Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 N 1.46506 * 109.46693 * 179.97438 * 3 2 1 5 5 C 1.46770 * 124.34720 * 90.00438 * 4 3 2 6 6 C 1.54473 * 105.46948 * 196.99313 * 5 4 3 7 7 H 1.09000 * 110.97314 * 92.73968 * 6 5 4 8 8 C 1.50702 * 110.97038 * 216.46102 * 6 5 4 9 9 O 1.21283 * 119.99478 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00430 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99969 * 0.02562 * 10 8 6 12 12 C 1.46499 * 120.00036 * 179.72648 * 10 8 6 13 13 C 1.50703 * 109.47126 * 270.27831 * 12 10 8 14 14 H 1.08002 * 119.99820 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99889 * 180.02562 * 13 12 10 16 16 N 1.31520 * 119.99905 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00302 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47082 * 89.99861 * 17 15 13 19 19 H 1.48492 * 109.47090 * 210.00394 * 17 15 13 20 20 H 1.48499 * 109.46812 * 330.00449 * 17 15 13 21 21 C 1.54632 * 101.76951 * 334.58454 * 6 5 4 22 22 C 1.34416 * 124.35178 * 269.97488 * 4 3 2 23 23 O 1.21285 * 124.94113 * 359.62024 * 22 4 3 24 24 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47019 * 300.00402 * 1 2 3 26 26 H 1.09005 * 109.46600 * 60.00021 * 1 2 3 27 27 H 1.08991 * 109.47014 * 240.00275 * 2 1 3 28 28 H 1.08995 * 109.46645 * 119.99854 * 2 1 3 29 29 H 1.09001 * 109.47348 * 60.00421 * 3 2 1 30 30 H 1.08993 * 109.47846 * 299.99689 * 3 2 1 31 31 H 1.08994 * 110.24497 * 77.99627 * 5 4 3 32 32 H 1.08997 * 110.31363 * 316.03301 * 5 4 3 33 33 H 1.08999 * 109.46892 * 269.72362 * 11 10 8 34 34 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 35 35 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 36 36 H 1.08994 * 109.47173 * 30.28203 * 12 10 8 37 37 H 1.09005 * 109.47077 * 150.28374 * 12 10 8 38 38 H 0.96998 * 119.99775 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.48719 * 143.47639 * 21 6 5 40 40 H 1.09000 * 110.48371 * 266.12103 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4424 -1.2108 6 6 5.7414 1.0073 -0.7471 7 1 5.8679 -0.0710 -0.8433 8 6 6.8122 1.7433 -1.5105 9 8 6.5038 2.5532 -2.3590 10 7 8.1123 1.5023 -1.2497 11 6 8.4847 0.5244 -0.2244 12 6 9.1531 2.2135 -1.9961 13 6 9.5098 1.4288 -3.2323 14 1 9.0113 0.4936 -3.4408 15 6 10.4733 1.9041 -4.0965 16 7 10.7849 1.2191 -5.1750 17 14 11.3360 3.5212 -3.7354 18 1 12.5495 3.2634 -2.9192 19 1 11.7271 4.1696 -5.0128 20 1 10.4171 4.4161 -2.9870 21 6 5.7295 1.4333 0.7394 22 6 4.2630 1.4431 1.1107 23 8 3.8337 1.4504 2.2450 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.3710 2.4426 -1.6423 32 1 3.9400 0.7327 -1.9384 33 1 8.5770 1.0256 0.7391 34 1 7.7162 -0.2460 -0.1609 35 1 9.4378 0.0661 -0.4884 36 1 8.7851 3.1981 -2.2843 37 1 10.0377 2.3254 -1.3691 38 1 11.4625 1.5537 -5.7832 39 1 6.2723 0.7100 1.3479 40 1 6.1588 2.4286 0.8544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411181334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -71.263401 kcal Electronic energy + Delta-G solvation = -20857.848522 eV Core-core repulsion = 17672.628719 eV Total energy + Delta-G solvation = -3185.219804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80332 -38.92325 -36.43124 -35.09242 -34.87872 -32.64761 -31.57115 -28.63091 -27.69996 -26.50408 -25.97205 -23.58026 -21.98437 -21.57165 -19.50605 -18.57603 -17.27088 -16.94749 -16.81570 -15.91848 -15.62099 -14.96928 -14.89611 -14.61407 -14.02601 -13.79738 -13.77558 -13.49133 -13.01677 -12.77930 -12.49922 -12.34251 -12.32765 -12.05033 -12.04016 -11.62254 -11.59781 -11.44514 -11.30162 -10.95985 -10.94302 -10.57024 -10.16145 -9.95039 -9.60368 -9.16323 -8.77381 -8.64232 -7.82263 -6.13735 -4.13219 2.50774 2.85506 3.13054 3.23754 3.32138 3.35924 3.65146 4.23356 4.35362 4.38014 4.72659 4.72740 4.79342 4.89926 5.02099 5.14095 5.20446 5.24394 5.38317 5.42957 5.49225 5.52584 5.56630 5.71865 5.76037 5.77669 5.85250 5.93612 6.00426 6.10736 6.43736 6.58394 6.89400 7.00848 7.20971 7.54639 8.08315 8.10762 8.39961 8.78479 8.89557 9.46078 10.99510 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.004071 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.444656 B = 6875.783475 C = 7190.155670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.619 5.619 5 C 0.116 3.884 6 C -0.122 4.122 7 H 0.113 0.887 8 C 0.519 3.481 9 O -0.535 6.535 10 N -0.592 5.592 11 C 0.079 3.921 12 C 0.215 3.785 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.143 4.143 22 C 0.521 3.479 23 O -0.537 6.537 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.109 0.891 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 -2.227 11.300 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.352 5.352 5 C -0.007 4.007 6 C -0.144 4.144 7 H 0.131 0.869 8 C 0.304 3.696 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.065 4.065 12 C 0.094 3.906 13 C -0.570 4.570 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.183 4.183 22 C 0.309 3.691 23 O -0.414 6.414 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.477 -1.773 11.272 18.433 hybrid contribution 0.691 0.552 -0.100 0.890 sum -13.786 -1.221 11.172 17.787 Atomic orbital electron populations 1.21692 0.95022 1.02011 1.01963 1.21918 0.96227 0.97155 1.02755 1.21439 0.77868 0.97093 1.03237 1.48368 1.06245 1.73125 1.07482 1.22028 0.87986 1.04098 0.86588 1.22240 0.94797 1.02406 0.95007 0.86870 1.19765 0.83230 0.83246 0.83337 1.90684 1.81528 1.35609 1.33386 1.47789 1.05940 1.40998 1.37555 1.21776 1.02146 0.91952 0.90602 1.19710 0.85277 0.93756 0.91808 1.21311 1.21658 1.08546 1.05457 0.90726 1.24860 0.96435 0.97014 0.94678 1.69894 1.32263 1.38762 1.12551 0.86859 0.80207 0.84469 0.78286 1.20067 1.20912 1.18815 1.22365 0.95044 1.05399 0.95500 1.20836 0.89099 0.74881 0.84323 1.90706 1.78681 1.50914 1.21124 0.92410 0.92532 0.92498 0.91557 0.91579 0.90066 0.90177 0.88754 0.89832 0.93274 0.92021 0.90372 0.93981 0.95480 0.92498 0.87251 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.25 6.26 -26.73 -0.17 -1.42 16 3 C 0.13 1.24 5.94 -4.04 -0.02 1.21 16 4 N -0.62 -7.39 2.93 -172.42 -0.51 -7.89 16 5 C 0.12 1.42 6.71 -3.12 -0.02 1.40 16 6 C -0.12 -1.59 2.55 -90.14 -0.23 -1.82 16 7 H 0.11 1.27 7.25 -51.93 -0.38 0.89 16 8 C 0.52 9.52 6.95 -10.99 -0.08 9.44 16 9 O -0.53 -12.02 15.09 5.55 0.08 -11.94 16 10 N -0.59 -11.23 2.86 -182.95 -0.52 -11.75 16 11 C 0.08 1.09 9.20 59.85 0.55 1.65 16 12 C 0.21 5.01 4.23 -5.19 -0.02 4.99 16 13 C -0.53 -14.75 9.94 -34.44 -0.34 -15.10 16 14 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 17 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 21 C -0.14 -1.69 5.48 -26.74 -0.15 -1.84 16 22 C 0.52 7.10 8.02 -10.86 -0.09 7.02 16 23 O -0.54 -8.97 17.59 5.55 0.10 -8.87 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.32 6.96 -51.93 -0.36 0.96 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.69 6.09 -51.93 -0.32 0.37 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 37 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.11 1.08 7.55 -51.93 -0.39 0.69 16 40 H 0.11 1.33 7.89 -51.93 -0.41 0.92 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -34.30 328.51 -6.47 -40.77 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.38 Total: -2.09 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.29 Total: 6.81 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.25 Total: -45.96 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.18 Total: -20.81 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.30 -6.47 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.495 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds