Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 N 1.46506 * 109.46693 * 179.97438 * 3 2 1 5 5 C 1.46770 * 124.34720 * 90.00438 * 4 3 2 6 6 C 1.54473 * 105.46948 * 196.99313 * 5 4 3 7 7 H 1.09000 * 110.97314 * 92.73968 * 6 5 4 8 8 C 1.50702 * 110.97038 * 216.46102 * 6 5 4 9 9 O 1.21283 * 119.99478 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00430 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99969 * 0.02562 * 10 8 6 12 12 C 1.46499 * 120.00036 * 179.72648 * 10 8 6 13 13 C 1.50703 * 109.47126 * 270.27831 * 12 10 8 14 14 H 1.08002 * 119.99820 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99889 * 180.02562 * 13 12 10 16 16 N 1.31520 * 119.99905 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00302 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47082 * 89.99861 * 17 15 13 19 19 H 1.48492 * 109.47090 * 210.00394 * 17 15 13 20 20 H 1.48499 * 109.46812 * 330.00449 * 17 15 13 21 21 C 1.54632 * 101.76951 * 334.58454 * 6 5 4 22 22 C 1.34416 * 124.35178 * 269.97488 * 4 3 2 23 23 O 1.21285 * 124.94113 * 359.62024 * 22 4 3 24 24 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47019 * 300.00402 * 1 2 3 26 26 H 1.09005 * 109.46600 * 60.00021 * 1 2 3 27 27 H 1.08991 * 109.47014 * 240.00275 * 2 1 3 28 28 H 1.08995 * 109.46645 * 119.99854 * 2 1 3 29 29 H 1.09001 * 109.47348 * 60.00421 * 3 2 1 30 30 H 1.08993 * 109.47846 * 299.99689 * 3 2 1 31 31 H 1.08994 * 110.24497 * 77.99627 * 5 4 3 32 32 H 1.08997 * 110.31363 * 316.03301 * 5 4 3 33 33 H 1.08999 * 109.46892 * 269.72362 * 11 10 8 34 34 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 35 35 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 36 36 H 1.08994 * 109.47173 * 30.28203 * 12 10 8 37 37 H 1.09005 * 109.47077 * 150.28374 * 12 10 8 38 38 H 0.96998 * 119.99775 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.48719 * 143.47639 * 21 6 5 40 40 H 1.09000 * 110.48371 * 266.12103 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4424 -1.2108 6 6 5.7414 1.0073 -0.7471 7 1 5.8679 -0.0710 -0.8433 8 6 6.8122 1.7433 -1.5105 9 8 6.5038 2.5532 -2.3590 10 7 8.1123 1.5023 -1.2497 11 6 8.4847 0.5244 -0.2244 12 6 9.1531 2.2135 -1.9961 13 6 9.5098 1.4288 -3.2323 14 1 9.0113 0.4936 -3.4408 15 6 10.4733 1.9041 -4.0965 16 7 10.7849 1.2191 -5.1750 17 14 11.3360 3.5212 -3.7354 18 1 12.5495 3.2634 -2.9192 19 1 11.7271 4.1696 -5.0128 20 1 10.4171 4.4161 -2.9870 21 6 5.7295 1.4333 0.7394 22 6 4.2630 1.4431 1.1107 23 8 3.8337 1.4504 2.2450 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.3710 2.4426 -1.6423 32 1 3.9400 0.7327 -1.9384 33 1 8.5770 1.0256 0.7391 34 1 7.7162 -0.2460 -0.1609 35 1 9.4378 0.0661 -0.4884 36 1 8.7851 3.1981 -2.2843 37 1 10.0377 2.3254 -1.3691 38 1 11.4625 1.5537 -5.7832 39 1 6.2723 0.7100 1.3479 40 1 6.1588 2.4286 0.8544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411181334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -94.814209 kcal Electronic energy + Delta-G solvation = -20858.869762 eV Core-core repulsion = 17672.628719 eV Total energy + Delta-G solvation = -3186.241043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92324 -40.29208 -37.53154 -36.64653 -35.78427 -34.65012 -32.60451 -30.36947 -28.75895 -27.48466 -27.18076 -25.09782 -23.07236 -22.71200 -20.51839 -19.94276 -19.12578 -18.38505 -17.87690 -17.18971 -16.92528 -16.37088 -16.13564 -15.69376 -15.49678 -14.88525 -14.71263 -14.65358 -14.54042 -14.04862 -13.77320 -13.71821 -13.57818 -13.18216 -13.06691 -12.83164 -12.80975 -12.45700 -12.40325 -12.33833 -12.16134 -11.99996 -11.73145 -11.65458 -11.09639 -10.79981 -10.60996 -9.76681 -9.39402 -8.31963 -6.36867 1.34661 1.38914 1.45996 1.49098 1.69556 1.91546 2.29860 2.33379 3.02521 3.16683 3.35369 3.69571 3.84670 3.99855 4.03840 4.11759 4.33851 4.45820 4.48735 4.54169 4.60635 4.66015 4.70152 4.76581 4.83821 4.87404 4.94233 5.01654 5.04647 5.15310 5.18719 5.32914 5.47919 5.54509 5.60842 6.01976 6.24692 6.64561 6.67601 7.05801 7.22575 7.37715 8.84772 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.004071 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.444656 B = 6875.783475 C = 7190.155670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.613 5.613 5 C 0.119 3.881 6 C -0.108 4.108 7 H 0.140 0.860 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.600 5.600 11 C 0.071 3.929 12 C 0.222 3.778 13 C -0.535 4.535 14 H 0.032 0.968 15 C 0.011 3.989 16 N -0.946 5.946 17 Si 0.946 3.054 18 H -0.253 1.253 19 H -0.285 1.285 20 H -0.254 1.254 21 C -0.134 4.134 22 C 0.517 3.483 23 O -0.571 6.571 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.438 -2.167 12.910 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.002 4.002 4 N -0.345 5.345 5 C -0.004 4.004 6 C -0.130 4.130 7 H 0.158 0.842 8 C 0.300 3.700 9 O -0.466 6.466 10 N -0.331 5.331 11 C -0.071 4.071 12 C 0.100 3.900 13 C -0.574 4.574 14 H 0.050 0.950 15 C -0.187 4.187 16 N -0.586 5.586 17 Si 0.769 3.231 18 H -0.177 1.177 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.174 4.174 22 C 0.306 3.694 23 O -0.451 6.451 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.770 -1.747 12.912 19.696 hybrid contribution 0.705 0.468 -0.641 1.062 sum -14.065 -1.278 12.270 18.708 Atomic orbital electron populations 1.21677 0.93646 1.02612 1.02461 1.21849 0.97378 0.96039 1.02130 1.21644 0.76722 0.98093 1.03741 1.48462 1.07072 1.72100 1.06915 1.21969 0.87914 1.03619 0.86891 1.22142 0.92944 1.02951 0.94947 0.84192 1.20614 0.83839 0.82658 0.82863 1.90658 1.82355 1.37856 1.35734 1.47877 1.05497 1.41643 1.38035 1.22105 1.02660 0.91950 0.90371 1.19365 0.87209 0.92523 0.90938 1.21575 1.20990 1.07428 1.07414 0.94954 1.25834 0.97449 1.01066 0.94348 1.70049 1.33479 1.41050 1.13998 0.85733 0.79592 0.79400 0.78371 1.17727 1.21033 1.17790 1.22370 0.94222 1.06134 0.94631 1.21083 0.89897 0.74400 0.84054 1.90693 1.79316 1.52741 1.22387 0.91775 0.92574 0.91487 0.91104 0.93183 0.90823 0.88425 0.90586 0.88023 0.89928 0.88965 0.91455 0.95963 0.93246 0.92331 0.84474 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.14 -2.16 6.26 30.60 0.19 -1.97 16 3 C 0.12 2.17 5.94 86.38 0.51 2.68 16 4 N -0.61 -13.61 2.93 -818.00 -2.40 -16.01 16 5 C 0.12 2.73 6.71 86.83 0.58 3.31 16 6 C -0.11 -2.56 2.55 -10.48 -0.03 -2.59 16 7 H 0.14 2.62 7.25 -2.39 -0.02 2.60 16 8 C 0.51 18.32 6.95 87.66 0.61 18.93 16 9 O -0.59 -26.62 15.09 -3.04 -0.05 -26.66 16 10 N -0.60 -21.97 2.86 -851.12 -2.43 -24.40 16 11 C 0.07 1.75 9.20 127.77 1.17 2.93 16 12 C 0.22 10.21 4.23 85.63 0.36 10.57 16 13 C -0.54 -30.28 9.94 25.60 0.25 -30.02 16 14 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 15 C 0.01 0.63 5.47 84.65 0.46 1.10 16 16 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 17 Si 0.95 43.18 27.47 68.60 1.88 45.07 16 18 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 21 C -0.13 -2.79 5.48 30.59 0.17 -2.62 16 22 C 0.52 13.17 8.02 87.90 0.71 13.87 16 23 O -0.57 -18.40 17.59 -3.05 -0.05 -18.45 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.08 6.96 -2.39 -0.02 2.07 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.70 6.09 -2.39 -0.01 1.69 16 35 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 36 H 0.02 1.12 6.48 -2.39 -0.02 1.10 16 37 H 0.05 2.06 7.50 -2.38 -0.02 2.04 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.14 2.12 7.55 -2.39 -0.02 2.10 16 40 H 0.11 2.34 7.89 -2.39 -0.02 2.32 16 Total: -1.00 -77.29 328.51 3.92 -73.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.96 Total: 10.20 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.71 Total: 15.09 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.53 Total: -98.62 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.10 Total: -45.11 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -77.29 3.92 -73.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.443 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds