Wall clock time and date at job start Mon Mar 30 2020 00:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37094 * 120.00007 * 2 1 4 4 H 1.07997 * 119.99727 * 154.80179 * 3 2 1 5 5 C 1.38956 * 120.00065 * 334.80205 * 3 2 1 6 6 N 1.31411 * 119.99841 * 4.47921 * 5 3 2 7 7 Si 1.86801 * 119.99805 * 184.48331 * 5 3 2 8 8 H 1.48497 * 109.47102 * 89.99775 * 7 5 3 9 9 H 1.48499 * 109.46798 * 209.99918 * 7 5 3 10 10 H 1.48504 * 109.47008 * 329.99651 * 7 5 3 11 11 C 1.34774 * 119.99737 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99947 * 185.69862 * 11 2 1 13 13 C 1.50702 * 120.00044 * 5.70403 * 11 2 1 14 14 H 1.08998 * 110.85432 * 296.83235 * 13 11 2 15 15 C 1.54629 * 110.97168 * 60.62707 * 13 11 2 16 16 C 1.51284 * 104.19310 * 142.95325 * 15 13 11 17 17 O 1.21279 * 124.93849 * 163.71600 * 16 15 13 18 18 N 1.34413 * 110.11805 * 343.74372 * 16 15 13 19 19 C 1.46505 * 124.35042 * 179.58579 * 18 16 15 20 20 C 1.53002 * 109.46998 * 359.97438 * 19 18 16 21 21 C 1.52999 * 109.47127 * 119.98028 * 19 18 16 22 22 C 1.53002 * 109.47046 * 239.97944 * 19 18 16 23 23 C 1.46862 * 111.31437 * 359.59210 * 18 16 15 24 24 H 1.09002 * 109.47214 * 204.99255 * 1 2 3 25 25 H 1.08997 * 109.46916 * 324.99267 * 1 2 3 26 26 H 1.09002 * 109.47171 * 84.98839 * 1 2 3 27 27 H 0.97001 * 119.99812 * 179.97438 * 6 5 3 28 28 H 1.08993 * 110.48488 * 261.63217 * 15 13 11 29 29 H 1.08998 * 110.48348 * 24.14555 * 15 13 11 30 30 H 1.09000 * 109.46868 * 60.00205 * 20 19 18 31 31 H 1.09002 * 109.46867 * 179.97438 * 20 19 18 32 32 H 1.09004 * 109.47182 * 300.00059 * 20 19 18 33 33 H 1.09002 * 109.46976 * 59.99691 * 21 19 18 34 34 H 1.08996 * 109.47009 * 180.02562 * 21 19 18 35 35 H 1.09006 * 109.46937 * 300.00183 * 21 19 18 36 36 H 1.09004 * 109.47055 * 59.99989 * 22 19 18 37 37 H 1.08996 * 109.46865 * 179.97438 * 22 19 18 38 38 H 1.08994 * 109.47261 * 300.00065 * 22 19 18 39 39 H 1.08997 * 110.26216 * 258.04020 * 23 18 16 40 40 H 1.08997 * 110.28265 * 136.00312 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1534 1.2317 0.3982 5 6 1.5549 2.3334 -0.5123 6 7 0.3047 2.3000 -0.9157 7 14 2.5315 3.9216 -0.6278 8 1 3.2147 3.9880 -1.9446 9 1 1.6120 5.0793 -0.4882 10 1 3.5442 3.9600 0.4578 11 6 2.1389 -1.1672 -0.0005 12 8 3.3473 -1.1699 0.1038 13 6 1.3909 -2.4690 -0.1308 14 1 0.7229 -2.6193 0.7173 15 6 0.6127 -2.5290 -1.4657 16 6 0.7322 -3.9732 -1.9001 17 8 0.0388 -4.5051 -2.7410 18 7 1.7181 -4.5811 -1.2181 19 6 2.0954 -5.9866 -1.3872 20 6 1.1986 -6.6316 -2.4459 21 6 3.5559 -6.0722 -1.8349 22 6 1.9256 -6.7237 -0.0573 23 6 2.3686 -3.6557 -0.2815 24 1 -0.3634 -0.9314 0.4342 25 1 -0.3633 0.8417 0.5895 26 1 -0.3633 0.0898 -1.0237 27 1 -0.1112 3.1002 -1.2730 28 1 -0.4326 -2.2626 -1.3101 29 1 1.0684 -1.8678 -2.2028 30 1 1.3196 -6.1064 -3.3933 31 1 1.4797 -7.6771 -2.5720 32 1 0.1581 -6.5705 -2.1268 33 1 4.1947 -5.6127 -1.0806 34 1 3.8365 -7.1179 -1.9611 35 1 3.6769 -5.5470 -2.7824 36 1 0.8850 -6.6627 0.2617 37 1 2.2059 -7.7695 -0.1832 38 1 2.5643 -6.2643 0.6970 39 1 3.3190 -3.3118 -0.6895 40 1 2.5243 -4.1407 0.6821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334142320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:31 Heat of formation + Delta-G solvation = -76.824938 kcal Electronic energy + Delta-G solvation = -21655.996129 eV Core-core repulsion = 18470.535159 eV Total energy + Delta-G solvation = -3185.460970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00922 -40.19584 -37.77914 -36.81671 -36.34845 -33.64520 -31.48329 -28.91778 -28.24690 -28.21342 -28.00488 -26.48635 -23.94152 -22.39852 -20.45679 -19.64556 -18.88691 -18.32220 -17.47408 -17.05404 -16.44956 -16.09800 -15.93811 -15.63236 -15.01781 -14.86255 -14.70920 -14.62194 -14.25189 -14.01829 -13.60505 -13.33796 -13.17969 -12.98386 -12.95779 -12.84302 -12.72412 -12.61422 -12.39669 -12.33069 -12.23609 -12.08082 -11.98629 -11.92340 -10.96257 -10.63059 -10.26097 -9.70305 -9.65801 -8.29381 -5.98297 1.38248 1.42473 1.51964 1.53580 1.91905 1.98425 2.27800 2.93348 3.10463 3.34415 3.50095 3.86457 3.91963 3.95711 3.99447 4.10961 4.28327 4.48261 4.59118 4.66186 4.70066 4.72795 4.76581 4.83927 4.89005 4.93652 4.96664 5.00622 5.15864 5.19295 5.32080 5.38810 5.45943 5.50656 5.70841 6.09389 6.12681 6.49002 7.14601 7.17177 7.48168 8.00770 8.69113 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034859 B = 0.004857 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.037849 B = 5763.542299 C = 6088.674268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.458 5.458 3 C -0.341 4.341 4 H 0.074 0.926 5 C 0.001 3.999 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.278 1.278 9 H -0.270 1.270 10 H -0.270 1.270 11 C 0.452 3.548 12 O -0.625 6.625 13 C -0.100 4.100 14 H 0.131 0.869 15 C -0.137 4.137 16 C 0.520 3.480 17 O -0.562 6.562 18 N -0.604 5.604 19 C 0.162 3.838 20 C -0.133 4.133 21 C -0.155 4.155 22 C -0.151 4.151 23 C 0.129 3.871 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -14.665 1.768 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.176 5.176 3 C -0.470 4.470 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.204 1.204 9 H -0.195 1.195 10 H -0.195 1.195 11 C 0.241 3.759 12 O -0.512 6.512 13 C -0.122 4.122 14 H 0.149 0.851 15 C -0.178 4.178 16 C 0.309 3.691 17 O -0.442 6.442 18 N -0.337 5.337 19 C 0.079 3.921 20 C -0.190 4.190 21 C -0.213 4.213 22 C -0.209 4.209 23 C 0.006 3.994 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.064 -14.866 1.315 14.924 hybrid contribution 0.329 1.379 -0.249 1.440 sum 0.265 -13.487 1.066 13.531 Atomic orbital electron populations 1.21595 0.79170 0.99697 1.01516 1.43758 1.06826 1.04521 1.62544 1.19616 1.00271 0.86652 1.40418 0.90785 1.26069 0.96894 1.02269 0.94885 1.70091 1.11643 1.30639 1.41082 0.85028 0.78087 0.77237 0.78582 1.20393 1.19517 1.19498 1.20353 0.87428 0.85591 0.82532 1.90489 1.16031 1.87658 1.57049 1.21980 0.97980 0.92600 0.99605 0.85138 1.22336 1.03821 0.94476 0.97144 1.20876 0.79365 0.88722 0.80183 1.90673 1.48083 1.71248 1.34178 1.48621 1.33966 1.11050 1.40082 1.20774 0.95661 0.78225 0.97392 1.22004 0.98999 1.00481 0.97507 1.22178 0.94227 1.03711 1.01138 1.22148 1.02418 1.01272 0.95080 1.21832 0.95291 0.87814 0.94480 0.91799 0.92547 0.93378 0.91813 0.86279 0.89666 0.93832 0.89780 0.92969 0.91877 0.88819 0.93881 0.92596 0.89063 0.91442 0.91348 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.19 7.25 127.77 0.93 6.11 16 2 N -0.46 -22.51 3.02 -658.88 -1.99 -24.50 16 3 C -0.34 -18.78 9.29 84.04 0.78 -18.00 16 4 H 0.07 4.34 7.39 -2.91 -0.02 4.32 16 5 C 0.00 0.03 5.39 84.93 0.46 0.49 16 6 N -0.90 -46.06 10.11 21.66 0.22 -45.85 16 7 Si 0.99 41.97 29.56 68.60 2.03 44.00 16 8 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 C 0.45 20.51 6.91 87.66 0.61 21.11 16 12 O -0.62 -32.78 15.29 -3.07 -0.05 -32.83 16 13 C -0.10 -3.27 2.55 -10.48 -0.03 -3.30 16 14 H 0.13 3.52 7.44 -2.39 -0.02 3.51 16 15 C -0.14 -4.51 5.24 30.59 0.16 -4.35 16 16 C 0.52 17.16 7.84 87.90 0.69 17.85 16 17 O -0.56 -21.12 13.99 -3.03 -0.04 -21.16 16 18 N -0.60 -16.93 2.76 -770.77 -2.13 -19.06 16 19 C 0.16 3.63 1.20 3.60 0.00 3.64 16 20 C -0.13 -3.17 7.00 71.98 0.50 -2.66 16 21 C -0.15 -3.09 8.54 71.98 0.61 -2.48 16 22 C -0.15 -2.55 8.49 71.98 0.61 -1.94 16 23 C 0.13 3.75 5.91 86.82 0.51 4.26 16 24 H 0.06 2.11 5.95 -2.39 -0.01 2.10 16 25 H 0.06 2.58 6.97 -2.39 -0.02 2.57 16 26 H 0.05 2.12 7.40 -2.39 -0.02 2.10 16 27 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 28 H 0.12 3.55 7.27 -2.39 -0.02 3.53 16 29 H 0.08 3.23 7.89 -2.39 -0.02 3.21 16 30 H 0.04 1.25 7.06 -2.39 -0.02 1.24 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.42 7.08 -2.38 -0.02 1.40 16 33 H 0.06 1.26 7.90 -2.39 -0.02 1.24 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.07 7.21 -2.39 -0.02 1.06 16 39 H 0.07 2.34 7.07 -2.39 -0.02 2.33 16 40 H 0.10 2.49 7.13 -2.39 -0.02 2.47 16 Total: -1.00 -66.21 314.46 4.90 -61.31 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.03 Total: 17.36 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.84 Total: 20.74 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -3.90 Total: -89.41 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.09 Total: -53.99 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -66.21 4.90 -61.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334142320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.517 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds