Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34524 * 126.68974 * 90.02408 * 4 3 2 6 6 O 1.21541 * 123.77325 * 359.96370 * 5 4 3 7 7 N 1.33788 * 112.46043 * 179.97438 * 5 4 3 8 8 C 1.46495 * 124.18022 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47136 * 89.97123 * 8 7 5 10 10 C 1.53004 * 109.46960 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46816 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00192 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99681 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00151 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99714 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47017 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46873 * 120.00044 * 15 13 11 18 18 H 1.48501 * 109.47147 * 239.99962 * 15 13 11 19 19 C 1.34764 * 111.64313 * 359.97438 * 7 5 4 20 20 O 1.21236 * 127.15832 * 180.02562 * 19 7 5 21 21 C 1.47311 * 126.69075 * 269.71381 * 4 3 2 22 22 H 1.09000 * 110.59690 * 298.55823 * 21 4 3 23 23 C 1.52992 * 110.59894 * 61.50629 * 21 4 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09001 * 109.47508 * 209.97226 * 8 7 5 32 32 H 1.09003 * 109.47601 * 329.97366 * 8 7 5 33 33 H 1.08992 * 109.47369 * 299.99907 * 9 8 7 34 34 H 1.09001 * 109.46907 * 60.00423 * 9 8 7 35 35 H 1.09004 * 109.46929 * 299.99668 * 10 9 8 36 36 H 1.08990 * 109.47366 * 60.00118 * 10 9 8 37 37 H 0.97003 * 119.99868 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47435 * 60.00378 * 23 21 4 39 39 H 1.09004 * 109.47365 * 180.02562 * 23 21 4 40 40 H 1.08998 * 109.47494 * 299.99853 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 1.4433 -1.0797 6 8 3.9013 1.4432 -2.2249 7 7 5.6052 1.4437 -0.7514 8 6 6.7005 1.4450 -1.7243 9 6 7.0805 2.8880 -2.0625 10 6 8.2240 2.8893 -3.0791 11 6 8.5987 4.3106 -3.4117 12 1 8.0736 5.1309 -2.9450 13 6 9.6113 4.5637 -4.3126 14 7 10.2505 3.5649 -4.8812 15 14 10.0754 6.3255 -4.7254 16 1 9.2122 7.2578 -3.9566 17 1 11.4975 6.5596 -4.3677 18 1 9.8857 6.5596 -6.1795 19 6 5.7797 1.4439 0.5849 20 8 6.8326 1.4448 1.1860 21 6 4.3857 1.4484 1.1802 22 1 4.2238 2.3474 1.7749 23 6 4.1599 0.1938 2.0263 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 7.5637 0.9318 -1.3004 32 1 6.3816 0.9313 -2.6312 33 1 6.2175 3.4013 -2.4864 34 1 7.3996 3.4018 -1.1556 35 1 9.0873 2.3760 -2.6555 36 1 7.9047 2.3758 -3.9858 37 1 10.9626 3.7431 -5.5153 38 1 4.3767 -0.6915 1.4284 39 1 4.8193 0.2171 2.8939 40 1 3.1226 0.1621 2.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349068201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -84.683372 kcal Electronic energy + Delta-G solvation = -20789.207284 eV Core-core repulsion = 17603.405547 eV Total energy + Delta-G solvation = -3185.801737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.48870 -39.77199 -37.99158 -37.17394 -35.93083 -34.68428 -33.17725 -31.67694 -29.43964 -27.30714 -25.93002 -25.08994 -23.01227 -22.60368 -22.25035 -21.18380 -18.79394 -18.31061 -18.10960 -17.37189 -16.89259 -16.55472 -16.17862 -15.76616 -15.67498 -15.47130 -15.36316 -14.67279 -14.35861 -14.08782 -13.90016 -13.48648 -13.37632 -13.10009 -12.92989 -12.89809 -12.74978 -12.73619 -12.52942 -12.15107 -12.05864 -11.74820 -11.64394 -11.44106 -11.39423 -11.16072 -10.76218 -10.60085 -10.00542 -8.23942 -6.35503 0.55787 1.03728 1.37781 1.38580 1.52038 1.89021 1.97223 2.38730 2.93464 3.09158 3.59112 3.85111 3.94365 4.03970 4.09888 4.13876 4.27863 4.33188 4.38592 4.40761 4.64220 4.67935 4.72595 4.74707 4.94652 4.95763 5.01203 5.03224 5.12818 5.25789 5.32740 5.38260 5.42199 5.54948 5.61234 5.76775 6.10176 6.17703 6.32433 6.78954 6.99080 7.33460 8.88290 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.003877 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.659394 B = 7220.050399 C = 7684.520928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.144 3.856 4 N -0.611 5.611 5 C 0.690 3.310 6 O -0.582 6.582 7 N -0.581 5.581 8 C 0.125 3.875 9 C -0.103 4.103 10 C 0.030 3.970 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.930 5.930 15 Si 0.968 3.032 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.515 3.485 20 O -0.498 6.498 21 C 0.101 3.899 22 H 0.160 0.840 23 C -0.142 4.142 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.001 0.999 36 H -0.002 1.002 37 H 0.265 0.735 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.293 -7.203 17.171 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.349 5.349 5 C 0.393 3.607 6 O -0.458 6.458 7 N -0.325 5.325 8 C 0.004 3.996 9 C -0.142 4.142 10 C -0.008 4.008 11 C -0.584 4.584 12 H 0.074 0.926 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.201 1.201 19 C 0.304 3.696 20 O -0.369 6.369 21 C -0.005 4.005 22 H 0.177 0.823 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.908 -7.250 16.735 26.999 hybrid contribution 0.889 0.677 -1.004 1.502 sum -19.019 -6.573 15.731 25.542 Atomic orbital electron populations 1.21669 0.93382 1.02585 1.02718 1.22010 0.97461 0.96154 1.02415 1.21733 0.72377 0.98317 1.05070 1.48002 1.07031 1.75813 1.04095 1.16177 0.81048 0.77692 0.85794 1.90946 1.77463 1.56690 1.20723 1.46663 1.08200 1.67717 1.09932 1.21679 0.87551 0.98792 0.91562 1.21681 0.98726 0.94570 0.99194 1.18898 0.92529 0.96234 0.93136 1.21631 1.18246 0.93363 1.25195 0.92562 1.25989 0.95994 1.02102 0.95662 1.70091 1.24084 1.33129 1.29730 0.85356 0.78231 0.79049 0.78150 1.18804 1.20006 1.20115 1.21657 0.92742 0.73509 0.81706 1.90788 1.32450 1.47162 1.66530 1.22370 0.83574 1.05764 0.88763 0.82334 1.22020 1.05795 0.92979 0.99200 0.92043 0.90468 0.93090 0.89746 0.94303 0.90782 0.85524 0.88768 0.89522 0.93575 0.93120 0.98079 0.98380 0.92572 0.92732 0.88857 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.14 -1.72 6.14 30.59 0.19 -1.53 16 3 C 0.14 1.96 5.98 86.38 0.52 2.47 16 4 N -0.61 -12.46 2.74 -817.80 -2.24 -14.70 16 5 C 0.69 21.84 8.31 179.44 1.49 23.33 16 6 O -0.58 -23.11 17.15 -3.84 -0.07 -23.18 16 7 N -0.58 -19.10 2.60 -773.12 -2.01 -21.12 16 8 C 0.13 4.83 5.70 86.38 0.49 5.32 16 9 C -0.10 -4.70 5.48 30.60 0.17 -4.54 16 10 C 0.03 1.65 4.97 29.85 0.15 1.80 16 11 C -0.55 -32.68 9.11 25.60 0.23 -32.45 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.03 5.46 84.66 0.46 0.50 16 14 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 15 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C 0.51 14.45 7.64 87.94 0.67 15.12 16 20 O -0.50 -16.84 17.76 -2.89 -0.05 -16.89 16 21 C 0.10 1.68 4.05 44.37 0.18 1.86 16 22 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 23 C -0.14 -1.47 8.72 71.98 0.63 -0.84 16 24 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 0.75 6.32 -2.39 -0.02 0.73 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.28 8.03 -2.39 -0.02 1.26 16 30 H 0.13 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.09 3.52 8.00 -2.39 -0.02 3.50 16 32 H 0.09 3.41 7.86 -2.39 -0.02 3.39 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.11 0.47 7.04 -2.39 -0.02 0.46 16 Total: -1.00 -77.69 336.87 4.83 -72.86 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.01 Total: 2.52 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.89 Total: 10.49 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.97 Total: -93.54 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.12 Total: -40.07 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.69 4.83 -72.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349068201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.828 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds