Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 N 1.46506 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34669 * 89.99982 * 4 3 2 6 6 C 1.54480 * 105.54782 * 162.91674 * 5 4 3 7 7 H 1.09000 * 110.97126 * 267.34164 * 6 5 4 8 8 C 1.50706 * 110.97017 * 143.57833 * 6 5 4 9 9 O 1.21277 * 119.99637 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00137 * 180.02562 * 8 6 5 11 11 C 1.46502 * 119.99670 * 359.97438 * 10 8 6 12 12 C 1.46494 * 120.00044 * 180.02562 * 10 8 6 13 13 C 1.50699 * 109.47042 * 89.99625 * 12 10 8 14 14 H 1.08005 * 120.00132 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99740 * 180.02562 * 13 12 10 16 16 N 1.31508 * 120.00173 * 359.97438 * 15 13 12 17 17 Si 1.86811 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47085 * 89.99514 * 17 15 13 19 19 H 1.48499 * 109.46878 * 210.00111 * 17 15 13 20 20 H 1.48501 * 109.46795 * 329.99788 * 17 15 13 21 21 C 1.54861 * 101.66110 * 25.43666 * 6 5 4 22 22 C 1.34415 * 124.35027 * 269.97473 * 4 3 2 23 23 O 1.21288 * 124.94382 * 0.45207 * 22 4 3 24 24 H 1.09007 * 109.47456 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47685 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47339 * 60.00322 * 1 2 3 27 27 H 1.08993 * 109.47257 * 239.99516 * 2 1 3 28 28 H 1.09006 * 109.46814 * 120.00228 * 2 1 3 29 29 H 1.09003 * 109.46934 * 59.99812 * 3 2 1 30 30 H 1.08995 * 109.47116 * 299.99554 * 3 2 1 31 31 H 1.09002 * 110.24740 * 281.96247 * 5 4 3 32 32 H 1.09002 * 110.24616 * 43.87772 * 5 4 3 33 33 H 1.09000 * 109.46790 * 90.00535 * 11 10 8 34 34 H 1.09005 * 109.47091 * 210.00056 * 11 10 8 35 35 H 1.09004 * 109.47303 * 330.00350 * 11 10 8 36 36 H 1.08993 * 109.47219 * 209.99668 * 12 10 8 37 37 H 1.08998 * 109.46934 * 330.00026 * 12 10 8 38 38 H 0.97008 * 120.00085 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.46775 * 216.51886 * 21 6 5 40 40 H 1.08993 * 110.60550 * 93.93039 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3335 1.4422 -1.2107 6 6 5.7415 1.8795 -0.7495 7 1 5.8663 2.9580 -0.8461 8 6 6.8121 1.1442 -1.5139 9 8 6.5035 0.3339 -2.3619 10 7 8.1123 1.3870 -1.2553 11 6 8.4849 2.3663 -0.2313 12 6 9.1529 0.6727 -1.9988 13 6 9.5132 1.4547 -3.2356 14 1 9.0169 2.3905 -3.4465 15 6 10.4764 0.9754 -4.0980 16 7 11.0810 -0.1638 -3.8410 17 14 10.9235 1.9452 -5.6308 18 1 12.0278 2.8868 -5.3162 19 1 11.3594 1.0098 -6.6986 20 1 9.7384 2.7097 -6.0960 21 6 5.7295 1.4534 0.7394 22 6 4.2630 1.4431 1.1107 23 8 3.8337 1.4359 2.2450 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.3715 0.4417 -1.6416 32 1 3.9381 2.1510 -1.9384 33 1 8.5746 1.8668 0.7334 34 1 9.4394 2.8220 -0.4946 35 1 7.7179 3.1385 -0.1708 36 1 10.0361 0.5599 -1.3702 37 1 8.7833 -0.3117 -2.2862 38 1 11.7589 -0.5007 -4.4475 39 1 6.2718 2.1775 1.3474 40 1 6.1598 0.4591 0.8573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411181336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -75.993191 kcal Electronic energy + Delta-G solvation = -20826.320713 eV Core-core repulsion = 17640.895810 eV Total energy + Delta-G solvation = -3185.424903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74163 -38.81877 -36.38338 -34.96925 -34.82955 -32.70601 -31.47486 -28.06025 -27.62661 -26.44110 -25.81808 -23.70610 -22.00682 -21.71885 -19.48618 -18.52110 -17.17270 -16.77326 -16.49357 -15.86520 -15.48858 -14.97582 -14.83817 -14.47480 -14.20784 -13.86947 -13.58794 -13.45819 -12.90192 -12.75672 -12.38461 -12.33460 -12.14800 -11.95956 -11.85722 -11.57347 -11.39050 -11.28804 -11.20757 -10.94197 -10.86959 -10.61631 -10.21081 -9.90386 -9.68899 -9.05820 -8.73718 -8.48384 -7.74809 -6.09169 -4.14394 2.54533 2.88654 3.21552 3.27083 3.34132 3.38133 3.76894 4.28526 4.38277 4.45005 4.77070 4.77756 4.85706 4.94683 5.06875 5.21345 5.24334 5.28444 5.41178 5.44011 5.53472 5.58824 5.60574 5.76648 5.80452 5.86453 5.90190 5.99154 6.05869 6.16504 6.47204 6.96362 7.03836 7.36612 7.44343 7.86436 8.12033 8.16949 8.29356 8.81150 8.96498 9.50932 10.98918 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.004058 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.793648 B = 6897.459144 C = 7366.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.619 5.619 5 C 0.116 3.884 6 C -0.123 4.123 7 H 0.112 0.888 8 C 0.516 3.484 9 O -0.536 6.536 10 N -0.596 5.596 11 C 0.080 3.920 12 C 0.245 3.755 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.142 4.142 22 C 0.521 3.479 23 O -0.537 6.537 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.108 0.892 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 5.003 7.990 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.007 4.007 6 C -0.146 4.146 7 H 0.130 0.870 8 C 0.301 3.699 9 O -0.414 6.414 10 N -0.327 5.327 11 C -0.064 4.064 12 C 0.126 3.874 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.183 4.183 22 C 0.309 3.691 23 O -0.415 6.415 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.905 4.440 8.055 17.514 hybrid contribution 0.470 0.593 -0.964 1.225 sum -14.434 5.033 7.091 16.851 Atomic orbital electron populations 1.21687 0.95060 1.02024 1.01839 1.21931 0.96161 0.97190 1.02967 1.21432 0.77876 0.97152 1.03026 1.48371 1.06227 1.73141 1.07522 1.22029 0.88112 1.04066 0.86488 1.22302 0.94902 1.02287 0.95063 0.87050 1.19751 0.83353 0.83337 0.83486 1.90682 1.81529 1.35576 1.33592 1.48116 1.06297 1.40698 1.37621 1.21740 1.01774 0.91961 0.90942 1.19331 0.84347 0.93074 0.90679 1.21417 1.20987 1.07212 1.07125 0.92409 1.24940 0.95993 0.95056 0.98099 1.69928 1.26104 1.19484 1.37759 0.86489 0.78602 0.79682 0.82601 1.20628 1.21065 1.19878 1.22394 0.94910 1.05454 0.95514 1.20851 0.89136 0.74835 0.84302 1.90704 1.78700 1.50926 1.21131 0.92407 0.92585 0.92556 0.91398 0.91563 0.90118 0.90299 0.88819 0.89946 0.93403 0.90590 0.92352 0.94838 0.93725 0.92649 0.87332 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.14 -1.41 6.26 -26.73 -0.17 -1.57 16 3 C 0.13 1.28 5.93 -4.04 -0.02 1.25 16 4 N -0.62 -7.57 2.93 -172.41 -0.51 -8.07 16 5 C 0.12 1.45 6.70 -3.12 -0.02 1.43 16 6 C -0.12 -1.64 2.55 -90.01 -0.23 -1.87 16 7 H 0.11 1.26 7.25 -51.93 -0.38 0.88 16 8 C 0.52 9.73 6.97 -10.98 -0.08 9.65 16 9 O -0.54 -12.41 15.08 5.56 0.08 -12.32 16 10 N -0.60 -11.74 2.86 -182.96 -0.52 -12.26 16 11 C 0.08 1.15 9.20 59.85 0.55 1.70 16 12 C 0.24 6.14 5.16 -5.20 -0.03 6.11 16 13 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.14 -1.76 5.49 -26.62 -0.15 -1.91 16 22 C 0.52 7.30 8.02 -10.86 -0.09 7.22 16 23 O -0.54 -9.16 17.59 5.55 0.10 -9.07 16 24 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.35 6.96 -51.93 -0.36 0.99 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.06 0.67 6.12 -51.93 -0.32 0.35 16 36 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.11 1.13 7.57 -51.93 -0.39 0.74 16 40 H 0.11 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -33.39 332.19 -6.83 -40.22 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.42 Total: -2.54 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.28 Total: 8.03 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.29 Total: -45.64 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.18 Total: -21.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.39 -6.83 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.775 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds