230 10 H -0.181 1.181 11 H -0.218 1.218 12 H -0.179 1.179 13 N -0.348 5.348 14 C 0.339 3.661 15 O -0.444 6.444 16 C -0.223 4.223 17 C 0.336 3.664 18 O -0.447 6.447 19 N -0.341 5.341 20 C -0.057 4.057 21 C -0.072 4.072 22 C -0.137 4.137 23 C -0.161 4.161 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.412 -0.377 -11.884 21.917 hybrid contribution 1.032 -0.297 0.504 1.186 sum -17.380 -0.674 -11.380 20.785 Atomic orbital electron populations 1.21769 0.94434 1.01272 1.01690 1.22187 0.96572 0.97843 1.00941 1.18860 0.93145 0.90008 0.83419 0.95259 1.21290 0.90640 1.39161 1.07010 0.93981 1.25665 0.95953 0.95683 0.99974 1.70001 1.10563 1.45880 1.30923 0.85916 0.79297 0.79973 0.77790 1.18089 1.21782 1.17871 1.46122 1.15567 1.55924 1.17225 1.19262 0.81410 0.77140 0.88250 1.90650 1.54720 1.59317 1.39665 1.21442 1.06863 1.02027 0.91962 1.19441 0.83433 0.80162 0.83315 1.90707 1.23689 1.65268 1.65035 1.47798 1.29169 1.31767 1.25388 1.21819 1.00143 0.99607 0.84102 1.22178 0.86209 1.00590 0.98235 1.23296 0.87080 0.97272 1.06074 1.23151 1.00690 0.87064 1.05153 0.93906 0.92695 0.91420 0.92004 0.93395 0.91939 0.77006 0.93657 0.86856 0.91819 0.89113 0.88956 0.92163 0.86316 0.84581 0.86234 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.59 71.98 0.62 -4.23 16 2 C -0.14 -5.93 5.11 30.60 0.16 -5.77 16 3 C 0.25 12.32 1.84 44.25 0.08 12.40 16 4 H 0.03 1.58 6.57 -2.39 -0.02 1.56 16 5 C -0.54 -31.56 9.31 25.60 0.24 -31.33 16 6 H 0.04 2.70 7.98 -2.91 -0.02 2.67 16 7 C 0.03 1.57 5.45 84.66 0.46 2.03 16 8 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 9 Si 0.94 45.23 24.41 68.60 1.67 46.91 16 10 H -0.26 -11.35 6.83 99.48 0.68 -10.67 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.88 6.53 99.48 0.65 -11.23 16 13 N -0.70 -30.55 4.88 -446.10 -2.18 -32.73 16 14 C 0.55 20.94 5.23 87.66 0.46 21.40 16 15 O -0.56 -23.25 13.85 -3.04 -0.04 -23.29 16 16 C -0.22 -6.26 1.30 -53.68 -0.07 -6.33 16 17 C 0.55 16.44 5.96 87.66 0.52 16.96 16 18 O -0.57 -21.40 16.87 -3.03 -0.05 -21.45 16 19 N -0.61 -13.49 3.27 -871.89 -2.85 -16.34 16 20 C 0.08 1.53 10.17 127.77 1.30 2.83 16 21 C 0.07 1.09 9.20 127.77 1.18 2.26 16 22 C -0.10 -1.96 8.19 30.59 0.25 -1.71 16 23 C -0.12 -2.94 9.94 30.60 0.30 -2.64 16 24 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 25 H 0.05 1.89 4.98 -2.39 -0.01 1.87 16 26 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.05 2.15 3.21 -2.38 -0.01 2.14 16 29 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 30 H 0.40 17.71 7.58 -92.71 -0.70 17.01 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.15 7.86 -2.38 -0.02 1.13 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.86 7.78 -2.38 -0.02 0.84 16 35 H 0.09 1.09 8.03 -2.38 -0.02 1.07 16 36 H 0.06 1.22 5.23 -2.39 -0.01 1.21 16 37 H 0.12 2.39 7.68 -2.39 -0.02 2.37 16 38 H 0.14 1.76 7.59 -2.39 -0.02 1.75 16 39 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -74.42 317.57 2.61 -71.81 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.26 Total: 27.04 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.50 Total: 5.88 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.73 Total: -106.90 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.09 Total: -44.74 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.91 kcal Total: -74.42 2.61 -71.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331797411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.794 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds