Wall clock time and date at job start Mon Mar 30 2020 01:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46700 * 2 1 4 4 N 1.46504 * 109.46704 * 177.10973 * 3 2 1 5 5 C 1.34529 * 126.68873 * 93.40067 * 4 3 2 6 6 O 1.21539 * 123.76807 * 0.03033 * 5 4 3 7 7 N 1.33788 * 112.45725 * 179.86981 * 5 4 3 8 8 C 1.46499 * 124.17449 * 180.13787 * 7 5 4 9 9 C 1.53001 * 109.47419 * 270.30432 * 8 7 5 10 10 C 1.50695 * 109.47711 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99495 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00711 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99591 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00449 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47214 * 60.00023 * 14 12 10 16 16 H 1.48511 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47390 * 299.99897 * 14 12 10 18 18 C 1.34765 * 111.64466 * 0.41207 * 7 5 4 19 19 O 1.21233 * 127.15778 * 179.73024 * 18 7 5 20 20 C 1.47309 * 126.69515 * 273.71119 * 4 3 2 21 21 H 1.08996 * 110.59587 * 61.27858 * 20 4 3 22 22 C 1.53004 * 110.59629 * 298.49524 * 20 4 3 23 23 C 1.53000 * 109.47237 * 174.59301 * 22 20 4 24 24 H 1.08998 * 109.47550 * 299.99376 * 1 2 3 25 25 H 1.09007 * 109.47019 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47568 * 60.00307 * 1 2 3 27 27 H 1.08999 * 109.47053 * 120.00231 * 2 1 3 28 28 H 1.09002 * 109.46892 * 240.00348 * 2 1 3 29 29 H 1.08998 * 109.47350 * 297.10873 * 3 2 1 30 30 H 1.08997 * 109.47174 * 57.11910 * 3 2 1 31 31 H 1.08994 * 109.47500 * 30.30618 * 8 7 5 32 32 H 1.09005 * 109.46986 * 150.30677 * 8 7 5 33 33 H 1.09007 * 109.46845 * 300.00256 * 9 8 7 34 34 H 1.08996 * 109.47166 * 59.99668 * 9 8 7 35 35 H 0.97002 * 120.00151 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.46942 * 294.59027 * 22 20 4 37 37 H 1.08999 * 109.47571 * 54.58602 * 22 20 4 38 38 H 1.08999 * 109.47216 * 186.21957 * 23 22 20 39 39 H 1.09004 * 109.46868 * 306.21444 * 23 22 20 40 40 H 1.09001 * 109.47417 * 66.21138 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5033 1.4431 0.0696 5 6 4.3574 1.4893 -0.9687 6 8 4.0056 1.5384 -2.1311 7 7 5.6371 1.4787 -0.5787 8 6 6.7776 1.5240 -1.4970 9 6 7.1770 0.0990 -1.8852 10 6 8.3506 0.1456 -2.8294 11 1 8.7700 1.0967 -3.1229 12 6 8.8896 -1.0257 -3.3177 13 7 8.3797 -2.1838 -2.9591 14 14 10.3439 -0.9678 -4.4885 15 1 11.4889 -0.2962 -3.8228 16 1 10.7315 -2.3510 -4.8652 17 1 9.9671 -0.2102 -5.7089 18 6 5.7474 1.4150 0.7629 19 8 6.7702 1.3857 1.4130 20 6 4.3265 1.3868 1.2900 21 1 4.1365 0.4642 1.8384 22 6 4.0572 2.6037 2.1774 23 6 4.8209 2.4533 3.4947 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.7195 1.9412 -0.9147 30 1 1.6350 1.9710 0.8630 31 1 6.5012 2.0806 -2.3925 32 1 7.6183 2.0165 -1.0082 33 1 7.4535 -0.4576 -0.9896 34 1 6.3364 -0.3935 -2.3739 35 1 8.7587 -3.0079 -3.3029 36 1 4.3896 3.5071 1.6659 37 1 2.9891 2.6747 2.3827 38 1 4.5437 3.2629 4.1699 39 1 4.5703 1.4964 3.9527 40 1 5.8926 2.4933 3.3000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349122155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:23 Heat of formation + Delta-G solvation = -63.303288 kcal Electronic energy + Delta-G solvation = -21199.897843 eV Core-core repulsion = 18015.023216 eV Total energy + Delta-G solvation = -3184.874627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10023 -38.30725 -36.75370 -35.45865 -34.39098 -33.27398 -32.24055 -30.11069 -27.53693 -26.08597 -24.88955 -23.02564 -22.36044 -21.36236 -20.85905 -19.69390 -17.39718 -16.66941 -16.28300 -16.10143 -15.64056 -14.92519 -14.68407 -14.59279 -14.46861 -14.11781 -13.65636 -13.31187 -13.11207 -12.91905 -12.42469 -12.33605 -12.24599 -12.05266 -11.74796 -11.55674 -11.48790 -11.28750 -10.92834 -10.86687 -10.81653 -10.39569 -10.10235 -10.04666 -9.65007 -9.24096 -9.01024 -8.74433 -8.37121 -6.02117 -4.06003 1.96669 2.39485 3.21614 3.35173 3.38747 3.41202 3.42944 4.17440 4.46029 4.53004 4.65225 4.81228 4.86137 5.04665 5.10819 5.16540 5.23603 5.34397 5.44948 5.49958 5.60880 5.66453 5.73523 5.85314 5.87852 5.97059 6.06817 6.09382 6.17121 6.28165 6.34031 6.64030 6.69294 7.45452 7.59368 7.74442 7.75802 7.94718 8.29577 8.47535 8.98868 9.57885 11.09632 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.005079 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.013892 B = 5511.173602 C = 6356.712287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.153 3.847 4 N -0.630 5.630 5 C 0.699 3.301 6 O -0.538 6.538 7 N -0.569 5.569 8 C 0.120 3.880 9 C 0.013 3.987 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.524 3.476 19 O -0.467 6.467 20 C 0.091 3.909 21 H 0.120 0.880 22 C -0.115 4.115 23 C -0.156 4.156 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 8.063 11.910 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.369 5.369 5 C 0.402 3.598 6 O -0.411 6.411 7 N -0.313 5.313 8 C 0.001 3.999 9 C -0.025 4.025 10 C -0.561 4.561 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.310 3.690 19 O -0.337 6.337 20 C -0.017 4.017 21 H 0.137 0.863 22 C -0.154 4.154 23 C -0.214 4.214 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.525 7.899 11.511 20.146 hybrid contribution 0.781 -0.273 -0.665 1.061 sum -13.744 7.625 10.846 19.097 Atomic orbital electron populations 1.21678 0.94879 1.02129 1.01848 1.21993 0.96196 0.97180 1.03279 1.21323 0.74880 0.97213 1.03397 1.47760 1.05919 1.77861 1.05352 1.15963 0.80960 0.77604 0.85304 1.90957 1.79144 1.54446 1.16592 1.46749 1.08598 1.66570 1.09341 1.22189 0.83632 1.03163 0.90934 1.19398 0.97050 0.88964 0.97065 1.20961 1.14644 0.92834 1.27632 0.92293 1.24991 0.97282 0.95372 0.96541 1.69969 1.41390 0.97395 1.44369 0.86562 0.82601 0.77051 0.81232 1.20097 1.21232 1.20092 1.20674 0.90817 0.74997 0.82533 1.90762 1.33897 1.46050 1.63022 1.22194 0.88804 1.02254 0.88436 0.86298 1.21614 1.01761 0.96079 0.95896 1.21803 1.01924 1.02019 0.95625 0.92663 0.92330 0.92396 0.91629 0.90992 0.89291 0.90085 0.89798 0.89935 0.96101 0.95833 0.92811 0.91078 0.90270 0.92114 0.92204 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.15 -1.46 6.26 -26.73 -0.17 -1.62 16 3 C 0.15 1.55 6.04 -4.04 -0.02 1.53 16 4 N -0.63 -8.60 2.74 -172.41 -0.47 -9.08 16 5 C 0.70 13.04 8.31 -88.02 -0.73 12.31 16 6 O -0.54 -11.82 17.11 5.33 0.09 -11.73 16 7 N -0.57 -11.10 2.60 -120.73 -0.31 -11.41 16 8 C 0.12 2.66 5.63 -4.04 -0.02 2.63 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.21 16 10 C -0.52 -15.09 9.11 -34.45 -0.31 -15.41 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 14 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.52 9.07 7.48 -10.56 -0.08 8.99 16 19 O -0.47 -9.11 16.31 5.60 0.09 -9.02 16 20 C 0.09 1.13 3.44 -68.21 -0.23 0.90 16 21 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 22 C -0.11 -1.08 5.63 -26.73 -0.15 -1.23 16 23 C -0.16 -1.41 9.67 37.16 0.36 -1.05 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 30 H 0.08 0.57 7.23 -51.93 -0.38 0.19 16 31 H 0.08 1.84 7.87 -51.93 -0.41 1.43 16 32 H 0.08 1.76 8.00 -51.93 -0.42 1.34 16 33 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.08 0.56 7.25 -51.93 -0.38 0.18 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.83 6.74 -51.93 -0.35 0.47 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -34.12 335.81 -7.60 -41.72 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.53 Total: -4.00 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.24 Total: 8.18 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.05 Total: -47.21 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.12 -7.60 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349122155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.584 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds