Wall clock time and date at job start Mon Mar 30 2020 01:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.52997 * 109.47452 * 174.99987 * 3 2 1 6 6 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 7 7 C 1.47309 * 126.69239 * 120.00085 * 6 3 2 8 8 C 1.51574 * 103.59458 * 179.97438 * 7 6 3 9 9 O 1.21230 * 127.16165 * 179.97438 * 8 7 6 10 10 N 1.34769 * 105.68637 * 0.02562 * 8 7 6 11 11 C 1.46501 * 124.18186 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47114 * 89.97180 * 11 10 8 13 13 C 1.52996 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47246 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00320 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99606 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46965 * 59.99687 * 18 16 14 20 20 H 1.48500 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47418 * 299.99764 * 18 16 14 22 22 C 1.33791 * 111.64128 * 359.76460 * 10 8 7 23 23 O 1.21540 * 123.76980 * 180.25349 * 22 10 8 24 24 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 26 26 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 27 27 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 28 28 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 5 3 2 30 30 H 1.08996 * 109.46952 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99992 * 5 3 2 32 32 H 1.09003 * 110.59736 * 298.48799 * 7 6 3 33 33 H 1.09003 * 110.60001 * 61.43177 * 7 6 3 34 34 H 1.08997 * 109.47542 * 209.97414 * 11 10 8 35 35 H 1.08996 * 109.46860 * 329.97589 * 11 10 8 36 36 H 1.09000 * 109.47197 * 299.99975 * 12 11 10 37 37 H 1.09000 * 109.47361 * 60.00291 * 12 11 10 38 38 H 1.08997 * 109.47360 * 300.00085 * 13 12 11 39 39 H 1.09004 * 109.47380 * 60.00482 * 13 12 11 40 40 H 0.97003 * 119.99930 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6524 2.0975 -1.2519 7 6 0.8095 3.2973 -1.3932 8 6 0.7482 3.5151 -2.8920 9 8 0.1589 4.3960 -3.4805 10 7 1.4841 2.5249 -3.4345 11 6 1.6973 2.3515 -4.8735 12 6 2.9463 3.1248 -5.3009 13 6 3.1685 2.9442 -6.8038 14 6 4.3991 3.7054 -7.2248 15 1 4.9658 4.2627 -6.4935 16 6 4.8010 3.6913 -8.5437 17 7 4.1107 3.0131 -9.4341 18 14 6.3260 4.6354 -9.0655 19 1 7.5054 4.1189 -8.3254 20 1 6.5418 4.4600 -10.5242 21 1 6.1436 6.0774 -8.7615 22 6 2.0007 1.7232 -2.4962 23 8 2.7039 0.7626 -2.7408 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9994 0.9054 -0.7161 30 1 3.9281 2.4721 0.1253 31 1 3.8532 0.9571 1.0571 32 1 -0.1872 3.1152 -0.9913 33 1 1.2728 4.1518 -0.8999 34 1 1.8315 1.2929 -5.0959 35 1 0.8318 2.7301 -5.4171 36 1 2.8120 4.1834 -5.0785 37 1 3.8119 2.7463 -4.7572 38 1 3.3026 1.8857 -7.0267 39 1 2.3029 3.3231 -7.3473 40 1 4.3936 3.0028 -10.3619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348430197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:55 Heat of formation + Delta-G solvation = -82.598835 kcal Electronic energy + Delta-G solvation = -20992.066817 eV Core-core repulsion = 17806.355472 eV Total energy + Delta-G solvation = -3185.711345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35428 -39.80410 -38.00690 -37.11142 -36.17846 -34.64187 -32.88108 -31.04786 -28.94420 -28.32078 -25.76886 -24.74130 -23.63085 -22.92062 -22.11656 -20.34294 -18.78978 -18.24189 -17.92616 -17.53898 -16.79338 -16.59280 -16.16211 -15.74685 -15.51390 -15.16483 -15.10823 -14.52545 -14.48434 -14.28776 -14.13034 -13.78532 -13.35105 -13.15725 -12.91992 -12.81146 -12.70737 -12.59742 -12.34037 -12.00979 -11.92390 -11.76632 -11.70788 -11.42238 -11.36834 -11.09327 -10.70579 -10.59000 -9.90484 -8.23486 -6.35262 0.64420 1.09581 1.37603 1.41357 1.49388 1.97825 2.05266 2.38970 3.07592 3.09485 3.62161 3.87758 4.04140 4.12106 4.18418 4.26855 4.32929 4.33282 4.40985 4.44483 4.55132 4.65235 4.73414 4.75626 4.91301 4.98977 5.03858 5.06210 5.17576 5.29635 5.35672 5.41927 5.47964 5.61929 5.62400 5.76788 6.17959 6.20455 6.39052 6.78763 7.08588 7.33565 8.88351 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.004090 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.163737 B = 6844.100504 C = 7167.674009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.178 3.822 4 H 0.143 0.857 5 C -0.170 4.170 6 N -0.612 5.612 7 C 0.077 3.923 8 C 0.511 3.489 9 O -0.507 6.507 10 N -0.583 5.583 11 C 0.127 3.873 12 C -0.102 4.102 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.691 3.309 23 O -0.577 6.577 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.045 0.955 38 H -0.003 1.003 39 H 0.000 1.000 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 -2.196 25.672 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.078 3.922 4 H 0.161 0.839 5 C -0.228 4.228 6 N -0.351 5.351 7 C -0.047 4.047 8 C 0.301 3.699 9 O -0.380 6.380 10 N -0.327 5.327 11 C 0.006 3.994 12 C -0.140 4.140 13 C -0.008 4.008 14 C -0.586 4.586 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.191 1.191 22 C 0.394 3.606 23 O -0.453 6.453 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.019 0.981 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.169 -2.359 25.120 26.520 hybrid contribution 0.853 0.169 -1.286 1.553 sum -7.316 -2.190 23.834 25.027 Atomic orbital electron populations 1.21712 0.94640 1.01904 1.02008 1.21988 0.97120 0.95982 1.02983 1.21335 0.95237 0.93380 0.82205 0.83908 1.22220 0.95037 1.02607 1.02926 1.48026 1.52493 1.29984 1.04564 1.22764 1.00556 0.90658 0.90740 1.21717 0.76380 0.79556 0.92271 1.90803 1.43095 1.33227 1.70826 1.46702 1.47930 1.28991 1.09103 1.21619 0.99423 1.02040 0.76359 1.21662 0.95842 0.98716 0.97828 1.18894 0.95779 0.95607 0.90527 1.21577 1.11537 1.31234 0.94301 0.92578 1.25982 1.00555 0.96467 0.96642 1.70080 1.41233 1.42772 1.02923 0.85471 0.79023 0.79153 0.77232 1.19285 1.20386 1.19096 1.16144 0.80129 0.82200 0.82154 1.90929 1.41351 1.29686 1.83343 0.92922 0.90025 0.94517 0.94010 0.88313 0.94643 0.92019 0.88554 0.82273 0.82712 0.89676 0.88960 0.93226 0.93657 0.98454 0.98135 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 71.98 0.71 -1.06 16 2 C -0.14 -2.08 5.39 30.60 0.16 -1.92 16 3 C 0.18 2.31 2.97 44.99 0.13 2.45 16 4 H 0.14 0.61 8.12 -2.39 -0.02 0.59 16 5 C -0.17 -2.67 9.23 71.98 0.66 -2.01 16 6 N -0.61 -11.57 2.34 -817.74 -1.91 -13.48 16 7 C 0.08 1.06 7.65 85.76 0.66 1.71 16 8 C 0.51 13.64 8.32 87.94 0.73 14.37 16 9 O -0.51 -16.94 17.76 -2.87 -0.05 -16.99 16 10 N -0.58 -18.59 2.60 -773.15 -2.01 -20.61 16 11 C 0.13 4.86 5.70 86.38 0.49 5.35 16 12 C -0.10 -4.64 5.48 30.59 0.17 -4.48 16 13 C 0.03 1.65 4.97 29.85 0.15 1.80 16 14 C -0.55 -32.85 9.11 25.60 0.23 -32.62 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 18 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.69 20.94 7.77 179.44 1.39 22.33 16 23 O -0.58 -22.05 14.83 -3.84 -0.06 -22.11 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.04 0.56 7.75 -2.39 -0.02 0.54 16 27 H 0.04 0.97 6.83 -2.39 -0.02 0.96 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.86 6.94 -2.39 -0.02 0.84 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 3.34 7.87 -2.39 -0.02 3.32 16 35 H 0.09 3.45 8.00 -2.39 -0.02 3.43 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -78.87 334.63 5.24 -73.63 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.01 Total: 3.16 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.95 Total: 6.49 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -3.64 Total: -91.90 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.11 Total: -39.10 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -78.87 5.24 -73.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348430197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.968 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds