Wall clock time and date at job start Mon Mar 30 2020 01:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 N 1.46506 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34669 * 89.99982 * 4 3 2 6 6 C 1.54480 * 105.54782 * 162.91674 * 5 4 3 7 7 H 1.09000 * 110.97126 * 267.34164 * 6 5 4 8 8 C 1.50706 * 110.97017 * 143.57833 * 6 5 4 9 9 O 1.21277 * 119.99637 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00137 * 180.02562 * 8 6 5 11 11 C 1.46502 * 119.99670 * 359.97438 * 10 8 6 12 12 C 1.46494 * 120.00044 * 180.02562 * 10 8 6 13 13 C 1.50699 * 109.47042 * 89.99625 * 12 10 8 14 14 H 1.08005 * 120.00132 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99740 * 180.02562 * 13 12 10 16 16 N 1.31508 * 120.00173 * 359.97438 * 15 13 12 17 17 Si 1.86811 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47085 * 89.99514 * 17 15 13 19 19 H 1.48499 * 109.46878 * 210.00111 * 17 15 13 20 20 H 1.48501 * 109.46795 * 329.99788 * 17 15 13 21 21 C 1.54861 * 101.66110 * 25.43666 * 6 5 4 22 22 C 1.34415 * 124.35027 * 269.97473 * 4 3 2 23 23 O 1.21288 * 124.94382 * 0.45207 * 22 4 3 24 24 H 1.09007 * 109.47456 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47685 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47339 * 60.00322 * 1 2 3 27 27 H 1.08993 * 109.47257 * 239.99516 * 2 1 3 28 28 H 1.09006 * 109.46814 * 120.00228 * 2 1 3 29 29 H 1.09003 * 109.46934 * 59.99812 * 3 2 1 30 30 H 1.08995 * 109.47116 * 299.99554 * 3 2 1 31 31 H 1.09002 * 110.24740 * 281.96247 * 5 4 3 32 32 H 1.09002 * 110.24616 * 43.87772 * 5 4 3 33 33 H 1.09000 * 109.46790 * 90.00535 * 11 10 8 34 34 H 1.09005 * 109.47091 * 210.00056 * 11 10 8 35 35 H 1.09004 * 109.47303 * 330.00350 * 11 10 8 36 36 H 1.08993 * 109.47219 * 209.99668 * 12 10 8 37 37 H 1.08998 * 109.46934 * 330.00026 * 12 10 8 38 38 H 0.97008 * 120.00085 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.46775 * 216.51886 * 21 6 5 40 40 H 1.08993 * 110.60550 * 93.93039 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3335 1.4422 -1.2107 6 6 5.7415 1.8795 -0.7495 7 1 5.8663 2.9580 -0.8461 8 6 6.8121 1.1442 -1.5139 9 8 6.5035 0.3339 -2.3619 10 7 8.1123 1.3870 -1.2553 11 6 8.4849 2.3663 -0.2313 12 6 9.1529 0.6727 -1.9988 13 6 9.5132 1.4547 -3.2356 14 1 9.0169 2.3905 -3.4465 15 6 10.4764 0.9754 -4.0980 16 7 11.0810 -0.1638 -3.8410 17 14 10.9235 1.9452 -5.6308 18 1 12.0278 2.8868 -5.3162 19 1 11.3594 1.0098 -6.6986 20 1 9.7384 2.7097 -6.0960 21 6 5.7295 1.4534 0.7394 22 6 4.2630 1.4431 1.1107 23 8 3.8337 1.4359 2.2450 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.3715 0.4417 -1.6416 32 1 3.9381 2.1510 -1.9384 33 1 8.5746 1.8668 0.7334 34 1 9.4394 2.8220 -0.4946 35 1 7.7179 3.1385 -0.1708 36 1 10.0361 0.5599 -1.3702 37 1 8.7833 -0.3117 -2.2862 38 1 11.7589 -0.5007 -4.4475 39 1 6.2718 2.1775 1.3474 40 1 6.1598 0.4591 0.8573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411181336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:47 Heat of formation + Delta-G solvation = -98.039180 kcal Electronic energy + Delta-G solvation = -20827.276699 eV Core-core repulsion = 17640.895810 eV Total energy + Delta-G solvation = -3186.380888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89389 -40.24834 -37.51672 -36.59740 -35.79401 -34.67256 -32.52472 -29.80961 -28.74680 -27.45918 -27.14079 -25.34775 -23.26991 -22.70319 -20.54558 -19.91029 -18.73098 -18.31202 -17.80911 -17.14272 -16.90582 -16.37053 -16.13869 -15.78067 -15.55397 -14.79430 -14.75381 -14.58983 -14.35012 -13.93325 -13.77663 -13.69024 -13.43168 -13.07001 -13.02940 -12.81508 -12.74517 -12.51025 -12.47500 -12.35009 -12.20236 -12.15020 -11.68552 -11.66610 -11.08233 -10.62082 -10.56064 -9.76658 -9.41219 -8.20399 -6.35095 1.39499 1.42040 1.45700 1.52125 1.74162 1.92806 2.30750 2.45331 3.09662 3.18855 3.36791 3.73105 3.85174 3.99287 4.03079 4.13110 4.32868 4.48187 4.49119 4.54079 4.61064 4.64629 4.75199 4.78241 4.86503 4.94294 5.02571 5.06756 5.14036 5.16160 5.25963 5.31866 5.54970 5.57696 5.84318 6.01762 6.07610 6.70808 6.78758 7.05914 7.29196 7.45277 8.86615 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.004058 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.793648 B = 6897.459144 C = 7366.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.613 5.613 5 C 0.119 3.881 6 C -0.107 4.107 7 H 0.147 0.853 8 C 0.510 3.490 9 O -0.589 6.589 10 N -0.603 5.603 11 C 0.073 3.927 12 C 0.258 3.742 13 C -0.542 4.542 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.135 4.135 22 C 0.517 3.483 23 O -0.571 6.571 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.024 0.976 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 7.451 7.946 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.345 5.345 5 C -0.004 4.004 6 C -0.128 4.128 7 H 0.164 0.836 8 C 0.298 3.702 9 O -0.470 6.470 10 N -0.334 5.334 11 C -0.069 4.069 12 C 0.137 3.863 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.176 4.176 22 C 0.306 3.694 23 O -0.451 6.451 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.042 0.958 37 H 0.017 0.983 38 H 0.075 0.925 39 H 0.155 0.845 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.881 6.922 8.033 19.097 hybrid contribution 0.743 -0.229 -0.924 1.208 sum -15.139 6.694 7.109 18.015 Atomic orbital electron populations 1.21658 0.93197 1.02519 1.02753 1.21889 0.97787 0.96840 1.01476 1.21657 0.76578 0.97415 1.04284 1.48464 1.07131 1.72015 1.06892 1.21988 0.88006 1.03546 0.86876 1.22204 0.92891 1.03177 0.94556 0.83550 1.20645 0.83855 0.82717 0.83018 1.90658 1.82365 1.37867 1.36103 1.48102 1.05761 1.41305 1.38185 1.22057 1.02708 0.91901 0.90237 1.18776 0.85216 0.91573 0.90747 1.21729 1.20938 1.07284 1.08076 0.92427 1.25863 0.95957 0.96025 1.01395 1.70053 1.26741 1.21087 1.39077 0.85415 0.78650 0.78335 0.78408 1.19021 1.20950 1.19436 1.22398 0.94288 1.05831 0.95036 1.21054 0.89836 0.74403 0.84099 1.90691 1.79302 1.52737 1.22415 0.92191 0.92184 0.91085 0.92028 0.93902 0.90244 0.87565 0.91157 0.87351 0.90976 0.91453 0.88398 0.95845 0.98261 0.92477 0.84475 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.14 -2.65 6.26 30.59 0.19 -2.46 16 3 C 0.12 2.21 5.93 86.38 0.51 2.72 16 4 N -0.61 -13.83 2.93 -817.98 -2.40 -16.23 16 5 C 0.12 2.74 6.70 86.83 0.58 3.33 16 6 C -0.11 -2.57 2.55 -10.40 -0.03 -2.60 16 7 H 0.15 2.59 7.25 -2.39 -0.02 2.57 16 8 C 0.51 18.98 6.97 87.66 0.61 19.59 16 9 O -0.59 -28.01 15.08 -3.02 -0.05 -28.05 16 10 N -0.60 -23.48 2.86 -851.14 -2.43 -25.91 16 11 C 0.07 1.92 9.20 127.77 1.18 3.10 16 12 C 0.26 13.36 5.16 85.63 0.44 13.81 16 13 C -0.54 -30.07 9.39 25.60 0.24 -29.83 16 14 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.01 0.36 5.46 84.66 0.46 0.83 16 16 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 17 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C -0.14 -3.03 5.49 30.67 0.17 -2.86 16 22 C 0.52 13.64 8.02 87.90 0.71 14.35 16 23 O -0.57 -18.89 17.59 -3.06 -0.05 -18.95 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.08 1.51 7.93 -2.39 -0.02 1.49 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 2.02 6.96 -2.39 -0.02 2.00 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 34 H 0.07 1.91 8.07 -2.38 -0.02 1.89 16 35 H 0.10 1.80 6.12 -2.39 -0.01 1.79 16 36 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 37 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 38 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.14 2.30 7.57 -2.39 -0.02 2.28 16 40 H 0.10 2.47 7.90 -2.39 -0.02 2.45 16 Total: -1.00 -75.45 332.19 4.17 -71.28 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.01 Total: 8.48 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.78 Total: 18.71 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -4.54 Total: -97.16 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.10 Total: -47.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.45 4.17 -71.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.764 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds