Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.46763 * 124.34806 * 90.00467 * 4 3 2 6 6 C 1.54482 * 105.47085 * 197.01692 * 5 4 3 7 7 H 1.08995 * 110.97376 * 92.70400 * 6 5 4 8 8 C 1.50704 * 110.96630 * 216.46207 * 6 5 4 9 9 O 1.21284 * 119.99625 * 359.97438 * 8 6 5 10 10 N 1.34767 * 119.99997 * 179.97438 * 8 6 5 11 11 C 1.46508 * 120.00042 * 180.02562 * 10 8 6 12 12 H 1.08996 * 109.46519 * 324.99649 * 11 10 8 13 13 C 1.52996 * 109.47108 * 84.99914 * 11 10 8 14 14 C 1.50695 * 109.46971 * 205.00063 * 11 10 8 15 15 H 1.08001 * 120.00445 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00059 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99836 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00272 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46824 * 60.00295 * 18 16 14 20 20 H 1.48500 * 109.46934 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 300.00152 * 18 16 14 22 22 C 1.54627 * 101.76258 * 334.57759 * 6 5 4 23 23 C 1.34415 * 124.35240 * 269.70019 * 4 3 2 24 24 O 1.21288 * 124.94000 * 359.57121 * 23 4 3 25 25 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 26 26 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 28 28 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 29 29 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 30 30 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 31 31 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 32 32 H 1.08999 * 110.24140 * 316.01119 * 5 4 3 33 33 H 1.08993 * 110.25038 * 77.92305 * 5 4 3 34 34 H 0.96996 * 120.00230 * 359.97438 * 10 8 6 35 35 H 1.09003 * 109.46975 * 299.99767 * 13 11 10 36 36 H 1.08995 * 109.47085 * 59.99914 * 13 11 10 37 37 H 1.09005 * 109.46929 * 180.02562 * 13 11 10 38 38 H 0.96998 * 119.99838 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47953 * 143.47864 * 22 6 5 40 40 H 1.08998 * 110.48875 * 265.99028 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7413 1.0066 -0.7471 7 1 5.8672 -0.0718 -0.8430 8 6 6.8123 1.7425 -1.5104 9 8 6.5042 2.5520 -2.3594 10 7 8.1123 1.5009 -1.2497 11 6 9.1534 2.2167 -1.9914 12 1 8.8219 2.3798 -3.0168 13 6 9.4211 3.5657 -1.3211 14 6 10.4189 1.3985 -1.9967 15 1 10.4453 0.4413 -1.4973 16 6 11.5432 1.8719 -2.6392 17 7 11.5113 3.0378 -3.2471 18 14 13.1122 0.8580 -2.6453 19 1 12.8525 -0.4518 -3.2950 20 1 14.1674 1.5836 -3.3972 21 1 13.5639 0.6367 -1.2481 22 6 5.7295 1.4324 0.7393 23 6 4.2631 1.4484 1.1106 24 8 3.8337 1.4619 2.2449 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9392 0.7320 -1.9374 33 1 4.3701 2.4422 -1.6430 34 1 8.3586 0.8538 -0.5705 35 1 8.5057 4.1575 -1.3173 36 1 9.7525 3.4025 -0.2957 37 1 10.1954 4.0985 -1.8732 38 1 12.3022 3.3707 -3.6994 39 1 6.2721 0.7088 1.3477 40 1 6.1612 2.4266 0.8548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411747439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = -108.192469 kcal Electronic energy + Delta-G solvation = -20610.257533 eV Core-core repulsion = 17423.436365 eV Total energy + Delta-G solvation = -3186.821168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83762 -40.22265 -37.55755 -36.67950 -35.70814 -34.30955 -32.58741 -30.67637 -28.71112 -27.36113 -27.19896 -24.60662 -22.70687 -22.48762 -20.98653 -20.44373 -19.01758 -18.07986 -17.77430 -17.10714 -16.84022 -16.40053 -15.89784 -15.71815 -15.50414 -14.79394 -14.69924 -14.62556 -14.38561 -14.24225 -13.72999 -13.53630 -13.08212 -13.01422 -12.83949 -12.80567 -12.71135 -12.44705 -12.37702 -12.23965 -12.17591 -12.12338 -11.64712 -11.09749 -11.08482 -10.66531 -10.53079 -9.77244 -9.72157 -8.15393 -6.32452 1.45494 1.47674 1.48871 1.56570 1.74832 1.92444 2.36170 2.58522 3.15426 3.24252 3.40452 3.86747 3.87663 4.01698 4.05024 4.27004 4.34893 4.49979 4.55932 4.62255 4.68345 4.78384 4.81357 4.89165 4.94852 4.97962 5.12920 5.15791 5.19580 5.33844 5.46497 5.55951 5.63272 5.71936 5.92496 6.01880 6.12865 6.75756 6.96107 7.05877 7.34848 7.55396 8.90492 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.003564 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.790513 B = 7855.365240 C = 7918.858915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.613 5.613 5 C 0.119 3.881 6 C -0.108 4.108 7 H 0.147 0.853 8 C 0.513 3.487 9 O -0.592 6.592 10 N -0.699 5.699 11 C 0.271 3.729 12 H 0.002 0.998 13 C -0.136 4.136 14 C -0.547 4.547 15 H 0.075 0.925 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.970 3.030 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.138 4.138 23 C 0.516 3.484 24 O -0.574 6.574 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.013 0.987 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.265 0.735 39 H 0.133 0.867 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.943 -7.475 5.572 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.345 5.345 5 C -0.003 4.003 6 C -0.130 4.130 7 H 0.165 0.835 8 C 0.299 3.701 9 O -0.473 6.473 10 N -0.348 5.348 11 C 0.168 3.832 12 H 0.020 0.980 13 C -0.194 4.194 14 C -0.585 4.585 15 H 0.093 0.907 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.794 3.206 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.178 4.178 23 C 0.305 3.695 24 O -0.454 6.454 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.151 0.849 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.334 -6.762 5.432 18.494 hybrid contribution 1.137 -0.222 0.011 1.159 sum -15.197 -6.984 5.442 17.588 Atomic orbital electron populations 1.21676 0.93676 1.02621 1.02442 1.21846 0.97332 0.95947 1.02193 1.21651 0.76694 0.98174 1.03717 1.48457 1.07081 1.72044 1.06938 1.22002 0.87811 1.03725 0.86805 1.22183 0.93116 1.03357 0.94306 0.83530 1.20637 0.84136 0.82381 0.82942 1.90661 1.82775 1.37736 1.36167 1.46237 1.05329 1.42987 1.40209 1.18330 0.85048 0.89739 0.90117 0.97981 1.21915 0.99068 0.98763 0.99703 1.21545 0.96000 1.05262 1.35669 0.90650 1.25772 1.02266 0.96057 0.94440 1.70043 1.30643 1.19837 1.35099 0.85435 0.78110 0.78447 0.78569 1.19460 1.21480 1.19008 1.22317 0.94262 1.05882 0.95356 1.21073 0.89876 0.74415 0.84134 1.90690 1.79337 1.52797 1.22570 0.91370 0.91731 0.92757 0.90781 0.93364 0.91119 0.88222 0.87389 0.90661 0.75751 0.96785 0.94096 0.91677 0.92622 0.84863 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.13 -2.08 6.26 30.59 0.19 -1.89 16 3 C 0.12 2.14 5.94 86.38 0.51 2.65 16 4 N -0.61 -13.57 2.93 -817.98 -2.40 -15.97 16 5 C 0.12 2.58 6.71 86.83 0.58 3.16 16 6 C -0.11 -2.45 3.55 -10.48 -0.04 -2.49 16 7 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 8 C 0.51 17.67 7.02 87.66 0.62 18.29 16 9 O -0.59 -25.81 15.17 -3.04 -0.05 -25.86 16 10 N -0.70 -25.97 5.07 -446.10 -2.26 -28.23 16 11 C 0.27 13.28 2.56 44.24 0.11 13.39 16 12 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 13 C -0.14 -6.60 9.26 71.98 0.67 -5.94 16 14 C -0.55 -27.63 8.73 25.60 0.22 -27.40 16 15 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.01 0.77 5.30 84.65 0.45 1.22 16 17 N -0.92 -51.46 11.32 21.45 0.24 -51.22 16 18 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.14 -3.10 6.41 30.59 0.20 -2.91 16 23 C 0.52 13.74 8.02 87.90 0.71 14.45 16 24 O -0.57 -19.38 17.59 -3.05 -0.05 -19.44 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.98 6.96 -2.39 -0.02 1.96 16 34 H 0.41 12.36 8.54 -92.71 -0.79 11.57 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.06 3.52 6.07 -2.38 -0.01 3.50 16 38 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.10 2.51 7.89 -2.39 -0.02 2.49 16 Total: -1.00 -68.63 333.17 2.68 -65.96 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.24 Total: 20.43 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.93 Total: 11.51 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -4.42 Total: -95.42 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.10 Total: -45.29 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -68.63 2.68 -65.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411747439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.236 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds