Wall clock time and date at job start Mon Mar 30 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34524 * 126.68974 * 90.02408 * 4 3 2 6 6 O 1.21541 * 123.77325 * 359.96370 * 5 4 3 7 7 N 1.33788 * 112.46043 * 179.97438 * 5 4 3 8 8 C 1.46495 * 124.18022 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47136 * 89.97123 * 8 7 5 10 10 C 1.53004 * 109.46960 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46816 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00192 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99681 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00151 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99714 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47017 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46873 * 120.00044 * 15 13 11 18 18 H 1.48501 * 109.47147 * 239.99962 * 15 13 11 19 19 C 1.34764 * 111.64313 * 359.97438 * 7 5 4 20 20 O 1.21236 * 127.15832 * 180.02562 * 19 7 5 21 21 C 1.47311 * 126.69075 * 269.71381 * 4 3 2 22 22 H 1.09000 * 110.59690 * 298.55823 * 21 4 3 23 23 C 1.52992 * 110.59894 * 61.50629 * 21 4 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09001 * 109.47508 * 209.97226 * 8 7 5 32 32 H 1.09003 * 109.47601 * 329.97366 * 8 7 5 33 33 H 1.08992 * 109.47369 * 299.99907 * 9 8 7 34 34 H 1.09001 * 109.46907 * 60.00423 * 9 8 7 35 35 H 1.09004 * 109.46929 * 299.99668 * 10 9 8 36 36 H 1.08990 * 109.47366 * 60.00118 * 10 9 8 37 37 H 0.97003 * 119.99868 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47435 * 60.00378 * 23 21 4 39 39 H 1.09004 * 109.47365 * 180.02562 * 23 21 4 40 40 H 1.08998 * 109.47494 * 299.99853 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 1.4433 -1.0797 6 8 3.9013 1.4432 -2.2249 7 7 5.6052 1.4437 -0.7514 8 6 6.7005 1.4450 -1.7243 9 6 7.0805 2.8880 -2.0625 10 6 8.2240 2.8893 -3.0791 11 6 8.5987 4.3106 -3.4117 12 1 8.0736 5.1309 -2.9450 13 6 9.6113 4.5637 -4.3126 14 7 10.2505 3.5649 -4.8812 15 14 10.0754 6.3255 -4.7254 16 1 9.2122 7.2578 -3.9566 17 1 11.4975 6.5596 -4.3677 18 1 9.8857 6.5596 -6.1795 19 6 5.7797 1.4439 0.5849 20 8 6.8326 1.4448 1.1860 21 6 4.3857 1.4484 1.1802 22 1 4.2238 2.3474 1.7749 23 6 4.1599 0.1938 2.0263 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 7.5637 0.9318 -1.3004 32 1 6.3816 0.9313 -2.6312 33 1 6.2175 3.4013 -2.4864 34 1 7.3996 3.4018 -1.1556 35 1 9.0873 2.3760 -2.6555 36 1 7.9047 2.3758 -3.9858 37 1 10.9626 3.7431 -5.5153 38 1 4.3767 -0.6915 1.4284 39 1 4.8193 0.2171 2.8939 40 1 3.1226 0.1621 2.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349068201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:38 Heat of formation + Delta-G solvation = -63.138228 kcal Electronic energy + Delta-G solvation = -20788.273017 eV Core-core repulsion = 17603.405547 eV Total energy + Delta-G solvation = -3184.867470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33961 -38.54592 -36.92651 -35.78948 -34.49828 -33.24397 -31.42803 -30.90309 -27.91163 -26.10342 -24.82293 -23.45533 -22.12888 -21.60189 -20.58539 -19.94485 -17.42399 -17.04198 -16.45265 -16.04903 -15.85590 -15.12540 -14.81974 -14.59383 -14.37051 -14.29152 -13.94961 -13.63832 -13.34794 -12.86996 -12.59918 -12.40309 -12.28236 -12.19011 -12.01776 -11.60705 -11.46821 -11.11905 -10.93460 -10.84589 -10.72750 -10.46769 -10.05490 -9.76793 -9.73719 -9.30617 -9.13338 -8.93524 -8.33317 -5.98104 -4.00171 1.70516 2.13834 2.94693 3.14060 3.33572 3.40605 3.45368 3.94559 4.40934 4.48518 4.52197 4.66308 4.74998 4.91543 4.97344 5.20655 5.26459 5.29037 5.35974 5.38615 5.45481 5.62805 5.68564 5.71827 5.74375 5.78133 5.92669 6.00197 6.04339 6.38514 6.58332 6.77493 7.03512 7.25384 7.47598 7.66734 7.80030 8.00571 8.18982 8.43374 9.05842 9.63611 11.13415 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.003877 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.659394 B = 7220.050399 C = 7684.520928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.152 3.848 4 N -0.628 5.628 5 C 0.699 3.301 6 O -0.537 6.537 7 N -0.572 5.572 8 C 0.115 3.885 9 C -0.123 4.123 10 C 0.025 3.975 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.522 3.478 20 O -0.467 6.467 21 C 0.090 3.910 22 H 0.123 0.877 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 -8.030 14.875 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.031 3.969 4 N -0.367 5.367 5 C 0.401 3.599 6 O -0.410 6.410 7 N -0.316 5.316 8 C -0.004 4.004 9 C -0.161 4.161 10 C -0.012 4.012 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.309 3.691 20 O -0.336 6.336 21 C -0.018 4.018 22 H 0.141 0.859 23 C -0.206 4.206 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.134 -8.065 14.381 24.509 hybrid contribution 0.374 0.980 -0.314 1.095 sum -17.760 -7.085 14.067 23.738 Atomic orbital electron populations 1.21689 0.94817 1.02137 1.02069 1.22064 0.96325 0.97099 1.03114 1.21356 0.74545 0.97291 1.03703 1.47791 1.06067 1.77751 1.05116 1.15953 0.80959 0.77678 0.85315 1.90982 1.76900 1.54390 1.18685 1.46666 1.08339 1.67255 1.09347 1.22088 0.86275 1.01361 0.90695 1.21999 1.00962 0.92263 1.00873 1.19035 0.91670 0.97555 0.92984 1.21228 1.17603 0.92319 1.24532 0.92659 1.25017 0.96266 0.97128 0.96053 1.69971 1.23602 1.30588 1.29266 0.86519 0.78255 0.84998 0.78139 1.19762 1.20994 1.20974 1.20791 0.90975 0.74840 0.82536 1.90806 1.30709 1.45837 1.66281 1.22111 0.87643 1.02614 0.89410 0.85921 1.21968 1.03453 0.95363 0.99813 0.92338 0.92553 0.92300 0.91395 0.91238 0.89284 0.89787 0.89120 0.88951 0.92635 0.92894 0.96231 0.96145 0.93027 0.91573 0.89919 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.15 -1.06 6.14 -26.73 -0.16 -1.23 16 3 C 0.15 1.24 5.98 -4.04 -0.02 1.22 16 4 N -0.63 -7.03 2.74 -172.41 -0.47 -7.51 16 5 C 0.70 11.03 8.31 -88.03 -0.73 10.30 16 6 O -0.54 -10.31 17.15 5.33 0.09 -10.21 16 7 N -0.57 -9.31 2.60 -120.73 -0.31 -9.62 16 8 C 0.12 2.13 5.70 -4.04 -0.02 2.11 16 9 C -0.12 -2.69 5.48 -26.73 -0.15 -2.84 16 10 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 11 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 15 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.52 7.57 7.64 -10.56 -0.08 7.49 16 20 O -0.47 -8.00 17.76 5.60 0.10 -7.90 16 21 C 0.09 0.88 4.05 -68.21 -0.28 0.60 16 22 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 23 C -0.15 -1.05 8.72 37.15 0.32 -0.73 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.43 6.32 -51.93 -0.33 0.10 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.62 8.00 -51.93 -0.42 1.21 16 32 H 0.09 1.71 7.86 -51.93 -0.41 1.30 16 33 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.38 7.04 -51.93 -0.37 0.02 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -34.42 336.87 -7.66 -42.07 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -6.55 Total: -5.51 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.30 Total: 3.08 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.05 Total: -43.77 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.19 Total: -18.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.42 -7.66 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349068201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.065 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds