Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.46763 * 124.34806 * 90.00467 * 4 3 2 6 6 C 1.54482 * 105.47085 * 197.01692 * 5 4 3 7 7 H 1.08995 * 110.97376 * 92.70400 * 6 5 4 8 8 C 1.50704 * 110.96630 * 216.46207 * 6 5 4 9 9 O 1.21284 * 119.99625 * 359.97438 * 8 6 5 10 10 N 1.34767 * 119.99997 * 179.97438 * 8 6 5 11 11 C 1.46508 * 120.00042 * 180.02562 * 10 8 6 12 12 H 1.08996 * 109.46519 * 324.99649 * 11 10 8 13 13 C 1.52996 * 109.47108 * 84.99914 * 11 10 8 14 14 C 1.50695 * 109.46971 * 205.00063 * 11 10 8 15 15 H 1.08001 * 120.00445 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00059 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99836 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00272 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46824 * 60.00295 * 18 16 14 20 20 H 1.48500 * 109.46934 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 300.00152 * 18 16 14 22 22 C 1.54627 * 101.76258 * 334.57759 * 6 5 4 23 23 C 1.34415 * 124.35240 * 269.70019 * 4 3 2 24 24 O 1.21288 * 124.94000 * 359.57121 * 23 4 3 25 25 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 26 26 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 28 28 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 29 29 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 30 30 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 31 31 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 32 32 H 1.08999 * 110.24140 * 316.01119 * 5 4 3 33 33 H 1.08993 * 110.25038 * 77.92305 * 5 4 3 34 34 H 0.96996 * 120.00230 * 359.97438 * 10 8 6 35 35 H 1.09003 * 109.46975 * 299.99767 * 13 11 10 36 36 H 1.08995 * 109.47085 * 59.99914 * 13 11 10 37 37 H 1.09005 * 109.46929 * 180.02562 * 13 11 10 38 38 H 0.96998 * 119.99838 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47953 * 143.47864 * 22 6 5 40 40 H 1.08998 * 110.48875 * 265.99028 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7413 1.0066 -0.7471 7 1 5.8672 -0.0718 -0.8430 8 6 6.8123 1.7425 -1.5104 9 8 6.5042 2.5520 -2.3594 10 7 8.1123 1.5009 -1.2497 11 6 9.1534 2.2167 -1.9914 12 1 8.8219 2.3798 -3.0168 13 6 9.4211 3.5657 -1.3211 14 6 10.4189 1.3985 -1.9967 15 1 10.4453 0.4413 -1.4973 16 6 11.5432 1.8719 -2.6392 17 7 11.5113 3.0378 -3.2471 18 14 13.1122 0.8580 -2.6453 19 1 12.8525 -0.4518 -3.2950 20 1 14.1674 1.5836 -3.3972 21 1 13.5639 0.6367 -1.2481 22 6 5.7295 1.4324 0.7393 23 6 4.2631 1.4484 1.1106 24 8 3.8337 1.4619 2.2449 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9392 0.7320 -1.9374 33 1 4.3701 2.4422 -1.6430 34 1 8.3586 0.8538 -0.5705 35 1 8.5057 4.1575 -1.3173 36 1 9.7525 3.4025 -0.2957 37 1 10.1954 4.0985 -1.8732 38 1 12.3022 3.3707 -3.6994 39 1 6.2721 0.7088 1.3477 40 1 6.1612 2.4266 0.8548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411747439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = -87.534114 kcal Electronic energy + Delta-G solvation = -20609.361719 eV Core-core repulsion = 17423.436365 eV Total energy + Delta-G solvation = -3185.925355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71174 -38.77893 -36.41379 -35.07342 -34.67014 -32.52730 -31.53676 -28.94630 -27.64731 -26.40824 -25.30052 -23.34143 -21.97181 -20.83961 -19.42873 -19.42238 -17.54346 -16.98558 -16.31457 -15.69438 -15.40616 -15.01263 -14.77595 -14.41639 -14.21614 -13.77710 -13.75610 -13.22789 -12.96969 -12.76254 -12.45191 -12.33883 -12.09314 -11.69760 -11.60548 -11.51752 -11.28161 -11.11284 -10.98998 -10.95145 -10.77811 -10.38244 -10.27765 -9.91709 -9.16131 -9.10492 -8.76524 -8.59707 -8.01743 -6.16721 -4.26515 2.53776 2.87547 3.18168 3.23112 3.28670 3.29544 3.85896 4.27847 4.33183 4.45861 4.72363 4.73796 4.91721 4.97046 5.02474 5.15912 5.20645 5.38068 5.42959 5.47662 5.52452 5.63405 5.74550 5.76326 5.85062 5.94914 6.00064 6.45311 6.76821 6.90178 7.02228 7.08797 7.36159 7.48174 7.63588 7.85002 8.09613 8.11321 8.55883 8.70718 8.99729 9.41098 10.89168 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.003564 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.790513 B = 7855.365240 C = 7918.858915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.112 0.888 8 C 0.513 3.487 9 O -0.550 6.550 10 N -0.703 5.703 11 C 0.264 3.736 12 H 0.050 0.950 13 C -0.148 4.148 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.144 4.144 23 C 0.521 3.479 24 O -0.537 6.537 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.390 0.610 35 H 0.014 0.986 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.265 0.735 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -5.492 5.069 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.130 0.870 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.350 5.350 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.184 4.184 23 C 0.309 3.691 24 O -0.414 6.414 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.223 0.777 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.889 -4.749 4.920 17.298 hybrid contribution 1.081 -0.889 0.205 1.415 sum -14.808 -5.638 5.125 16.654 Atomic orbital electron populations 1.21690 0.95036 1.01990 1.01976 1.21917 0.96203 0.97183 1.02717 1.21433 0.77935 0.97046 1.03231 1.48359 1.06198 1.73271 1.07501 1.22010 0.88053 1.03977 0.86573 1.22282 0.94966 1.02326 0.95152 0.87014 1.19873 0.83913 0.83082 0.83541 1.90671 1.82183 1.35887 1.34197 1.46520 1.05527 1.42804 1.40108 1.18774 0.84026 0.89108 0.91804 0.93260 1.22087 1.00038 0.98970 0.99550 1.21172 0.95648 1.04713 1.35935 0.92066 1.24887 0.98898 0.95088 0.94780 1.69888 1.29865 1.18134 1.34165 0.86500 0.82262 0.80058 0.78232 1.20155 1.21121 1.20131 1.22318 0.94991 1.05622 0.95468 1.20845 0.89121 0.74811 0.84311 1.90707 1.78686 1.50831 1.21151 0.92515 0.92429 0.92506 0.91620 0.91578 0.90060 0.90225 0.90029 0.88785 0.77725 0.96648 0.95373 0.89094 0.92459 0.87244 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.13 1.23 5.94 -4.04 -0.02 1.21 16 4 N -0.62 -7.41 2.93 -172.41 -0.51 -7.91 16 5 C 0.12 1.39 6.71 -3.12 -0.02 1.37 16 6 C -0.13 -1.58 3.55 -90.14 -0.32 -1.90 16 7 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.51 9.09 7.02 -10.99 -0.08 9.01 16 9 O -0.55 -11.91 15.17 5.55 0.08 -11.82 16 10 N -0.70 -13.42 5.07 -54.93 -0.28 -13.70 16 11 C 0.26 6.41 2.56 -69.08 -0.18 6.24 16 12 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 13 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 14 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.33 11.32 55.43 0.63 -23.71 16 18 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 C -0.14 -1.77 6.41 -26.74 -0.17 -1.94 16 23 C 0.52 7.29 8.02 -10.86 -0.09 7.21 16 24 O -0.54 -9.22 17.59 5.55 0.10 -9.12 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.29 6.96 -51.93 -0.36 0.92 16 34 H 0.39 6.37 8.54 -40.82 -0.35 6.02 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.11 1.44 7.89 -51.93 -0.41 1.03 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -31.12 333.17 -7.13 -38.25 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.43 Total: 4.27 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.73 Total: 3.58 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.16 Total: -45.32 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.18 Total: -20.95 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.12 -7.13 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411747439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.284 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds