Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47277 * 2 1 4 4 N 1.46504 * 109.46923 * 119.99575 * 2 1 3 5 5 C 1.33381 * 117.70773 * 299.12315 * 4 2 1 6 6 O 1.21281 * 118.48562 * 4.27480 * 5 4 2 7 7 C 1.50436 * 123.02566 * 184.29493 * 5 4 2 8 8 N 1.47043 * 108.98701 * 347.23190 * 7 5 4 9 9 C 1.34779 * 121.35520 * 222.76044 * 8 7 5 10 10 O 1.21687 * 120.00423 * 180.02562 * 9 8 7 11 11 C 1.46373 * 119.99835 * 0.02562 * 9 8 7 12 12 H 1.08007 * 120.00055 * 5.48437 * 11 9 8 13 13 C 1.40051 * 120.00251 * 185.48631 * 11 9 8 14 14 N 1.30667 * 119.99717 * 353.70461 * 13 11 9 15 15 Si 1.86800 * 120.00156 * 173.71015 * 13 11 9 16 16 H 1.48504 * 109.47056 * 94.97633 * 15 13 11 17 17 H 1.48500 * 109.47184 * 214.97845 * 15 13 11 18 18 H 1.48504 * 109.47157 * 334.97856 * 15 13 11 19 19 C 1.47516 * 117.13502 * 42.71492 * 8 7 5 20 20 C 1.45651 * 117.70634 * 119.09872 * 4 2 1 21 21 C 1.53000 * 109.21704 * 278.45596 * 20 4 2 22 22 C 1.52996 * 109.21546 * 37.78984 * 20 4 2 23 23 H 1.08997 * 109.47457 * 300.00606 * 1 2 3 24 24 H 1.08996 * 109.47244 * 60.00543 * 1 2 3 25 25 H 1.09008 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47041 * 239.99126 * 2 1 3 27 27 H 1.08994 * 109.47373 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.47082 * 299.99476 * 3 2 1 29 29 H 1.08997 * 109.47372 * 59.99342 * 3 2 1 30 30 H 1.09007 * 109.56526 * 107.11556 * 7 5 4 31 31 H 1.09005 * 109.56911 * 227.34809 * 7 5 4 32 32 H 0.97004 * 119.99608 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.67200 * 178.85436 * 19 8 7 34 34 H 1.09005 * 109.72255 * 58.23291 * 19 8 7 35 35 H 1.09008 * 109.47264 * 59.99869 * 21 20 4 36 36 H 1.09001 * 109.46871 * 179.97438 * 21 20 4 37 37 H 1.08999 * 109.47207 * 299.99978 * 21 20 4 38 38 H 1.09006 * 109.47323 * 52.43822 * 22 20 4 39 39 H 1.09001 * 109.47167 * 172.43878 * 22 20 4 40 40 H 1.08998 * 109.47342 * 292.43970 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6831 -0.1852 2.3843 6 8 0.9319 0.7663 2.4170 7 6 2.1944 -0.7409 3.6854 8 7 2.8223 -2.0466 3.4342 9 6 2.6145 -3.0944 4.2560 10 8 3.1470 -4.1640 4.0249 11 6 1.7483 -2.9460 5.4265 12 1 1.2057 -2.0253 5.5836 13 6 1.6229 -3.9976 6.3429 14 7 2.1794 -5.1529 6.0916 15 14 0.6601 -3.7489 7.9242 16 1 -0.7357 -4.2188 7.7330 17 1 1.2976 -4.5235 9.0190 18 1 0.6527 -2.3065 8.2776 19 6 3.6873 -2.1594 2.2446 20 6 2.8352 -1.8811 1.0049 21 6 1.9230 -3.0808 0.7411 22 6 3.7535 -1.6732 -0.2011 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 3.1299 1.4424 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 2.9299 -0.0577 4.1102 31 1 1.3645 -0.8628 4.3816 32 1 2.0922 -5.8814 6.7262 33 1 4.1027 -3.1656 2.1870 34 1 4.4953 -1.4304 2.3069 35 1 1.3300 -2.8963 -0.1548 36 1 2.5305 -3.9742 0.5968 37 1 1.2587 -3.2263 1.5929 38 1 4.3017 -0.7384 -0.0835 39 1 4.4584 -2.5018 -0.2682 40 1 3.1546 -1.6311 -1.1108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335261695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -59.844240 kcal Electronic energy + Delta-G solvation = -22324.877728 eV Core-core repulsion = 19140.153096 eV Total energy + Delta-G solvation = -3184.724632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70897 -37.68952 -36.69988 -34.68515 -32.81925 -32.55714 -30.55246 -27.63311 -27.44791 -26.67338 -26.63813 -24.82454 -21.96876 -21.01877 -19.64644 -17.91843 -16.70354 -16.56327 -15.75999 -15.38050 -15.07723 -14.42825 -14.26919 -14.11974 -13.71438 -13.37369 -13.14417 -12.91415 -12.77880 -12.44069 -12.17751 -12.00296 -11.85379 -11.70125 -11.43852 -11.27426 -11.16315 -11.05159 -10.97521 -10.83996 -10.75074 -10.64605 -10.30475 -10.19403 -9.27349 -8.90995 -8.43345 -7.71683 -7.41043 -6.29803 -4.74475 3.01630 3.10318 3.18154 3.20912 3.23890 4.00363 4.31618 4.46297 4.74459 4.90468 5.09771 5.20602 5.25164 5.32915 5.38575 5.58186 5.63264 5.71405 5.77124 5.82766 5.89813 5.98967 6.01476 6.08363 6.10855 6.12258 6.17289 6.27150 6.31507 6.42897 6.53563 6.65112 6.90135 7.26145 7.37169 7.84596 7.97788 8.20255 8.55170 8.93474 9.25141 10.44681 10.63697 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.006378 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.140329 B = 4389.038543 C = 4970.527380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 C -0.167 4.167 4 N -0.585 5.585 5 C 0.514 3.486 6 O -0.556 6.556 7 C 0.111 3.889 8 N -0.643 5.643 9 C 0.563 3.437 10 O -0.571 6.571 11 C -0.544 4.544 12 H 0.073 0.927 13 C 0.090 3.910 14 N -0.764 5.764 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.262 1.262 19 C 0.116 3.884 20 C 0.151 3.849 21 C -0.149 4.149 22 C -0.154 4.154 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.270 0.730 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 8.012 -10.904 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.029 3.971 3 C -0.224 4.224 4 N -0.318 5.318 5 C 0.303 3.697 6 O -0.436 6.436 7 C -0.017 4.017 8 N -0.383 5.383 9 C 0.370 3.630 10 O -0.453 6.453 11 C -0.581 4.581 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.392 5.392 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.008 4.008 20 C 0.064 3.936 21 C -0.207 4.207 22 C -0.212 4.212 23 H 0.103 0.897 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.804 7.661 -10.898 13.346 hybrid contribution -0.459 0.111 0.672 0.822 sum 0.346 7.772 -10.226 12.848 Atomic orbital electron populations 1.22249 0.95134 1.02029 1.03371 1.21084 0.94726 0.93184 0.88132 1.22190 1.00485 0.96417 1.03352 1.47510 1.51202 1.27355 1.05710 1.20802 0.80125 0.82874 0.85921 1.90569 1.36336 1.29137 1.87512 1.21587 0.99839 0.86583 0.93642 1.48467 1.51335 1.11018 1.27443 1.18218 0.81687 0.81114 0.81993 1.90604 1.54319 1.26078 1.74326 1.20946 1.28438 1.01596 1.07076 0.90925 1.25702 0.94315 0.94219 0.98855 1.70009 1.34097 1.01499 1.33631 0.86374 0.79879 0.79429 0.81298 1.19748 1.20311 1.18642 1.21597 0.91980 1.03340 0.83912 1.20836 0.91227 0.84811 0.96679 1.22138 0.99955 0.96916 1.01719 1.22202 0.99436 1.02629 0.96976 0.89652 0.92688 0.93064 0.89734 0.93162 0.92407 0.90106 0.90296 0.85995 0.91970 0.87941 0.92807 0.93286 0.91496 0.91480 0.92023 0.90926 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.09 37.16 0.34 -2.00 16 2 C 0.13 1.75 2.63 -67.93 -0.18 1.57 16 3 C -0.17 -2.08 9.06 37.15 0.34 -1.74 16 4 N -0.59 -9.13 2.30 -152.46 -0.35 -9.48 16 5 C 0.51 9.30 6.98 -11.73 -0.08 9.21 16 6 O -0.56 -10.77 12.49 5.56 0.07 -10.70 16 7 C 0.11 2.12 6.38 -5.03 -0.03 2.09 16 8 N -0.64 -13.85 2.76 -175.61 -0.48 -14.34 16 9 C 0.56 15.17 7.66 -12.99 -0.10 15.07 16 10 O -0.57 -17.36 14.54 5.20 0.08 -17.28 16 11 C -0.54 -14.75 8.86 -35.63 -0.32 -15.06 16 12 H 0.07 1.82 5.82 -52.48 -0.31 1.52 16 13 C 0.09 2.42 5.49 -17.37 -0.10 2.32 16 14 N -0.76 -22.08 11.85 55.55 0.66 -21.42 16 15 Si 0.91 19.70 29.56 -169.99 -5.03 14.67 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 C 0.12 2.08 5.19 -3.49 -0.02 2.06 16 20 C 0.15 2.26 0.90 -132.29 -0.12 2.14 16 21 C -0.15 -2.39 8.55 37.16 0.32 -2.07 16 22 C -0.15 -1.73 7.66 37.16 0.28 -1.45 16 23 H 0.08 1.40 5.83 -51.93 -0.30 1.10 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.08 0.97 5.54 -51.93 -0.29 0.68 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.08 1.21 6.00 -51.93 -0.31 0.90 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.12 2.48 5.64 -51.93 -0.29 2.19 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.10 2.00 7.00 -51.93 -0.36 1.64 16 34 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -32.13 313.10 -5.97 -38.10 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.97 Total: 3.59 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 0.34 Total: 12.15 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.18 Total: -45.24 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: 0.15 Total: -27.98 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.13 -5.97 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335261695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.748 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds