Wall clock time and date at job start Mon Mar 30 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 N 1.46500 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46761 * 124.34871 * 269.95578 * 4 3 2 6 6 C 1.54487 * 105.47096 * 197.03821 * 5 4 3 7 7 H 1.08996 * 111.00135 * 92.71655 * 6 5 4 8 8 C 1.50694 * 110.96856 * 216.46478 * 6 5 4 9 9 O 1.21283 * 120.00363 * 353.83107 * 8 6 5 10 10 N 1.34784 * 119.99988 * 173.83225 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 6 12 12 H 1.08999 * 109.47597 * 34.99540 * 11 10 8 13 13 C 1.53000 * 109.47099 * 274.99655 * 11 10 8 14 14 C 1.50703 * 109.47052 * 154.99907 * 11 10 8 15 15 H 1.07995 * 120.00009 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99689 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00541 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99577 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47145 * 59.99911 * 18 16 14 20 20 H 1.48499 * 109.46916 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47228 * 300.00064 * 18 16 14 22 22 C 1.54627 * 101.76330 * 334.58509 * 6 5 4 23 23 C 1.34416 * 124.34517 * 89.97758 * 4 3 2 24 24 O 1.21280 * 124.94668 * 359.60771 * 23 4 3 25 25 H 1.09005 * 109.47609 * 299.99926 * 1 2 3 26 26 H 1.08999 * 109.47229 * 59.99906 * 1 2 3 27 27 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00445 * 2 1 3 29 29 H 1.08999 * 109.47229 * 120.00094 * 2 1 3 30 30 H 1.09007 * 109.46475 * 60.00003 * 3 2 1 31 31 H 1.08999 * 109.47115 * 300.00164 * 3 2 1 32 32 H 1.08995 * 110.24747 * 78.04207 * 5 4 3 33 33 H 1.09000 * 110.24895 * 316.03442 * 5 4 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 10 8 6 35 35 H 1.09003 * 109.47308 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.47224 * 300.00512 * 13 11 10 37 37 H 1.09008 * 109.47230 * 60.00254 * 13 11 10 38 38 H 0.96996 * 120.00555 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.49059 * 143.48003 * 22 6 5 40 40 H 1.09001 * 110.48461 * 265.98895 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3325 1.4436 1.2127 6 6 5.7406 1.8794 0.7499 7 1 5.8667 2.9579 0.8452 8 6 6.8111 1.1444 1.5144 9 8 6.5073 0.4195 2.4381 10 7 8.1062 1.2925 1.1718 11 6 9.1473 0.5826 1.9189 12 1 8.7712 -0.3923 2.2291 13 6 9.5333 1.3972 3.1551 14 6 10.3581 0.3978 1.0409 15 1 10.3525 0.7714 0.0276 16 6 11.4731 -0.2483 1.5313 17 7 11.4798 -0.7037 2.7650 18 14 12.9742 -0.4767 0.4432 19 1 13.4861 0.8517 0.0207 20 1 14.0295 -1.1965 1.2005 21 1 12.6001 -1.2675 -0.7568 22 6 5.7300 1.4528 -0.7363 23 6 4.2638 1.4419 -1.1089 24 8 3.8354 1.4345 -2.2435 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 4.3702 0.4436 1.6446 33 1 3.9374 2.1542 1.9386 34 1 8.3491 1.8726 0.4333 35 1 10.3083 0.8692 3.7108 36 1 9.9094 2.3722 2.8449 37 1 8.6575 1.5309 3.7902 38 1 12.2643 -1.1579 3.1101 39 1 6.2729 2.1761 -1.3448 40 1 6.1621 0.4587 -0.8509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411747441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:13 Heat of formation + Delta-G solvation = -87.544182 kcal Electronic energy + Delta-G solvation = -20637.403841 eV Core-core repulsion = 17451.478049 eV Total energy + Delta-G solvation = -3185.925791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70254 -38.77527 -36.39799 -35.05548 -34.68158 -32.52760 -31.51118 -28.91693 -27.64644 -26.37760 -25.30243 -23.35531 -21.93332 -20.82988 -19.46962 -19.37589 -17.62467 -16.81271 -16.31820 -15.69832 -15.39881 -15.01730 -14.81651 -14.41467 -14.14928 -13.87119 -13.58757 -13.33596 -12.95295 -12.65859 -12.45010 -12.34440 -11.97121 -11.82284 -11.57388 -11.45425 -11.28591 -11.11120 -10.98137 -10.90548 -10.78217 -10.37580 -10.27431 -9.90637 -9.15478 -9.10483 -8.76299 -8.59682 -8.01261 -6.16377 -4.26123 2.55468 2.88190 3.18621 3.23826 3.29282 3.30490 3.86538 4.28563 4.33466 4.45124 4.76313 4.77129 4.91982 4.99213 5.06373 5.16183 5.22577 5.40059 5.42353 5.48323 5.55329 5.64053 5.77903 5.79813 5.89768 5.96653 6.04979 6.46698 6.76344 6.89646 7.02871 7.08615 7.36160 7.48177 7.63854 7.85058 8.09673 8.12463 8.55977 8.71125 8.99878 9.41553 10.89511 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.003828 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.696569 B = 7313.037732 C = 7680.051208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.113 0.887 8 C 0.512 3.488 9 O -0.550 6.550 10 N -0.703 5.703 11 C 0.264 3.736 12 H 0.050 0.950 13 C -0.148 4.148 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.146 4.146 23 C 0.521 3.479 24 O -0.536 6.536 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.390 0.610 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.109 0.891 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 5.851 -3.458 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.147 4.147 7 H 0.131 0.869 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.350 5.350 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.186 4.186 23 C 0.309 3.691 24 O -0.413 6.413 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.223 0.777 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.774 5.213 -3.235 16.926 hybrid contribution 1.048 0.175 -0.773 1.314 sum -14.727 5.388 -4.008 16.186 Atomic orbital electron populations 1.21686 0.95060 1.02032 1.01830 1.21934 0.96162 0.97196 1.02976 1.21429 0.77891 0.97143 1.03007 1.48370 1.06211 1.73319 1.07508 1.21992 0.88114 1.03874 0.86484 1.22294 0.94968 1.02302 0.95159 0.86931 1.19887 0.83868 0.82328 0.84335 1.90673 1.82169 1.39612 1.30483 1.46523 1.05946 1.47502 1.35020 1.18773 0.84063 0.91639 0.89261 0.93262 1.22090 1.00218 0.99247 0.99079 1.21177 0.98666 1.38776 0.98848 0.92038 1.24881 0.98637 0.94939 0.95171 1.69880 1.30020 1.37508 1.14670 0.86505 0.81878 0.78384 0.80327 1.20128 1.21128 1.20124 1.22355 0.94965 1.05788 0.95481 1.20852 0.89130 0.74799 0.84306 1.90706 1.78729 1.50764 1.21111 0.92568 0.92581 0.92401 0.91532 0.91428 0.90332 0.90114 0.89004 0.89968 0.77727 0.89090 0.95413 0.96623 0.92462 0.87257 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.14 -1.39 6.26 -26.73 -0.17 -1.56 16 3 C 0.13 1.26 5.93 -4.04 -0.02 1.23 16 4 N -0.62 -7.45 2.93 -172.41 -0.51 -7.96 16 5 C 0.12 1.41 6.66 -3.12 -0.02 1.39 16 6 C -0.13 -1.57 3.54 -90.14 -0.32 -1.89 16 7 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.51 9.09 7.04 -10.98 -0.08 9.01 16 9 O -0.55 -11.91 15.23 5.56 0.08 -11.83 16 10 N -0.70 -13.42 5.02 -54.93 -0.28 -13.70 16 11 C 0.26 6.41 2.56 -69.08 -0.18 6.23 16 12 H 0.05 1.39 7.57 -51.93 -0.39 1.00 16 13 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 14 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 18 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.15 -1.81 6.37 -26.74 -0.17 -1.98 16 23 C 0.52 7.36 8.02 -10.86 -0.09 7.27 16 24 O -0.54 -9.30 17.60 5.56 0.10 -9.20 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.84 7.93 -51.93 -0.41 0.42 16 32 H 0.09 1.26 7.06 -51.93 -0.37 0.90 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.39 6.38 8.54 -40.82 -0.35 6.03 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -31.19 333.22 -7.13 -38.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.44 Total: 4.44 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.73 Total: 3.39 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.15 Total: -45.39 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.19 -7.13 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411747441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.219 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds