Wall clock time and date at job start Mon Mar 30 2020 01:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46700 * 2 1 4 4 N 1.46504 * 109.46704 * 177.10973 * 3 2 1 5 5 C 1.34529 * 126.68873 * 93.40067 * 4 3 2 6 6 O 1.21539 * 123.76807 * 0.03033 * 5 4 3 7 7 N 1.33788 * 112.45725 * 179.86981 * 5 4 3 8 8 C 1.46499 * 124.17449 * 180.13787 * 7 5 4 9 9 C 1.53001 * 109.47419 * 270.30432 * 8 7 5 10 10 C 1.50695 * 109.47711 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99495 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00711 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99591 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00449 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47214 * 60.00023 * 14 12 10 16 16 H 1.48511 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47390 * 299.99897 * 14 12 10 18 18 C 1.34765 * 111.64466 * 0.41207 * 7 5 4 19 19 O 1.21233 * 127.15778 * 179.73024 * 18 7 5 20 20 C 1.47309 * 126.69515 * 273.71119 * 4 3 2 21 21 H 1.08996 * 110.59587 * 61.27858 * 20 4 3 22 22 C 1.53004 * 110.59629 * 298.49524 * 20 4 3 23 23 C 1.53000 * 109.47237 * 174.59301 * 22 20 4 24 24 H 1.08998 * 109.47550 * 299.99376 * 1 2 3 25 25 H 1.09007 * 109.47019 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47568 * 60.00307 * 1 2 3 27 27 H 1.08999 * 109.47053 * 120.00231 * 2 1 3 28 28 H 1.09002 * 109.46892 * 240.00348 * 2 1 3 29 29 H 1.08998 * 109.47350 * 297.10873 * 3 2 1 30 30 H 1.08997 * 109.47174 * 57.11910 * 3 2 1 31 31 H 1.08994 * 109.47500 * 30.30618 * 8 7 5 32 32 H 1.09005 * 109.46986 * 150.30677 * 8 7 5 33 33 H 1.09007 * 109.46845 * 300.00256 * 9 8 7 34 34 H 1.08996 * 109.47166 * 59.99668 * 9 8 7 35 35 H 0.97002 * 120.00151 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.46942 * 294.59027 * 22 20 4 37 37 H 1.08999 * 109.47571 * 54.58602 * 22 20 4 38 38 H 1.08999 * 109.47216 * 186.21957 * 23 22 20 39 39 H 1.09004 * 109.46868 * 306.21444 * 23 22 20 40 40 H 1.09001 * 109.47417 * 66.21138 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5033 1.4431 0.0696 5 6 4.3574 1.4893 -0.9687 6 8 4.0056 1.5384 -2.1311 7 7 5.6371 1.4787 -0.5787 8 6 6.7776 1.5240 -1.4970 9 6 7.1770 0.0990 -1.8852 10 6 8.3506 0.1456 -2.8294 11 1 8.7700 1.0967 -3.1229 12 6 8.8896 -1.0257 -3.3177 13 7 8.3797 -2.1838 -2.9591 14 14 10.3439 -0.9678 -4.4885 15 1 11.4889 -0.2962 -3.8228 16 1 10.7315 -2.3510 -4.8652 17 1 9.9671 -0.2102 -5.7089 18 6 5.7474 1.4150 0.7629 19 8 6.7702 1.3857 1.4130 20 6 4.3265 1.3868 1.2900 21 1 4.1365 0.4642 1.8384 22 6 4.0572 2.6037 2.1774 23 6 4.8209 2.4533 3.4947 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.7195 1.9412 -0.9147 30 1 1.6350 1.9710 0.8630 31 1 6.5012 2.0806 -2.3925 32 1 7.6183 2.0165 -1.0082 33 1 7.4535 -0.4576 -0.9896 34 1 6.3364 -0.3935 -2.3739 35 1 8.7587 -3.0079 -3.3029 36 1 4.3896 3.5071 1.6659 37 1 2.9891 2.6747 2.3827 38 1 4.5437 3.2629 4.1699 39 1 4.5703 1.4964 3.9527 40 1 5.8926 2.4933 3.3000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349122155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:23 Heat of formation + Delta-G solvation = -84.989662 kcal Electronic energy + Delta-G solvation = -21200.838235 eV Core-core repulsion = 18015.023216 eV Total energy + Delta-G solvation = -3185.815019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47725 -39.75951 -37.99962 -37.02574 -35.61024 -34.94090 -33.46540 -31.87493 -28.74042 -27.31367 -26.54158 -24.29814 -23.65062 -22.82663 -21.87314 -21.12059 -19.02796 -18.21168 -17.98791 -17.46280 -16.83378 -16.53958 -16.20522 -15.90884 -15.56129 -15.36270 -14.97180 -14.77174 -14.38432 -14.32141 -13.96956 -13.62949 -13.10393 -13.06823 -12.87367 -12.85773 -12.75776 -12.53736 -12.26960 -12.14123 -12.12151 -12.06987 -11.81458 -11.60076 -11.44009 -10.99764 -10.69102 -10.63970 -9.97472 -8.27857 -6.41680 0.58115 1.08659 1.38617 1.43275 1.50970 1.93817 1.99866 2.38149 2.94719 3.06184 3.57698 3.74745 3.97661 4.07673 4.08363 4.29633 4.37123 4.38657 4.41032 4.47113 4.50597 4.66249 4.67768 4.81132 4.90394 4.96597 5.08302 5.15515 5.21436 5.27272 5.30434 5.33604 5.42515 5.46821 5.55330 5.67971 6.04232 6.14780 6.36719 6.71731 7.02146 7.28372 8.85073 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.005079 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.013892 B = 5511.173602 C = 6356.712287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C 0.146 3.854 4 N -0.612 5.612 5 C 0.690 3.310 6 O -0.583 6.583 7 N -0.583 5.583 8 C 0.135 3.865 9 C 0.026 3.974 10 C -0.547 4.547 11 H 0.071 0.929 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.976 3.024 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.513 3.487 19 O -0.495 6.495 20 C 0.102 3.898 21 H 0.147 0.853 22 C -0.106 4.106 23 C -0.154 4.154 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.090 0.910 33 H -0.010 1.010 34 H -0.014 1.014 35 H 0.266 0.734 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 9.230 13.410 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.027 3.973 4 N -0.349 5.349 5 C 0.392 3.608 6 O -0.459 6.459 7 N -0.326 5.326 8 C 0.014 3.986 9 C -0.011 4.011 10 C -0.586 4.586 11 H 0.089 0.911 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.189 1.189 18 C 0.302 3.698 19 O -0.367 6.367 20 C -0.004 4.004 21 H 0.164 0.836 22 C -0.144 4.144 23 C -0.212 4.212 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.008 0.992 34 H 0.004 0.996 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.767 9.081 13.069 22.403 hybrid contribution 1.099 -0.669 -1.068 1.672 sum -14.668 8.412 12.002 20.735 Atomic orbital electron populations 1.21646 0.92677 1.02587 1.03045 1.21968 0.98049 0.96606 1.01816 1.21748 0.72394 0.97893 1.05278 1.47970 1.06880 1.75866 1.04226 1.16207 0.81150 0.77644 0.85766 1.90914 1.79697 1.56735 1.18599 1.46767 1.08513 1.67229 1.10141 1.21698 0.85253 0.99711 0.91924 1.19152 0.95491 0.91321 0.95178 1.21435 1.15288 0.93679 1.28152 0.91069 1.26068 1.00568 0.94752 0.98347 1.70118 1.43157 0.98282 1.45735 0.85338 0.78513 0.77455 0.78768 1.18672 1.20634 1.18914 1.21592 0.92888 0.73780 0.81576 1.90742 1.35594 1.47089 1.63228 1.22430 0.84626 1.05338 0.88014 0.83608 1.21680 1.04241 0.93614 0.94889 1.21794 0.99892 1.03654 0.95847 0.90044 0.92321 0.92587 0.90711 0.94901 0.90134 0.85166 0.89863 0.89167 0.99199 0.99600 0.92531 0.91846 0.86195 0.89846 0.91042 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.15 -2.63 6.26 30.59 0.19 -2.44 16 3 C 0.15 2.58 6.04 86.38 0.52 3.10 16 4 N -0.61 -15.85 2.74 -817.80 -2.24 -18.09 16 5 C 0.69 26.33 8.31 179.44 1.49 27.82 16 6 O -0.58 -26.73 17.11 -3.84 -0.07 -26.79 16 7 N -0.58 -23.52 2.60 -773.14 -2.01 -25.53 16 8 C 0.13 6.27 5.63 86.38 0.49 6.75 16 9 C 0.03 1.52 5.30 29.85 0.16 1.68 16 10 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 11 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 12 C 0.00 0.05 5.46 84.65 0.46 0.52 16 13 N -0.93 -59.19 13.29 21.45 0.28 -58.91 16 14 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 15 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 18 C 0.51 17.90 7.48 87.94 0.66 18.56 16 19 O -0.49 -19.71 16.31 -2.88 -0.05 -19.76 16 20 C 0.10 2.33 3.44 44.37 0.15 2.48 16 21 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 22 C -0.11 -1.60 5.63 30.60 0.17 -1.42 16 23 C -0.15 -2.31 9.67 71.98 0.70 -1.61 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.63 7.97 -2.39 -0.02 1.61 16 30 H 0.13 1.10 7.23 -2.39 -0.02 1.08 16 31 H 0.08 3.83 7.87 -2.39 -0.02 3.82 16 32 H 0.09 3.99 8.00 -2.38 -0.02 3.98 16 33 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 34 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.06 1.10 8.12 -2.38 -0.02 1.09 16 37 H 0.12 0.94 7.25 -2.39 -0.02 0.92 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.89 6.74 -2.39 -0.02 0.87 16 Total: -1.00 -79.31 335.81 4.89 -74.42 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.01 Total: 5.10 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 5.94 Total: 22.03 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.97 Total: -102.54 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.11 Total: -46.55 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.31 4.89 -74.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349122155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds