Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.52997 * 109.47452 * 174.99987 * 3 2 1 6 6 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 7 7 C 1.47309 * 126.69239 * 120.00085 * 6 3 2 8 8 C 1.51574 * 103.59458 * 179.97438 * 7 6 3 9 9 O 1.21230 * 127.16165 * 179.97438 * 8 7 6 10 10 N 1.34769 * 105.68637 * 0.02562 * 8 7 6 11 11 C 1.46501 * 124.18186 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47114 * 89.97180 * 11 10 8 13 13 C 1.52996 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47246 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00320 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99606 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46965 * 59.99687 * 18 16 14 20 20 H 1.48500 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47418 * 299.99764 * 18 16 14 22 22 C 1.33791 * 111.64128 * 359.76460 * 10 8 7 23 23 O 1.21540 * 123.76980 * 180.25349 * 22 10 8 24 24 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 26 26 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 27 27 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 28 28 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 5 3 2 30 30 H 1.08996 * 109.46952 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99992 * 5 3 2 32 32 H 1.09003 * 110.59736 * 298.48799 * 7 6 3 33 33 H 1.09003 * 110.60001 * 61.43177 * 7 6 3 34 34 H 1.08997 * 109.47542 * 209.97414 * 11 10 8 35 35 H 1.08996 * 109.46860 * 329.97589 * 11 10 8 36 36 H 1.09000 * 109.47197 * 299.99975 * 12 11 10 37 37 H 1.09000 * 109.47361 * 60.00291 * 12 11 10 38 38 H 1.08997 * 109.47360 * 300.00085 * 13 12 11 39 39 H 1.09004 * 109.47380 * 60.00482 * 13 12 11 40 40 H 0.97003 * 119.99930 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6524 2.0975 -1.2519 7 6 0.8095 3.2973 -1.3932 8 6 0.7482 3.5151 -2.8920 9 8 0.1589 4.3960 -3.4805 10 7 1.4841 2.5249 -3.4345 11 6 1.6973 2.3515 -4.8735 12 6 2.9463 3.1248 -5.3009 13 6 3.1685 2.9442 -6.8038 14 6 4.3991 3.7054 -7.2248 15 1 4.9658 4.2627 -6.4935 16 6 4.8010 3.6913 -8.5437 17 7 4.1107 3.0131 -9.4341 18 14 6.3260 4.6354 -9.0655 19 1 7.5054 4.1189 -8.3254 20 1 6.5418 4.4600 -10.5242 21 1 6.1436 6.0774 -8.7615 22 6 2.0007 1.7232 -2.4962 23 8 2.7039 0.7626 -2.7408 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9994 0.9054 -0.7161 30 1 3.9281 2.4721 0.1253 31 1 3.8532 0.9571 1.0571 32 1 -0.1872 3.1152 -0.9913 33 1 1.2728 4.1518 -0.8999 34 1 1.8315 1.2929 -5.0959 35 1 0.8318 2.7301 -5.4171 36 1 2.8120 4.1834 -5.0785 37 1 3.8119 2.7463 -4.7572 38 1 3.3026 1.8857 -7.0267 39 1 2.3029 3.3231 -7.3473 40 1 4.3936 3.0028 -10.3619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348430197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = -61.245300 kcal Electronic energy + Delta-G solvation = -20991.140858 eV Core-core repulsion = 17806.355472 eV Total energy + Delta-G solvation = -3184.785386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25099 -38.66746 -37.00220 -35.83080 -34.60370 -32.99796 -31.28225 -30.25157 -27.60985 -26.93913 -24.34574 -23.59553 -22.64790 -21.69216 -20.37149 -19.30435 -17.41877 -17.02313 -16.42424 -16.20343 -15.80823 -15.08380 -14.60993 -14.43062 -14.13731 -14.07769 -13.91567 -13.75317 -13.59192 -13.31108 -12.51667 -12.40042 -12.10985 -12.07141 -11.58808 -11.46053 -11.28844 -11.27987 -10.94635 -10.81251 -10.70744 -10.43433 -10.00235 -9.76002 -9.72959 -9.29635 -9.10007 -8.92540 -8.32443 -5.97635 -3.99851 1.73030 2.14882 2.97890 3.16465 3.36216 3.39956 3.42979 4.03432 4.36803 4.48710 4.68004 4.77006 4.86612 4.93158 5.04598 5.23676 5.29536 5.37965 5.38970 5.44682 5.63480 5.67180 5.71483 5.78875 5.81374 5.93924 6.03746 6.04603 6.20509 6.44698 6.59522 6.77943 7.03876 7.28906 7.49122 7.66490 7.80323 8.00755 8.22238 8.43617 9.05643 9.63753 11.13817 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.004090 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.163737 B = 6844.100504 C = 7167.674009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.183 3.817 4 H 0.094 0.906 5 C -0.172 4.172 6 N -0.627 5.627 7 C 0.062 3.938 8 C 0.518 3.482 9 O -0.471 6.471 10 N -0.573 5.573 11 C 0.116 3.884 12 C -0.122 4.122 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.700 3.300 23 O -0.535 6.535 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -3.442 22.662 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.082 3.918 4 H 0.112 0.888 5 C -0.230 4.230 6 N -0.367 5.367 7 C -0.064 4.064 8 C 0.305 3.695 9 O -0.341 6.341 10 N -0.317 5.317 11 C -0.003 4.003 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.402 3.598 23 O -0.408 6.408 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.969 -3.615 22.041 23.715 hybrid contribution 0.824 0.602 -0.388 1.091 sum -7.145 -3.013 21.654 23.000 Atomic orbital electron populations 1.21728 0.95569 1.01806 1.01498 1.22009 0.96381 0.95948 1.03893 1.20935 0.95493 0.93020 0.82381 0.88794 1.22234 0.94540 1.02874 1.03355 1.47818 1.53467 1.29863 1.05573 1.22489 0.98370 0.90445 0.95082 1.20814 0.77806 0.80947 0.89947 1.90820 1.41781 1.32087 1.69434 1.46691 1.47134 1.27790 1.10107 1.22063 1.01202 1.03153 0.73923 1.21990 0.94418 0.98495 1.01148 1.19025 0.97110 0.97517 0.87545 1.21152 1.10493 1.30585 0.93608 0.92787 1.25008 0.97043 0.95608 0.96720 1.69950 1.39410 1.41621 1.02455 0.86636 0.83435 0.80419 0.77389 1.20237 1.21244 1.20244 1.15920 0.80296 0.82680 0.80887 1.90954 1.39384 1.27911 1.82531 0.92587 0.92862 0.92936 0.89915 0.90527 0.90549 0.92205 0.91161 0.86566 0.86460 0.88991 0.89184 0.92943 0.92653 0.96174 0.96252 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.75 16 2 C -0.14 -1.20 5.39 -26.73 -0.14 -1.35 16 3 C 0.18 1.50 2.97 -67.93 -0.20 1.30 16 4 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 5 C -0.17 -1.53 9.23 37.16 0.34 -1.18 16 6 N -0.63 -6.71 2.34 -172.39 -0.40 -7.11 16 7 C 0.06 0.56 7.65 -4.32 -0.03 0.52 16 8 C 0.52 7.26 8.32 -10.56 -0.09 7.17 16 9 O -0.47 -8.02 17.76 5.60 0.10 -7.92 16 10 N -0.57 -9.07 2.60 -120.74 -0.31 -9.38 16 11 C 0.12 2.12 5.70 -4.04 -0.02 2.10 16 12 C -0.12 -2.66 5.48 -26.73 -0.15 -2.81 16 13 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 14 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.70 10.60 7.77 -88.02 -0.68 9.91 16 23 O -0.53 -9.76 14.83 5.33 0.08 -9.68 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 27 H 0.08 0.95 6.83 -51.93 -0.35 0.60 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.92 6.94 -51.93 -0.36 0.56 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.68 7.87 -51.93 -0.41 1.27 16 35 H 0.09 1.60 8.00 -51.93 -0.42 1.18 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -34.14 334.63 -7.50 -41.63 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.56 Total: -4.66 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.16 Total: 1.55 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.02 Total: -43.11 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.18 Total: -17.60 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.14 -7.50 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348430197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds